Wall clock time and date at job start Tue Mar 31 2020 20:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47465 * 2 1 4 4 N 1.29947 * 126.28546 * 89.97041 * 3 2 1 5 5 O 1.21306 * 110.24765 * 180.02562 * 4 3 2 6 6 C 1.33640 * 109.81214 * 0.02562 * 5 4 3 7 7 C 1.50698 * 126.55090 * 179.97438 * 6 5 4 8 8 O 1.42894 * 109.47245 * 270.02374 * 7 6 5 9 9 C 1.42897 * 114.00319 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47670 * 179.97438 * 9 8 7 11 11 O 1.21286 * 119.99454 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00510 * 180.02562 * 10 9 8 13 13 C 1.47026 * 125.64695 * 359.97438 * 12 10 9 14 14 C 1.54319 * 107.27305 * 178.97771 * 13 12 10 15 15 H 1.09004 * 110.71894 * 96.34703 * 14 13 12 16 16 N 1.46498 * 110.71865 * 219.44531 * 14 13 12 17 17 C 1.36943 * 119.99752 * 273.26644 * 16 14 13 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 14 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 14 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47213 * 60.00246 * 21 19 17 23 23 H 1.48502 * 109.47317 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47081 * 299.99875 * 21 19 17 25 25 C 1.55154 * 102.93928 * 337.80720 * 14 13 12 26 26 C 1.47415 * 125.65206 * 180.02562 * 12 10 9 27 27 H 1.09000 * 110.37086 * 85.24958 * 26 12 10 28 28 C 1.53007 * 110.36726 * 323.03755 * 26 12 10 29 29 N 1.31130 * 106.89691 * 0.22264 * 6 5 4 30 30 H 1.09006 * 109.46860 * 300.00507 * 1 2 3 31 31 H 1.08998 * 109.46841 * 59.99637 * 1 2 3 32 32 H 1.08992 * 109.47129 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47065 * 239.99899 * 2 1 3 34 34 H 1.09005 * 109.46957 * 119.99961 * 2 1 3 35 35 H 1.09008 * 109.46992 * 150.02330 * 7 6 5 36 36 H 1.08996 * 109.47216 * 30.02321 * 7 6 5 37 37 H 1.09005 * 109.46973 * 59.99813 * 9 8 7 38 38 H 1.09006 * 109.47548 * 300.00303 * 9 8 7 39 39 H 1.09003 * 109.88485 * 59.55446 * 13 12 10 40 40 H 1.09007 * 109.88016 * 298.39827 * 13 12 10 41 41 H 0.97001 * 120.00384 * 93.55000 * 16 14 13 42 42 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 43 43 H 1.09002 * 111.00391 * 153.57915 * 25 14 13 44 44 H 1.08996 * 111.00552 * 277.42291 * 25 14 13 45 45 H 1.09005 * 109.46394 * 61.45327 * 28 26 12 46 46 H 1.08995 * 109.47277 * 181.45624 * 28 26 12 47 47 H 1.08998 * 109.47136 * 301.45950 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2883 2.1460 1.0475 5 8 2.6767 3.2453 0.7123 6 6 2.7057 3.3283 -0.6212 7 6 3.1272 4.5232 -1.4370 8 8 1.9901 5.3495 -1.6942 9 6 2.2822 6.5169 -2.4648 10 6 1.0178 7.3095 -2.6751 11 8 -0.0302 6.9138 -2.2103 12 7 1.0516 8.4579 -3.3796 13 6 2.2480 9.0506 -3.9952 14 6 1.8018 10.3409 -4.7145 15 1 1.9686 11.2126 -4.0816 16 7 2.5009 10.4897 -5.9933 17 6 3.7248 11.1025 -6.0372 18 1 4.1766 11.4722 -5.1285 19 6 4.3847 11.2487 -7.2497 20 7 3.8338 10.7986 -8.3571 21 14 6.0544 12.0840 -7.3096 22 1 7.0161 11.3291 -6.4665 23 1 6.5426 12.1146 -8.7117 24 1 5.9317 13.4728 -6.7982 25 6 0.2853 10.1051 -4.9421 26 6 -0.1046 9.3284 -3.6597 27 1 -0.2685 10.0194 -2.8327 28 6 -1.3582 8.4862 -3.9049 29 7 2.2923 2.1732 -1.0841 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.5526 4.1860 -2.3823 36 1 3.8741 5.0944 -0.8857 37 1 2.6904 6.2214 -3.4314 38 1 3.0115 7.1294 -1.9345 39 1 2.6780 8.3544 -4.7154 40 1 2.9813 9.2901 -3.2249 41 1 2.0952 10.1578 -6.8094 42 1 4.2951 10.9004 -9.2043 43 1 -0.2522 11.0513 -5.0045 44 1 0.1133 9.5006 -5.8326 45 1 -1.5862 7.9054 -3.0111 46 1 -2.1974 9.1424 -4.1357 47 1 -1.1841 7.8108 -4.7425 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755691380.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:57 Heat of formation + Delta-G solvation = 9.406223 kcal Electronic energy + Delta-G solvation = -28805.932625 eV Core-core repulsion = 24607.149386 eV Total energy + Delta-G solvation = -4198.783239 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.89866 -40.13770 -38.43466 -37.10940 -36.66455 -34.25928 -34.16600 -32.18380 -31.83959 -31.44563 -28.99441 -28.45361 -26.82735 -25.43599 -25.38717 -23.94147 -23.50904 -21.83388 -21.48828 -20.36179 -19.00475 -18.48347 -17.89608 -17.39176 -17.04800 -16.75584 -16.48651 -15.99828 -15.69305 -15.15973 -14.88989 -14.58646 -14.32501 -14.03516 -13.74726 -13.42310 -13.37935 -13.18544 -13.02713 -12.75987 -12.47484 -12.37459 -12.11511 -12.09557 -11.92097 -11.79475 -11.74456 -11.62451 -11.29690 -11.29457 -11.07454 -10.84531 -10.73792 -10.40994 -10.32555 -10.19392 -10.12123 -9.82278 -9.43635 -9.06223 -8.41349 -7.18012 -5.92070 -3.23741 0.70171 1.81113 2.29995 2.70202 2.82948 3.23600 3.34300 3.39581 3.40778 3.64666 3.88451 4.39921 4.46237 4.55698 4.63101 4.74335 4.78145 4.83623 4.93979 5.00761 5.03313 5.03836 5.10409 5.20366 5.36806 5.42836 5.43126 5.51067 5.52258 5.60058 5.66429 5.78119 5.78799 5.82777 6.03099 6.06709 6.13158 6.32930 6.37774 6.43533 6.51884 6.66193 6.79493 7.55158 7.70290 7.83427 8.24847 8.30371 9.37125 9.90536 10.25214 11.29576 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014123 B = 0.002130 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.136886 B =13144.519075 C =14413.428354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.032 4.032 3 C 0.170 3.830 4 N -0.379 5.379 5 O 0.088 5.912 6 C 0.189 3.811 7 C 0.155 3.845 8 O -0.357 6.357 9 C 0.049 3.951 10 C 0.530 3.470 11 O -0.529 6.529 12 N -0.608 5.608 13 C 0.068 3.932 14 C 0.172 3.828 15 H 0.067 0.933 16 N -0.713 5.713 17 C -0.252 4.252 18 H 0.072 0.928 19 C -0.008 4.008 20 N -0.928 5.928 21 Si 0.909 3.091 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C -0.136 4.136 26 C 0.140 3.860 27 H 0.074 0.926 28 C -0.164 4.164 29 N -0.460 5.460 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.387 0.613 42 H 0.258 0.742 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.058 0.942 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.530 -14.782 14.558 21.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.071 4.071 3 C -0.103 4.103 4 N -0.086 5.086 5 O 0.028 5.972 6 C -0.033 4.033 7 C 0.076 3.924 8 O -0.274 6.274 9 C -0.030 4.030 10 C 0.317 3.683 11 O -0.405 6.405 12 N -0.344 5.344 13 C -0.057 4.057 14 C 0.060 3.940 15 H 0.085 0.915 16 N -0.353 5.353 17 C -0.383 4.383 18 H 0.090 0.910 19 C -0.204 4.204 20 N -0.575 5.575 21 Si 0.739 3.261 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.211 1.211 25 C -0.175 4.175 26 C 0.037 3.963 27 H 0.092 0.908 28 C -0.222 4.222 29 N -0.195 5.195 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.222 0.778 42 H 0.068 0.932 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.077 0.923 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.306 -15.581 15.402 22.328 hybrid contribution 1.314 0.604 -0.565 1.553 sum -2.991 -14.977 14.837 21.293 Atomic orbital electron populations 1.21752 0.93116 1.02883 1.02975 1.19956 0.96992 0.85404 1.04726 1.25951 1.00454 1.00549 0.83348 1.74645 1.17161 0.92842 1.23915 1.85307 1.60199 1.27118 1.24603 1.28176 0.96737 0.96253 0.82101 1.20602 0.88733 0.85525 0.97504 1.88018 1.30611 1.35062 1.73729 1.22301 0.96658 0.86912 0.97135 1.19618 0.89827 0.80302 0.78509 1.90659 1.31709 1.68658 1.49506 1.48540 1.11505 1.21884 1.52458 1.23415 0.86497 0.98771 0.97067 1.21162 0.89766 0.93545 0.89518 0.91545 1.42385 1.20335 1.69710 1.02893 1.19195 0.94628 1.30946 0.93506 0.90959 1.24786 0.98994 1.01212 0.95451 1.69650 1.38995 1.50941 0.97948 0.86257 0.83754 0.79385 0.76670 1.21129 1.21647 1.21127 1.23153 0.97549 1.00194 0.96614 1.21872 0.86035 0.91134 0.97257 0.90837 1.22176 0.96224 1.00165 1.03642 1.71900 1.16001 1.02156 1.29433 0.92281 0.91746 0.90932 0.88444 0.89023 0.87839 0.88751 0.89262 0.89430 0.90661 0.92093 0.77805 0.93219 0.90036 0.90406 0.89830 0.92256 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.89 37.16 0.37 -0.72 16 2 C -0.03 -0.25 6.56 -27.88 -0.18 -0.43 16 3 C 0.17 1.95 7.47 -156.37 -1.17 0.78 16 4 N -0.38 -4.75 12.16 30.90 0.38 -4.37 16 5 O 0.09 1.06 11.31 18.11 0.20 1.26 16 6 C 0.19 2.13 8.14 -13.06 -0.11 2.03 16 7 C 0.15 1.34 6.56 36.00 0.24 1.58 16 8 O -0.36 -4.49 9.86 -55.14 -0.54 -5.03 16 9 C 0.05 0.56 5.61 36.01 0.20 0.76 16 10 C 0.53 8.02 7.71 -10.99 -0.08 7.93 16 11 O -0.53 -9.72 14.15 -14.36 -0.20 -9.92 16 12 N -0.61 -8.87 3.24 -163.04 -0.53 -9.40 16 13 C 0.07 1.03 6.24 -3.06 -0.02 1.01 16 14 C 0.17 2.96 3.59 -66.10 -0.24 2.73 16 15 H 0.07 1.14 8.12 -51.93 -0.42 0.72 16 16 N -0.71 -15.91 5.18 -51.65 -0.27 -16.17 16 17 C -0.25 -6.32 9.98 -15.06 -0.15 -6.47 16 18 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 19 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 20 N -0.93 -26.23 13.06 55.49 0.72 -25.50 16 21 Si 0.91 20.86 29.55 -169.99 -5.02 15.84 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C -0.14 -2.01 6.11 -24.58 -0.15 -2.16 16 26 C 0.14 1.96 3.76 -66.42 -0.25 1.71 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 C -0.16 -2.28 8.71 37.16 0.32 -1.95 16 29 N -0.46 -5.73 11.55 -9.87 -0.11 -5.84 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.22 8.03 -51.93 -0.42 0.81 16 40 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 41 H 0.39 9.35 7.71 -40.82 -0.31 9.03 16 42 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.08 1.22 7.92 -51.93 -0.41 0.80 16 45 H 0.08 1.31 5.89 -51.93 -0.31 1.00 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 395.02 15.07 5.95 5.95 Total: -1.00 -32.68 395.02 -8.07 -40.75 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -7.33 Total: 5.94 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -1.32 Total: 6.51 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: 0.19 Total: -61.29 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.54 Total: -13.69 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.68 -8.07 -40.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755691380.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.157 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds