Wall clock time and date at job start Tue Mar 31 2020 21:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47357 * 2 1 4 4 C 1.52999 * 109.46816 * 119.99739 * 2 1 3 5 5 H 1.08999 * 109.47354 * 181.02805 * 4 2 1 6 6 C 1.53001 * 109.47351 * 301.03067 * 4 2 1 7 7 N 1.46505 * 109.47294 * 174.99978 * 6 4 2 8 8 C 1.34775 * 119.99950 * 179.97438 * 7 6 4 9 9 O 1.21280 * 119.99714 * 0.02562 * 8 7 6 10 10 C 1.50694 * 120.00004 * 179.97438 * 8 7 6 11 11 C 1.50695 * 109.47438 * 180.02562 * 10 8 7 12 12 C 1.41376 * 128.00823 * 89.99573 * 11 10 8 13 13 N 1.30176 * 106.39624 * 179.97438 * 12 11 10 14 14 O 1.20922 * 111.60434 * 0.02562 * 13 12 11 15 15 C 1.34035 * 111.56917 * 359.97438 * 14 13 12 16 16 N 1.46901 * 109.47222 * 61.03377 * 4 2 1 17 17 C 1.46892 * 111.00300 * 86.40965 * 16 4 2 18 18 C 1.50702 * 109.47583 * 185.24970 * 17 16 4 19 19 O 1.21296 * 119.99503 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00392 * 180.02562 * 18 17 16 21 21 C 1.37098 * 120.00121 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99766 * 359.97438 * 21 20 18 23 23 C 1.38944 * 120.00044 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00118 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99960 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.47180 * 89.99763 * 25 23 21 27 27 H 1.48505 * 109.47039 * 209.99552 * 25 23 21 28 28 H 1.48497 * 109.47441 * 329.99611 * 25 23 21 29 29 H 1.08992 * 109.47555 * 299.99945 * 1 2 3 30 30 H 1.09005 * 109.46839 * 60.00369 * 1 2 3 31 31 H 1.08999 * 109.46968 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47269 * 239.99927 * 2 1 3 33 33 H 1.08993 * 109.47745 * 174.50741 * 3 2 1 34 34 H 1.08997 * 109.47292 * 294.51181 * 3 2 1 35 35 H 1.09008 * 109.47254 * 54.50456 * 3 2 1 36 36 H 1.08998 * 109.46943 * 54.99796 * 6 4 2 37 37 H 1.09000 * 109.47075 * 295.00247 * 6 4 2 38 38 H 0.96994 * 119.99758 * 0.02562 * 7 6 4 39 39 H 1.08998 * 109.47161 * 60.00159 * 10 8 7 40 40 H 1.09000 * 109.47340 * 300.00315 * 10 8 7 41 41 H 1.07997 * 126.80137 * 359.71270 * 12 11 10 42 42 H 1.07996 * 126.78385 * 180.02562 * 15 14 13 43 43 H 1.00901 * 110.99929 * 210.36348 * 16 4 2 44 44 H 1.09010 * 109.46966 * 305.24537 * 17 16 4 45 45 H 1.09002 * 109.47873 * 65.24533 * 17 16 4 46 46 H 0.97001 * 119.99617 * 359.97438 * 20 18 17 47 47 H 0.96999 * 120.00258 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1298 -0.7053 1.2586 6 6 1.5088 -0.0151 2.4984 7 7 1.8974 -0.7731 3.6903 8 6 1.5373 -0.3366 4.9136 9 8 0.8913 0.6835 5.0275 10 6 1.9365 -1.1166 6.1396 11 6 1.4135 -0.4211 7.3699 12 6 0.1683 -0.6083 8.0128 13 7 0.1545 0.2035 9.0303 14 8 1.1781 0.8429 9.1038 15 6 2.0277 0.5281 8.1160 16 7 1.5707 -2.1132 1.2369 17 6 2.4915 -2.9725 0.4809 18 6 1.9147 -4.3611 0.3803 19 8 0.8422 -4.6105 0.8890 20 7 2.5910 -5.3261 -0.2738 21 6 2.0664 -6.5895 -0.3648 22 1 1.1114 -6.8115 0.0882 23 6 2.7634 -7.5841 -1.0397 24 7 2.2608 -8.7952 -1.1264 25 14 4.4154 -7.2001 -1.8224 26 1 5.4996 -7.4530 -0.8396 27 1 4.6132 -8.0673 -3.0116 28 1 4.4468 -5.7750 -2.2384 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1255 1.4441 0.0984 34 1 1.7592 1.9271 -0.9350 35 1 1.5986 1.9840 0.8367 36 1 0.4219 0.0475 2.4459 37 1 1.9283 0.9895 2.5539 38 1 2.4143 -1.5887 3.5992 39 1 3.0233 -1.1800 6.1920 40 1 1.5162 -2.1208 6.0841 41 1 -0.6175 -1.2869 7.7158 42 1 3.0084 0.9481 7.9481 43 1 1.4416 -2.4596 2.1758 44 1 2.6308 -2.5636 -0.5200 45 1 3.4527 -3.0145 0.9931 46 1 3.4488 -5.1266 -0.6803 47 1 2.7475 -9.4897 -1.5973 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753839679.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:27 Heat of formation + Delta-G solvation = -35.907480 kcal Electronic energy + Delta-G solvation = -29012.589989 eV Core-core repulsion = 24811.841801 eV Total energy + Delta-G solvation = -4200.748189 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.89932 -41.00502 -40.24496 -38.95176 -36.01213 -35.58145 -35.22488 -34.48216 -33.68450 -33.12566 -30.65843 -29.19504 -28.00609 -27.48933 -25.47171 -24.36614 -23.90453 -22.80511 -21.46401 -21.22865 -20.27406 -20.02949 -18.89035 -18.62100 -18.12564 -17.73626 -17.26544 -16.83111 -16.74268 -16.50590 -16.03272 -15.80449 -15.46132 -15.24135 -15.01562 -14.72488 -14.50777 -14.38401 -14.18259 -14.07696 -13.98989 -13.80342 -13.33953 -13.07878 -13.03786 -12.90264 -12.68807 -12.55438 -12.38736 -12.16819 -11.97478 -11.84813 -11.73396 -11.47475 -11.39089 -11.30111 -11.00350 -10.38004 -10.32676 -10.21404 -10.09308 -9.26966 -8.38388 -5.99140 0.60258 1.23947 1.32443 1.37863 1.46990 1.63247 2.01210 2.22909 2.25641 2.45811 2.72172 3.18706 3.35864 3.38717 3.66502 3.78657 3.83368 4.01125 4.06300 4.16250 4.20097 4.24628 4.40902 4.41382 4.49428 4.57907 4.60610 4.69126 4.74026 4.76723 4.81691 4.88541 4.99450 5.12862 5.13237 5.18600 5.29802 5.40400 5.53945 5.56004 5.59997 5.93851 6.07156 6.40807 6.47608 6.63288 6.92430 7.22159 7.31370 7.44422 8.01998 8.79349 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011150 B = 0.002426 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.680119 B =11539.238971 C =13248.941935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.081 4.081 3 C -0.145 4.145 4 C 0.090 3.910 5 H 0.078 0.922 6 C 0.119 3.881 7 N -0.722 5.722 8 C 0.514 3.486 9 O -0.580 6.580 10 C -0.059 4.059 11 C -0.199 4.199 12 C -0.011 4.011 13 N -0.402 5.402 14 O 0.084 5.916 15 C -0.035 4.035 16 N -0.680 5.680 17 C 0.062 3.938 18 C 0.450 3.550 19 O -0.613 6.613 20 N -0.592 5.592 21 C -0.325 4.325 22 H 0.054 0.946 23 C -0.018 4.018 24 N -0.937 5.937 25 Si 0.965 3.035 26 H -0.255 1.255 27 H -0.280 1.280 28 H -0.229 1.229 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.410 0.590 39 H 0.147 0.853 40 H 0.126 0.874 41 H 0.197 0.803 42 H 0.256 0.744 43 H 0.345 0.655 44 H 0.111 0.889 45 H 0.088 0.912 46 H 0.390 0.610 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.090 22.073 9.378 26.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 C -0.203 4.203 4 C -0.019 4.019 5 H 0.096 0.904 6 C -0.005 4.005 7 N -0.376 5.376 8 C 0.302 3.698 9 O -0.459 6.459 10 C -0.099 4.099 11 C -0.204 4.204 12 C -0.189 4.189 13 N -0.108 5.108 14 O 0.022 5.978 15 C -0.116 4.116 16 N -0.315 5.315 17 C -0.071 4.071 18 C 0.238 3.762 19 O -0.497 6.497 20 N -0.235 5.235 21 C -0.455 4.455 22 H 0.072 0.928 23 C -0.216 4.216 24 N -0.578 5.578 25 Si 0.785 3.215 26 H -0.180 1.180 27 H -0.205 1.205 28 H -0.153 1.153 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.247 0.753 39 H 0.165 0.835 40 H 0.144 0.856 41 H 0.214 0.786 42 H 0.272 0.728 43 H 0.166 0.834 44 H 0.129 0.871 45 H 0.105 0.895 46 H 0.225 0.775 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.598 22.806 10.184 26.415 hybrid contribution 1.316 -1.485 -0.800 2.139 sum 9.914 21.322 9.383 25.317 Atomic orbital electron populations 1.21750 0.95815 1.01321 1.00894 1.21057 0.95855 0.96221 0.96958 1.21873 1.01584 0.94596 1.02262 1.21841 0.98645 0.87080 0.94366 0.90438 1.21621 1.00428 0.95617 0.82801 1.45983 1.56909 1.29005 1.05666 1.21000 0.78513 0.85069 0.85207 1.90723 1.40807 1.27179 1.87204 1.19995 1.05248 0.99178 0.85435 1.21007 0.95375 1.02988 1.00995 1.25334 0.99932 1.00580 0.93101 1.73856 1.05315 1.09150 1.22462 1.84758 1.19859 1.49540 1.43654 1.26550 0.99305 0.97187 0.88580 1.59909 1.49386 1.01244 1.20961 1.21699 0.94647 0.88734 1.01970 1.21040 0.85983 0.87628 0.81565 1.90563 1.24558 1.83297 1.51286 1.42041 1.21109 1.09108 1.51192 1.18979 1.05565 0.86274 1.34654 0.92821 1.26133 1.03577 0.94265 0.97628 1.69813 1.41245 1.03346 1.43400 0.85360 0.77127 0.80394 0.78588 1.17951 1.20527 1.15255 0.93156 0.92928 0.93740 0.90902 0.91322 0.92078 0.92589 0.92265 0.89871 0.75295 0.83523 0.85621 0.78634 0.72847 0.83391 0.87113 0.89477 0.77484 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.68 71.98 0.62 -2.41 16 2 C -0.08 -1.39 2.84 -10.80 -0.03 -1.42 16 3 C -0.15 -1.85 8.71 71.98 0.63 -1.23 16 4 C 0.09 1.47 2.01 44.92 0.09 1.56 16 5 H 0.08 0.92 7.84 -2.39 -0.02 0.90 16 6 C 0.12 2.07 4.60 86.38 0.40 2.46 16 7 N -0.72 -10.74 4.98 -463.06 -2.30 -13.05 16 8 C 0.51 9.19 7.82 87.66 0.69 9.88 16 9 O -0.58 -15.86 16.03 -3.03 -0.05 -15.91 16 10 C -0.06 -0.63 6.28 29.10 0.18 -0.45 16 11 C -0.20 -3.19 4.82 -19.74 -0.10 -3.28 16 12 C -0.01 -0.23 12.16 85.71 1.04 0.81 16 13 N -0.40 -9.67 12.07 -59.27 -0.72 -10.39 16 14 O 0.08 1.69 11.20 71.68 0.80 2.49 16 15 C -0.03 -0.47 12.26 67.18 0.82 0.36 16 16 N -0.68 -16.21 5.12 -495.58 -2.54 -18.75 16 17 C 0.06 1.55 5.93 85.56 0.51 2.05 16 18 C 0.45 18.51 7.83 87.66 0.69 19.20 16 19 O -0.61 -31.99 15.89 -3.08 -0.05 -32.04 16 20 N -0.59 -26.04 5.09 -306.98 -1.56 -27.60 16 21 C -0.33 -18.36 10.16 84.04 0.85 -17.51 16 22 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 23 C -0.02 -0.96 5.50 84.92 0.47 -0.49 16 24 N -0.94 -55.48 13.96 21.66 0.30 -55.18 16 25 Si 0.97 37.01 27.74 68.60 1.90 38.91 16 26 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 27 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 28 H -0.23 -7.24 6.52 99.48 0.65 -6.59 16 29 H 0.05 1.07 6.30 -2.39 -0.02 1.06 16 30 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.04 1.24 7.63 -2.39 -0.02 1.22 16 32 H 0.07 1.31 7.46 -2.39 -0.02 1.29 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.74 6.87 -2.38 -0.02 0.72 16 36 H 0.06 1.35 6.15 -2.39 -0.01 1.34 16 37 H 0.08 1.36 6.86 -2.39 -0.02 1.34 16 38 H 0.41 4.39 7.40 -92.71 -0.69 3.70 16 39 H 0.15 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.20 3.41 8.06 -2.91 -0.02 3.38 16 42 H 0.26 0.87 8.06 -2.91 -0.02 0.84 16 43 H 0.35 8.48 6.61 -89.69 -0.59 7.89 16 44 H 0.11 2.39 7.42 -2.38 -0.02 2.37 16 45 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.39 13.90 5.76 -92.71 -0.53 13.36 16 47 H 0.28 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -86.20 389.36 1.81 -84.39 By element: Atomic # 1 Polarization: 38.41 SS G_CDS: -0.84 Total: 37.57 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 6.86 Total: 9.55 kcal Atomic # 7 Polarization: -118.15 SS G_CDS: -6.82 Total: -124.96 kcal Atomic # 8 Polarization: -46.16 SS G_CDS: 0.70 Total: -45.45 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 1.90 Total: 38.91 kcal Total: -86.20 1.81 -84.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753839679.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.482 kcal (2) G-P(sol) polarization free energy of solvation -86.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds