Wall clock time and date at job start Tue Mar 31 2020 20:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46831 * 2 1 4 4 C 1.50700 * 109.47299 * 179.97438 * 3 2 1 5 5 C 1.35317 * 126.65847 * 89.99923 * 4 3 2 6 6 C 1.42282 * 103.91833 * 180.02562 * 5 4 3 7 7 C 1.48328 * 126.93999 * 179.97438 * 6 5 4 8 8 O 1.21500 * 119.99570 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00057 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00256 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46596 * 325.00243 * 10 9 7 12 12 C 1.53006 * 109.47249 * 84.99846 * 10 9 7 13 13 C 1.52997 * 109.47473 * 205.00145 * 10 9 7 14 14 N 1.46894 * 109.46972 * 54.99834 * 13 10 9 15 15 C 1.46901 * 110.99870 * 180.02562 * 14 13 10 16 16 C 1.50704 * 109.47178 * 179.97438 * 15 14 13 17 17 O 1.21297 * 119.99726 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00047 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00091 * 179.97438 * 18 16 15 20 20 H 1.08003 * 120.00068 * 0.02562 * 19 18 16 21 21 C 1.38947 * 120.00275 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99940 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99983 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47202 * 89.99567 * 23 21 19 25 25 H 1.48499 * 109.47076 * 210.00074 * 23 21 19 26 26 H 1.48508 * 109.46850 * 329.99385 * 23 21 19 27 27 N 1.30986 * 106.11838 * 0.26610 * 6 5 4 28 28 O 1.20906 * 111.44191 * 359.53079 * 27 6 5 29 29 H 1.09003 * 109.46795 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47476 * 299.99542 * 1 2 3 31 31 H 1.09004 * 109.47385 * 60.00186 * 1 2 3 32 32 H 1.09002 * 109.47304 * 240.00618 * 2 1 3 33 33 H 1.08999 * 109.46934 * 119.99709 * 2 1 3 34 34 H 1.09004 * 109.47181 * 60.00131 * 3 2 1 35 35 H 1.09002 * 109.47676 * 300.00338 * 3 2 1 36 36 H 1.07994 * 128.04646 * 0.02562 * 5 4 3 37 37 H 0.97005 * 120.00370 * 0.02562 * 9 7 6 38 38 H 1.09001 * 109.47002 * 60.00085 * 12 10 9 39 39 H 1.08993 * 109.46955 * 180.02562 * 12 10 9 40 40 H 1.09000 * 109.47050 * 300.00351 * 12 10 9 41 41 H 1.08993 * 109.47322 * 174.99832 * 13 10 9 42 42 H 1.09002 * 109.47196 * 294.99955 * 13 10 9 43 43 H 1.00900 * 111.00304 * 56.04803 * 14 13 10 44 44 H 1.08998 * 109.47443 * 299.99888 * 15 14 13 45 45 H 1.08999 * 109.47029 * 60.00268 * 15 14 13 46 46 H 0.96995 * 119.99696 * 0.02562 * 18 16 15 47 47 H 0.97010 * 119.99982 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.3553 1.4425 -1.0846 6 6 5.6673 1.4421 -0.5340 7 6 6.9480 1.4413 -1.2823 8 8 6.9416 1.4414 -2.4972 9 7 8.1186 1.4404 -0.6145 10 6 9.3836 1.4402 -1.3534 11 1 9.2723 0.8512 -2.2639 12 6 9.7612 2.8773 -1.7187 13 6 10.4832 0.8297 -0.4823 14 7 10.0671 -0.5055 -0.0329 15 6 11.1005 -1.1236 0.8086 16 6 10.6388 -2.4886 1.2499 17 8 9.5553 -2.9053 0.8985 18 7 11.4295 -3.2458 2.0360 19 6 11.0093 -4.4873 2.4380 20 1 10.0449 -4.8588 2.1244 21 6 11.8246 -5.2682 3.2480 22 7 11.4221 -6.4584 3.6329 23 14 13.4930 -4.6261 3.7899 24 1 13.3476 -3.8893 5.0709 25 1 14.4252 -5.7667 3.9778 26 1 14.0326 -3.7118 2.7514 27 7 5.5157 1.4361 0.7670 28 8 4.3468 1.4422 1.0758 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 4.0709 1.4427 -2.1264 37 1 8.1237 1.4400 0.3556 38 1 9.8724 3.4662 -0.8082 39 1 10.7021 2.8770 -2.2688 40 1 8.9778 3.3122 -2.3393 41 1 11.4025 0.7478 -1.0619 42 1 10.6559 1.4673 0.3847 43 1 9.8387 -1.0965 -0.8182 44 1 12.0244 -1.2190 0.2382 45 1 11.2770 -0.4993 1.6845 46 1 12.2955 -2.9120 2.3180 47 1 11.9911 -7.0035 4.1987 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754289373.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:05 Heat of formation + Delta-G solvation = -46.958728 kcal Electronic energy + Delta-G solvation = -28448.100205 eV Core-core repulsion = 24246.872798 eV Total energy + Delta-G solvation = -4201.227407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.17411 -40.94233 -40.29445 -37.93275 -36.62200 -36.11084 -35.31112 -34.98413 -33.76607 -32.77779 -31.87343 -29.13367 -27.94533 -26.73961 -26.05619 -24.49216 -23.88146 -22.70820 -22.09127 -21.29593 -21.17553 -20.28825 -18.89365 -18.67406 -18.05331 -17.91910 -17.43085 -16.81566 -16.49608 -16.18134 -16.02254 -15.73227 -15.65024 -15.29030 -15.11846 -14.88167 -14.66318 -14.56968 -14.32246 -14.16723 -14.07926 -13.47978 -13.33034 -13.17335 -13.06019 -12.85326 -12.78959 -12.54856 -12.45082 -12.43222 -12.17835 -11.99950 -11.91936 -11.60810 -11.53613 -11.53003 -11.46175 -10.49088 -10.45647 -10.27214 -10.20707 -9.38614 -8.43243 -6.04665 0.02646 0.62617 1.28592 1.34840 1.43621 1.79871 1.93688 1.99991 2.07903 2.21699 2.66996 2.88497 3.12882 3.33561 3.47868 3.74218 3.88556 4.06475 4.07091 4.10685 4.14067 4.17691 4.26640 4.31351 4.43906 4.53186 4.60292 4.61801 4.70807 4.73230 4.78131 4.81200 4.91997 4.96737 4.97227 5.23204 5.28642 5.30595 5.37209 5.47682 5.50341 5.86150 5.99393 6.25648 6.28793 6.57558 6.85961 6.89453 7.02855 7.37385 7.94796 8.74601 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009913 B = 0.002395 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.989275 B =11689.875717 C =13977.180717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C -0.034 4.034 4 C -0.016 4.016 5 C -0.195 4.195 6 C -0.048 4.048 7 C 0.596 3.404 8 O -0.560 6.560 9 N -0.685 5.685 10 C 0.141 3.859 11 H 0.072 0.928 12 C -0.152 4.152 13 C 0.055 3.945 14 N -0.689 5.689 15 C 0.064 3.936 16 C 0.445 3.555 17 O -0.618 6.618 18 N -0.590 5.590 19 C -0.330 4.330 20 H 0.052 0.948 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.968 3.032 24 H -0.256 1.256 25 H -0.275 1.275 26 H -0.229 1.229 27 N -0.348 5.348 28 O 0.121 5.879 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.110 0.890 35 H 0.125 0.875 36 H 0.193 0.807 37 H 0.412 0.588 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.099 0.901 43 H 0.340 0.660 44 H 0.082 0.918 45 H 0.119 0.881 46 H 0.391 0.609 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.339 24.733 -7.984 27.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C -0.072 4.072 4 C -0.079 4.079 5 C -0.217 4.217 6 C -0.206 4.206 7 C 0.380 3.620 8 O -0.438 6.438 9 N -0.335 5.335 10 C 0.037 3.963 11 H 0.090 0.910 12 C -0.211 4.211 13 C -0.074 4.074 14 N -0.321 5.321 15 C -0.068 4.068 16 C 0.233 3.767 17 O -0.502 6.502 18 N -0.232 5.232 19 C -0.459 4.459 20 H 0.070 0.930 21 C -0.216 4.216 22 N -0.576 5.576 23 Si 0.787 3.213 24 H -0.181 1.181 25 H -0.200 1.200 26 H -0.153 1.153 27 N -0.048 5.048 28 O 0.045 5.955 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.128 0.872 35 H 0.143 0.857 36 H 0.210 0.790 37 H 0.248 0.752 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.117 0.883 43 H 0.158 0.842 44 H 0.099 0.901 45 H 0.137 0.863 46 H 0.226 0.774 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.413 24.496 -7.447 27.639 hybrid contribution 1.052 -1.001 -0.453 1.521 sum -9.361 23.495 -7.900 26.496 Atomic orbital electron populations 1.21740 0.93435 1.02386 1.03041 1.21577 0.97528 0.94943 1.02404 1.20510 0.80242 0.99256 1.07170 1.25161 0.97549 1.00927 0.84221 1.22667 0.88909 1.07542 1.02598 1.23640 0.97439 1.08919 0.90585 1.17043 0.82485 0.76349 0.86093 1.90744 1.87334 1.52213 1.13538 1.45791 1.04768 1.71801 1.11187 1.21203 0.81980 0.98226 0.94895 0.90991 1.22071 1.02545 0.93887 1.02564 1.22399 0.95939 0.89409 0.99659 1.60028 1.42065 1.04546 1.25495 1.21638 0.93990 0.91248 0.99919 1.21094 0.85381 0.88486 0.81697 1.90561 1.24620 1.75048 1.60002 1.42014 1.18734 1.15618 1.46790 1.18987 1.04069 0.92857 1.30017 0.93029 1.26171 1.03827 0.95328 0.96235 1.69815 1.40134 1.11487 1.36128 0.85326 0.76453 0.79254 0.80221 1.18084 1.20015 1.15257 1.74202 0.98173 1.16673 1.15761 1.84750 1.10914 1.65533 1.34342 0.92654 0.91531 0.91285 0.92038 0.92513 0.87153 0.85729 0.78958 0.75183 0.90859 0.89036 0.93408 0.90825 0.88294 0.84156 0.90074 0.86308 0.77365 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 71.98 0.71 -0.46 16 2 C -0.13 -1.43 5.92 30.59 0.18 -1.24 16 3 C -0.03 -0.32 5.78 29.85 0.17 -0.14 16 4 C -0.02 -0.28 6.73 25.01 0.17 -0.11 16 5 C -0.19 -4.27 10.92 22.60 0.25 -4.02 16 6 C -0.05 -1.34 7.19 42.96 0.31 -1.03 16 7 C 0.60 17.91 7.81 86.93 0.68 18.59 16 8 O -0.56 -19.16 16.61 -3.71 -0.06 -19.22 16 9 N -0.69 -17.63 4.80 -444.94 -2.14 -19.76 16 10 C 0.14 2.98 2.81 44.99 0.13 3.10 16 11 H 0.07 1.80 7.58 -2.39 -0.02 1.78 16 12 C -0.15 -2.41 9.48 71.98 0.68 -1.73 16 13 C 0.05 1.02 5.24 86.30 0.45 1.47 16 14 N -0.69 -19.75 5.85 -517.95 -3.03 -22.77 16 15 C 0.06 1.88 6.17 85.56 0.53 2.40 16 16 C 0.45 20.28 7.82 87.66 0.69 20.96 16 17 O -0.62 -35.24 15.78 -3.08 -0.05 -35.29 16 18 N -0.59 -27.97 5.09 -306.98 -1.56 -29.53 16 19 C -0.33 -19.64 10.16 84.04 0.85 -18.78 16 20 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 21 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 22 N -0.94 -57.05 13.96 21.66 0.30 -56.74 16 23 Si 0.97 38.82 27.74 68.60 1.90 40.72 16 24 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 25 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 26 H -0.23 -7.64 6.52 99.48 0.65 -6.99 16 27 N -0.35 -9.82 11.84 -49.50 -0.59 -10.40 16 28 O 0.12 2.88 11.18 71.96 0.80 3.68 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.19 3.48 8.06 -2.91 -0.02 3.46 16 37 H 0.41 10.57 8.36 -92.70 -0.78 9.79 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.34 11.18 8.43 -89.69 -0.76 10.42 16 44 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 45 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 46 H 0.39 15.12 5.76 -92.71 -0.53 14.59 16 47 H 0.28 15.53 8.31 -92.70 -0.77 14.76 16 Total: -1.00 -85.24 402.90 0.74 -84.49 By element: Atomic # 1 Polarization: 47.42 SS G_CDS: -1.11 Total: 46.31 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: 6.27 Total: 18.51 kcal Atomic # 7 Polarization: -132.20 SS G_CDS: -7.01 Total: -139.21 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: 0.69 Total: -50.83 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 1.90 Total: 40.72 kcal Total: -85.24 0.74 -84.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754289373.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.536 kcal (2) G-P(sol) polarization free energy of solvation -85.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds