Wall clock time and date at job start Tue Mar 31 2020 20:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46831 * 2 1 4 4 C 1.50700 * 109.47299 * 179.97438 * 3 2 1 5 5 C 1.35317 * 126.65847 * 89.99923 * 4 3 2 6 6 C 1.42282 * 103.91833 * 180.02562 * 5 4 3 7 7 C 1.48328 * 126.93999 * 179.97438 * 6 5 4 8 8 O 1.21500 * 119.99570 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00057 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00256 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46596 * 325.00243 * 10 9 7 12 12 C 1.53006 * 109.47249 * 84.99846 * 10 9 7 13 13 C 1.52997 * 109.47473 * 205.00145 * 10 9 7 14 14 N 1.46894 * 109.46972 * 54.99834 * 13 10 9 15 15 C 1.46901 * 110.99870 * 180.02562 * 14 13 10 16 16 C 1.50704 * 109.47178 * 179.97438 * 15 14 13 17 17 O 1.21297 * 119.99726 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00047 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00091 * 179.97438 * 18 16 15 20 20 H 1.08003 * 120.00068 * 0.02562 * 19 18 16 21 21 C 1.38947 * 120.00275 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99940 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99983 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47202 * 89.99567 * 23 21 19 25 25 H 1.48499 * 109.47076 * 210.00074 * 23 21 19 26 26 H 1.48508 * 109.46850 * 329.99385 * 23 21 19 27 27 N 1.30986 * 106.11838 * 0.26610 * 6 5 4 28 28 O 1.20906 * 111.44191 * 359.53079 * 27 6 5 29 29 H 1.09003 * 109.46795 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47476 * 299.99542 * 1 2 3 31 31 H 1.09004 * 109.47385 * 60.00186 * 1 2 3 32 32 H 1.09002 * 109.47304 * 240.00618 * 2 1 3 33 33 H 1.08999 * 109.46934 * 119.99709 * 2 1 3 34 34 H 1.09004 * 109.47181 * 60.00131 * 3 2 1 35 35 H 1.09002 * 109.47676 * 300.00338 * 3 2 1 36 36 H 1.07994 * 128.04646 * 0.02562 * 5 4 3 37 37 H 0.97005 * 120.00370 * 0.02562 * 9 7 6 38 38 H 1.09001 * 109.47002 * 60.00085 * 12 10 9 39 39 H 1.08993 * 109.46955 * 180.02562 * 12 10 9 40 40 H 1.09000 * 109.47050 * 300.00351 * 12 10 9 41 41 H 1.08993 * 109.47322 * 174.99832 * 13 10 9 42 42 H 1.09002 * 109.47196 * 294.99955 * 13 10 9 43 43 H 1.00900 * 111.00304 * 56.04803 * 14 13 10 44 44 H 1.08998 * 109.47443 * 299.99888 * 15 14 13 45 45 H 1.08999 * 109.47029 * 60.00268 * 15 14 13 46 46 H 0.96995 * 119.99696 * 0.02562 * 18 16 15 47 47 H 0.97010 * 119.99982 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.3553 1.4425 -1.0846 6 6 5.6673 1.4421 -0.5340 7 6 6.9480 1.4413 -1.2823 8 8 6.9416 1.4414 -2.4972 9 7 8.1186 1.4404 -0.6145 10 6 9.3836 1.4402 -1.3534 11 1 9.2723 0.8512 -2.2639 12 6 9.7612 2.8773 -1.7187 13 6 10.4832 0.8297 -0.4823 14 7 10.0671 -0.5055 -0.0329 15 6 11.1005 -1.1236 0.8086 16 6 10.6388 -2.4886 1.2499 17 8 9.5553 -2.9053 0.8985 18 7 11.4295 -3.2458 2.0360 19 6 11.0093 -4.4873 2.4380 20 1 10.0449 -4.8588 2.1244 21 6 11.8246 -5.2682 3.2480 22 7 11.4221 -6.4584 3.6329 23 14 13.4930 -4.6261 3.7899 24 1 13.3476 -3.8893 5.0709 25 1 14.4252 -5.7667 3.9778 26 1 14.0326 -3.7118 2.7514 27 7 5.5157 1.4361 0.7670 28 8 4.3468 1.4422 1.0758 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 4.0709 1.4427 -2.1264 37 1 8.1237 1.4400 0.3556 38 1 9.8724 3.4662 -0.8082 39 1 10.7021 2.8770 -2.2688 40 1 8.9778 3.3122 -2.3393 41 1 11.4025 0.7478 -1.0619 42 1 10.6559 1.4673 0.3847 43 1 9.8387 -1.0965 -0.8182 44 1 12.0244 -1.2190 0.2382 45 1 11.2770 -0.4993 1.6845 46 1 12.2955 -2.9120 2.3180 47 1 11.9911 -7.0035 4.1987 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754289373.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:06 Heat of formation + Delta-G solvation = -18.521510 kcal Electronic energy + Delta-G solvation = -28446.867075 eV Core-core repulsion = 24246.872798 eV Total energy + Delta-G solvation = -4199.994276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.23245 -39.86092 -38.49687 -36.80818 -36.05558 -34.41169 -34.10386 -33.72187 -32.02394 -31.66529 -30.91839 -27.79335 -27.36832 -25.39069 -24.79257 -23.16677 -22.98030 -22.11977 -21.21566 -20.19338 -19.38920 -18.39033 -17.94053 -17.76147 -17.02030 -16.68318 -15.90409 -15.57481 -15.31186 -15.10642 -14.88007 -14.74174 -14.29714 -14.07897 -14.05467 -13.87573 -13.65859 -13.36481 -13.21036 -12.80144 -12.71051 -12.63716 -12.26312 -12.13354 -12.01295 -11.78099 -11.73996 -11.72565 -11.65778 -11.16926 -11.10161 -11.04549 -10.60543 -10.59562 -10.34652 -9.98177 -9.64145 -9.58031 -9.20162 -8.62164 -8.23149 -8.17510 -6.31492 -3.82983 0.99463 1.48486 2.69758 2.87467 3.01361 3.06089 3.11356 3.14155 3.72849 3.82470 3.99255 4.09698 4.22051 4.54735 4.56328 4.65234 4.76742 4.81361 4.83629 4.96058 5.01914 5.14993 5.20065 5.21703 5.25083 5.31609 5.33963 5.35557 5.47499 5.48827 5.59174 5.63055 5.73394 5.75420 5.76830 5.80569 5.88782 5.90249 5.96983 6.33097 6.99448 7.34222 7.48241 7.57526 7.85890 8.04230 8.13928 8.59173 8.94547 9.41752 9.82045 10.81654 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009913 B = 0.002395 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.989275 B =11689.875717 C =13977.180717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.038 4.038 4 C -0.033 4.033 5 C -0.182 4.182 6 C -0.024 4.024 7 C 0.602 3.398 8 O -0.532 6.532 9 N -0.690 5.690 10 C 0.144 3.856 11 H 0.090 0.910 12 C -0.162 4.162 13 C 0.048 3.952 14 N -0.668 5.668 15 C 0.048 3.952 16 C 0.449 3.551 17 O -0.563 6.563 18 N -0.590 5.590 19 C -0.305 4.305 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.881 3.119 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 N -0.325 5.325 28 O 0.124 5.876 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.179 0.821 37 H 0.412 0.588 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.079 0.921 43 H 0.353 0.647 44 H 0.046 0.954 45 H 0.088 0.912 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.348 21.666 -8.249 26.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.076 4.076 4 C -0.096 4.096 5 C -0.204 4.204 6 C -0.183 4.183 7 C 0.386 3.614 8 O -0.407 6.407 9 N -0.341 5.341 10 C 0.040 3.960 11 H 0.108 0.892 12 C -0.220 4.220 13 C -0.082 4.082 14 N -0.301 5.301 15 C -0.084 4.084 16 C 0.235 3.765 17 O -0.445 6.445 18 N -0.230 5.230 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.707 3.293 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 N -0.024 5.024 28 O 0.048 5.952 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.196 0.804 37 H 0.248 0.752 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.097 0.903 43 H 0.172 0.828 44 H 0.064 0.936 45 H 0.106 0.894 46 H 0.203 0.797 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.447 21.388 -7.716 25.921 hybrid contribution 1.862 0.003 -0.334 1.892 sum -10.585 21.391 -8.050 25.187 Atomic orbital electron populations 1.21762 0.94808 1.02335 1.02020 1.21590 0.96387 0.94875 1.03532 1.20262 0.83201 0.99196 1.04933 1.24499 0.96242 1.03370 0.85512 1.22399 0.89717 1.06889 1.01418 1.23480 0.96753 1.07871 0.90187 1.16823 0.81713 0.76602 0.86257 1.90778 1.86854 1.50570 1.12528 1.45693 1.04453 1.72810 1.11179 1.21045 0.82506 0.96870 0.95613 0.89159 1.22149 1.02143 0.95749 1.02007 1.22320 0.95463 0.91797 0.98645 1.60034 1.41409 1.03103 1.25534 1.21710 0.92953 0.95611 0.98152 1.19701 0.86563 0.86516 0.83763 1.90581 1.22065 1.73272 1.58571 1.42198 1.17611 1.16998 1.46193 1.19428 1.05641 0.90154 1.28119 0.86319 1.25045 0.98383 0.95597 0.97190 1.69626 1.37677 1.09520 1.35296 0.86660 0.84027 0.79154 0.79455 1.19587 1.20181 1.19567 1.74222 0.97137 1.15490 1.15581 1.84794 1.11115 1.65848 1.33447 0.92159 0.92384 0.92489 0.91139 0.91009 0.89085 0.88318 0.80367 0.75158 0.92157 0.91270 0.91762 0.93521 0.90273 0.82770 0.93647 0.89416 0.79709 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 37.16 0.37 -0.34 16 2 C -0.13 -0.76 5.92 -26.73 -0.16 -0.92 16 3 C -0.04 -0.21 5.78 -27.88 -0.16 -0.37 16 4 C -0.03 -0.31 6.73 -35.35 -0.24 -0.55 16 5 C -0.18 -1.98 10.92 -39.07 -0.43 -2.40 16 6 C -0.02 -0.32 7.19 -82.52 -0.59 -0.91 16 7 C 0.60 8.75 7.81 -12.11 -0.09 8.65 16 8 O -0.53 -8.76 16.61 5.37 0.09 -8.67 16 9 N -0.69 -8.86 4.80 -54.59 -0.26 -9.12 16 10 C 0.14 1.61 2.81 -67.93 -0.19 1.42 16 11 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 12 C -0.16 -1.45 9.48 37.16 0.35 -1.10 16 13 C 0.05 0.52 5.24 -3.83 -0.02 0.50 16 14 N -0.67 -10.13 5.85 -115.06 -0.67 -10.80 16 15 C 0.05 0.79 6.17 -4.97 -0.03 0.76 16 16 C 0.45 10.27 7.82 -10.98 -0.09 10.18 16 17 O -0.56 -15.40 15.78 5.54 0.09 -15.31 16 18 N -0.59 -14.16 5.09 -10.96 -0.06 -14.22 16 19 C -0.30 -8.71 10.16 -14.94 -0.15 -8.87 16 20 H 0.12 3.89 7.39 -52.48 -0.39 3.51 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.95 13.96 55.50 0.77 -25.18 16 23 Si 0.88 19.46 27.74 -169.99 -4.71 14.74 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 27 N -0.32 -4.45 11.84 33.30 0.39 -4.06 16 28 O 0.12 1.46 11.18 17.27 0.19 1.66 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.18 1.62 8.06 -52.49 -0.42 1.19 16 37 H 0.41 5.31 8.36 -40.82 -0.34 4.96 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.35 5.83 8.43 -39.29 -0.33 5.50 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 46 H 0.37 7.76 5.76 -40.82 -0.24 7.52 16 47 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 402.90 15.07 6.07 6.07 Total: -1.00 -35.38 402.90 -6.82 -42.20 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -7.20 Total: 15.61 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -1.53 Total: 7.08 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: 0.18 Total: -63.38 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: 0.37 Total: -22.33 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.71 Total: 14.74 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.38 -6.82 -42.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754289373.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.678 kcal (2) G-P(sol) polarization free energy of solvation -35.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds