Wall clock time and date at job start Tue Mar 31 2020 21:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47357 * 2 1 4 4 C 1.52999 * 109.46816 * 119.99739 * 2 1 3 5 5 H 1.08999 * 109.47354 * 181.02805 * 4 2 1 6 6 C 1.53001 * 109.47351 * 301.03067 * 4 2 1 7 7 N 1.46505 * 109.47294 * 174.99978 * 6 4 2 8 8 C 1.34775 * 119.99950 * 179.97438 * 7 6 4 9 9 O 1.21280 * 119.99714 * 0.02562 * 8 7 6 10 10 C 1.50694 * 120.00004 * 179.97438 * 8 7 6 11 11 C 1.50695 * 109.47438 * 180.02562 * 10 8 7 12 12 C 1.41376 * 128.00823 * 89.99573 * 11 10 8 13 13 N 1.30176 * 106.39624 * 179.97438 * 12 11 10 14 14 O 1.20922 * 111.60434 * 0.02562 * 13 12 11 15 15 C 1.34035 * 111.56917 * 359.97438 * 14 13 12 16 16 N 1.46901 * 109.47222 * 61.03377 * 4 2 1 17 17 C 1.46892 * 111.00300 * 86.40965 * 16 4 2 18 18 C 1.50702 * 109.47583 * 185.24970 * 17 16 4 19 19 O 1.21296 * 119.99503 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00392 * 180.02562 * 18 17 16 21 21 C 1.37098 * 120.00121 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99766 * 359.97438 * 21 20 18 23 23 C 1.38944 * 120.00044 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00118 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99960 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.47180 * 89.99763 * 25 23 21 27 27 H 1.48505 * 109.47039 * 209.99552 * 25 23 21 28 28 H 1.48497 * 109.47441 * 329.99611 * 25 23 21 29 29 H 1.08992 * 109.47555 * 299.99945 * 1 2 3 30 30 H 1.09005 * 109.46839 * 60.00369 * 1 2 3 31 31 H 1.08999 * 109.46968 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47269 * 239.99927 * 2 1 3 33 33 H 1.08993 * 109.47745 * 174.50741 * 3 2 1 34 34 H 1.08997 * 109.47292 * 294.51181 * 3 2 1 35 35 H 1.09008 * 109.47254 * 54.50456 * 3 2 1 36 36 H 1.08998 * 109.46943 * 54.99796 * 6 4 2 37 37 H 1.09000 * 109.47075 * 295.00247 * 6 4 2 38 38 H 0.96994 * 119.99758 * 0.02562 * 7 6 4 39 39 H 1.08998 * 109.47161 * 60.00159 * 10 8 7 40 40 H 1.09000 * 109.47340 * 300.00315 * 10 8 7 41 41 H 1.07997 * 126.80137 * 359.71270 * 12 11 10 42 42 H 1.07996 * 126.78385 * 180.02562 * 15 14 13 43 43 H 1.00901 * 110.99929 * 210.36348 * 16 4 2 44 44 H 1.09010 * 109.46966 * 305.24537 * 17 16 4 45 45 H 1.09002 * 109.47873 * 65.24533 * 17 16 4 46 46 H 0.97001 * 119.99617 * 359.97438 * 20 18 17 47 47 H 0.96999 * 120.00258 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1298 -0.7053 1.2586 6 6 1.5088 -0.0151 2.4984 7 7 1.8974 -0.7731 3.6903 8 6 1.5373 -0.3366 4.9136 9 8 0.8913 0.6835 5.0275 10 6 1.9365 -1.1166 6.1396 11 6 1.4135 -0.4211 7.3699 12 6 0.1683 -0.6083 8.0128 13 7 0.1545 0.2035 9.0303 14 8 1.1781 0.8429 9.1038 15 6 2.0277 0.5281 8.1160 16 7 1.5707 -2.1132 1.2369 17 6 2.4915 -2.9725 0.4809 18 6 1.9147 -4.3611 0.3803 19 8 0.8422 -4.6105 0.8890 20 7 2.5910 -5.3261 -0.2738 21 6 2.0664 -6.5895 -0.3648 22 1 1.1114 -6.8115 0.0882 23 6 2.7634 -7.5841 -1.0397 24 7 2.2608 -8.7952 -1.1264 25 14 4.4154 -7.2001 -1.8224 26 1 5.4996 -7.4530 -0.8396 27 1 4.6132 -8.0673 -3.0116 28 1 4.4468 -5.7750 -2.2384 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1255 1.4441 0.0984 34 1 1.7592 1.9271 -0.9350 35 1 1.5986 1.9840 0.8367 36 1 0.4219 0.0475 2.4459 37 1 1.9283 0.9895 2.5539 38 1 2.4143 -1.5887 3.5992 39 1 3.0233 -1.1800 6.1920 40 1 1.5162 -2.1208 6.0841 41 1 -0.6175 -1.2869 7.7158 42 1 3.0084 0.9481 7.9481 43 1 1.4416 -2.4596 2.1758 44 1 2.6308 -2.5636 -0.5200 45 1 3.4527 -3.0145 0.9931 46 1 3.4488 -5.1266 -0.6803 47 1 2.7475 -9.4897 -1.5973 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753839679.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:28 Heat of formation + Delta-G solvation = -7.015990 kcal Electronic energy + Delta-G solvation = -29011.337160 eV Core-core repulsion = 24811.841801 eV Total energy + Delta-G solvation = -4199.495360 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.17615 -40.18370 -38.81647 -37.81464 -34.91486 -34.43556 -34.18368 -33.33982 -32.40910 -31.70656 -29.91060 -28.24253 -27.20321 -26.17811 -24.06709 -23.40684 -23.17092 -22.10946 -20.70582 -19.47299 -19.26132 -18.48151 -18.17456 -17.86945 -17.21187 -16.80251 -16.15187 -15.71175 -15.55740 -15.33355 -15.00287 -14.76447 -14.47671 -14.00368 -13.93211 -13.77141 -13.56871 -13.33867 -13.21027 -13.06711 -12.63176 -12.49474 -12.44279 -12.19303 -11.93940 -11.86216 -11.69206 -11.50107 -11.24609 -11.04881 -10.90531 -10.64954 -10.63334 -10.51150 -10.21127 -10.02913 -9.66411 -9.62780 -9.31823 -8.67352 -8.27112 -8.22003 -6.36215 -3.88006 1.23242 1.95725 2.36133 2.87666 2.97364 3.01033 3.05553 3.10501 3.67177 3.89658 4.00127 4.05028 4.38744 4.39357 4.45287 4.62363 4.64998 4.82782 4.87043 4.95445 5.03980 5.14035 5.15670 5.20218 5.31040 5.36688 5.39239 5.47349 5.53879 5.61742 5.67053 5.72611 5.77145 5.82440 5.88206 5.94940 6.03254 6.16047 6.30895 6.53641 6.94839 7.14590 7.39924 7.52485 7.92654 7.99549 8.08829 8.54059 8.89725 9.36774 9.76713 10.76837 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011150 B = 0.002426 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.680119 B =11539.238971 C =13248.941935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.152 4.152 4 C 0.081 3.919 5 H 0.050 0.950 6 C 0.114 3.886 7 N -0.731 5.731 8 C 0.516 3.484 9 O -0.532 6.532 10 C -0.067 4.067 11 C -0.184 4.184 12 C 0.006 3.994 13 N -0.366 5.366 14 O 0.096 5.904 15 C -0.046 4.046 16 N -0.660 5.660 17 C 0.047 3.953 18 C 0.449 3.551 19 O -0.562 6.562 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.399 0.601 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.190 0.810 42 H 0.214 0.786 43 H 0.348 0.652 44 H 0.088 0.912 45 H 0.044 0.956 46 H 0.370 0.630 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.739 19.869 10.250 23.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.101 4.101 3 C -0.209 4.209 4 C -0.030 4.030 5 H 0.067 0.933 6 C -0.010 4.010 7 N -0.385 5.385 8 C 0.302 3.698 9 O -0.408 6.408 10 C -0.107 4.107 11 C -0.188 4.188 12 C -0.173 4.173 13 N -0.070 5.070 14 O 0.032 5.968 15 C -0.128 4.128 16 N -0.294 5.294 17 C -0.086 4.086 18 C 0.235 3.765 19 O -0.444 6.444 20 N -0.230 5.230 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.234 0.766 39 H 0.127 0.873 40 H 0.132 0.868 41 H 0.207 0.793 42 H 0.231 0.769 43 H 0.169 0.831 44 H 0.107 0.893 45 H 0.062 0.938 46 H 0.203 0.797 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.222 20.582 11.056 23.742 hybrid contribution 2.830 -0.813 -1.119 3.150 sum 7.052 19.769 9.937 23.223 Atomic orbital electron populations 1.21809 0.94251 1.03444 1.00600 1.21036 0.97214 0.94806 0.97036 1.21933 1.00701 0.96249 1.02056 1.21837 0.97260 0.89330 0.94541 0.93252 1.21752 1.01832 0.95021 0.82347 1.46057 1.57353 1.28887 1.06179 1.20457 0.79538 0.85593 0.84261 1.90738 1.38626 1.24915 1.86548 1.19915 1.02990 0.99707 0.88096 1.20711 0.95864 1.02196 1.00077 1.24959 0.98746 1.00604 0.93015 1.73869 1.04109 1.07903 1.21128 1.84809 1.19751 1.49533 1.42708 1.25746 0.98595 0.98307 0.90149 1.59976 1.48592 0.99850 1.21015 1.21788 0.93516 0.93467 0.99828 1.19676 0.87050 0.85505 0.84306 1.90578 1.22080 1.81856 1.49860 1.42217 1.20137 1.10536 1.50113 1.19420 1.07048 0.83316 1.33619 0.86285 1.25044 0.98343 0.95177 0.97604 1.69619 1.38633 1.01701 1.42070 0.86675 0.84184 0.78492 0.80030 1.19676 1.20158 1.19504 0.93075 0.93507 0.90524 0.90692 0.92907 0.92425 0.92474 0.89775 0.90657 0.76582 0.87301 0.86831 0.79318 0.76903 0.83120 0.89334 0.93767 0.79747 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.68 37.16 0.32 -1.27 16 2 C -0.08 -0.80 2.84 -90.62 -0.26 -1.06 16 3 C -0.15 -1.22 8.71 37.16 0.32 -0.89 16 4 C 0.08 0.79 2.01 -67.71 -0.14 0.66 16 5 H 0.05 0.43 7.84 -51.93 -0.41 0.03 16 6 C 0.11 1.10 4.60 -4.04 -0.02 1.08 16 7 N -0.73 -6.33 4.98 -60.29 -0.30 -6.63 16 8 C 0.52 5.08 7.82 -10.99 -0.09 4.99 16 9 O -0.53 -7.46 16.03 5.56 0.09 -7.37 16 10 C -0.07 -0.45 6.28 -29.04 -0.18 -0.63 16 11 C -0.18 -1.61 4.82 -104.42 -0.50 -2.11 16 12 C 0.01 0.06 12.16 -17.06 -0.21 -0.15 16 13 N -0.37 -4.32 12.07 30.35 0.37 -3.95 16 14 O 0.10 0.98 11.20 17.19 0.19 1.18 16 15 C -0.05 -0.35 12.26 29.74 0.36 0.01 16 16 N -0.66 -8.61 5.12 -107.99 -0.55 -9.16 16 17 C 0.05 0.67 5.93 -4.98 -0.03 0.64 16 18 C 0.45 9.44 7.83 -10.98 -0.09 9.36 16 19 O -0.56 -14.25 15.89 5.54 0.09 -14.16 16 20 N -0.59 -13.30 5.09 -10.96 -0.06 -13.35 16 21 C -0.31 -8.34 10.16 -14.93 -0.15 -8.49 16 22 H 0.12 3.75 7.39 -52.48 -0.39 3.36 16 23 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 24 N -0.88 -25.15 13.96 55.50 0.77 -24.37 16 25 Si 0.88 18.66 27.74 -169.99 -4.71 13.95 16 26 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 27 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 28 H -0.27 -5.18 6.52 56.52 0.37 -4.81 16 29 H 0.05 0.54 6.30 -51.93 -0.33 0.22 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 1.05 7.63 -51.93 -0.40 0.66 16 32 H 0.07 0.80 7.46 -51.93 -0.39 0.41 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.45 6.87 -51.92 -0.36 0.10 16 36 H 0.08 0.97 6.15 -51.93 -0.32 0.66 16 37 H 0.08 0.71 6.86 -51.93 -0.36 0.36 16 38 H 0.40 2.80 7.40 -40.82 -0.30 2.49 16 39 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.19 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.21 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.35 4.57 6.61 -39.29 -0.26 4.31 16 44 H 0.09 1.17 7.42 -51.92 -0.39 0.79 16 45 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.37 7.27 5.76 -40.82 -0.24 7.03 16 47 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 389.36 15.07 5.87 5.87 Total: -1.00 -35.67 389.36 -5.66 -41.33 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -6.67 Total: 13.52 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -0.74 Total: 3.16 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.23 Total: -57.47 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: 0.37 Total: -20.36 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -4.71 Total: 13.95 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.67 -5.66 -41.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753839679.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.314 kcal (2) G-P(sol) polarization free energy of solvation -35.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds