Wall clock time and date at job start Tue Mar 31 2020 20:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47465 * 2 1 4 4 N 1.29947 * 126.28546 * 89.97041 * 3 2 1 5 5 O 1.21306 * 110.24765 * 180.02562 * 4 3 2 6 6 C 1.33640 * 109.81214 * 0.02562 * 5 4 3 7 7 C 1.50698 * 126.55090 * 179.97438 * 6 5 4 8 8 O 1.42894 * 109.47245 * 270.02374 * 7 6 5 9 9 C 1.42897 * 114.00319 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47670 * 179.97438 * 9 8 7 11 11 O 1.21286 * 119.99454 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00510 * 180.02562 * 10 9 8 13 13 C 1.47026 * 125.64695 * 359.97438 * 12 10 9 14 14 C 1.54319 * 107.27305 * 178.97771 * 13 12 10 15 15 H 1.09004 * 110.71894 * 96.34703 * 14 13 12 16 16 N 1.46498 * 110.71865 * 219.44531 * 14 13 12 17 17 C 1.36943 * 119.99752 * 273.26644 * 16 14 13 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 14 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 14 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47213 * 60.00246 * 21 19 17 23 23 H 1.48502 * 109.47317 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47081 * 299.99875 * 21 19 17 25 25 C 1.55154 * 102.93928 * 337.80720 * 14 13 12 26 26 C 1.47415 * 125.65206 * 180.02562 * 12 10 9 27 27 H 1.09000 * 110.37086 * 85.24958 * 26 12 10 28 28 C 1.53007 * 110.36726 * 323.03755 * 26 12 10 29 29 N 1.31130 * 106.89691 * 0.22264 * 6 5 4 30 30 H 1.09006 * 109.46860 * 300.00507 * 1 2 3 31 31 H 1.08998 * 109.46841 * 59.99637 * 1 2 3 32 32 H 1.08992 * 109.47129 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47065 * 239.99899 * 2 1 3 34 34 H 1.09005 * 109.46957 * 119.99961 * 2 1 3 35 35 H 1.09008 * 109.46992 * 150.02330 * 7 6 5 36 36 H 1.08996 * 109.47216 * 30.02321 * 7 6 5 37 37 H 1.09005 * 109.46973 * 59.99813 * 9 8 7 38 38 H 1.09006 * 109.47548 * 300.00303 * 9 8 7 39 39 H 1.09003 * 109.88485 * 59.55446 * 13 12 10 40 40 H 1.09007 * 109.88016 * 298.39827 * 13 12 10 41 41 H 0.97001 * 120.00384 * 93.55000 * 16 14 13 42 42 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 43 43 H 1.09002 * 111.00391 * 153.57915 * 25 14 13 44 44 H 1.08996 * 111.00552 * 277.42291 * 25 14 13 45 45 H 1.09005 * 109.46394 * 61.45327 * 28 26 12 46 46 H 1.08995 * 109.47277 * 181.45624 * 28 26 12 47 47 H 1.08998 * 109.47136 * 301.45950 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2883 2.1460 1.0475 5 8 2.6767 3.2453 0.7123 6 6 2.7057 3.3283 -0.6212 7 6 3.1272 4.5232 -1.4370 8 8 1.9901 5.3495 -1.6942 9 6 2.2822 6.5169 -2.4648 10 6 1.0178 7.3095 -2.6751 11 8 -0.0302 6.9138 -2.2103 12 7 1.0516 8.4579 -3.3796 13 6 2.2480 9.0506 -3.9952 14 6 1.8018 10.3409 -4.7145 15 1 1.9686 11.2126 -4.0816 16 7 2.5009 10.4897 -5.9933 17 6 3.7248 11.1025 -6.0372 18 1 4.1766 11.4722 -5.1285 19 6 4.3847 11.2487 -7.2497 20 7 3.8338 10.7986 -8.3571 21 14 6.0544 12.0840 -7.3096 22 1 7.0161 11.3291 -6.4665 23 1 6.5426 12.1146 -8.7117 24 1 5.9317 13.4728 -6.7982 25 6 0.2853 10.1051 -4.9421 26 6 -0.1046 9.3284 -3.6597 27 1 -0.2685 10.0194 -2.8327 28 6 -1.3582 8.4862 -3.9049 29 7 2.2923 2.1732 -1.0841 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.5526 4.1860 -2.3823 36 1 3.8741 5.0944 -0.8857 37 1 2.6904 6.2214 -3.4314 38 1 3.0115 7.1294 -1.9345 39 1 2.6780 8.3544 -4.7154 40 1 2.9813 9.2901 -3.2249 41 1 2.0952 10.1578 -6.8094 42 1 4.2951 10.9004 -9.2043 43 1 -0.2522 11.0513 -5.0045 44 1 0.1133 9.5006 -5.8326 45 1 -1.5862 7.9054 -3.0111 46 1 -2.1974 9.1424 -4.1357 47 1 -1.1841 7.8108 -4.7425 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755691380.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:56 Heat of formation + Delta-G solvation = -13.360199 kcal Electronic energy + Delta-G solvation = -28806.919851 eV Core-core repulsion = 24607.149386 eV Total energy + Delta-G solvation = -4199.770465 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.76255 -41.30444 -39.39855 -38.31657 -37.48209 -35.91211 -34.96114 -33.34263 -33.06169 -32.67055 -30.12717 -29.73458 -27.72592 -26.59159 -26.17058 -25.72774 -24.30236 -23.05296 -22.24273 -21.73153 -20.14601 -19.36707 -19.16616 -18.73833 -18.12076 -17.75225 -17.42444 -17.00718 -16.81832 -16.39361 -15.94217 -15.58057 -15.40031 -15.27632 -15.06472 -14.76484 -14.36265 -14.22507 -14.10507 -13.88225 -13.49859 -13.35185 -13.18080 -13.15006 -12.98003 -12.86929 -12.74107 -12.70429 -12.54539 -12.37128 -12.34388 -12.13182 -12.07275 -12.04276 -11.67048 -11.51412 -11.18251 -10.96146 -10.95461 -10.55569 -9.62111 -9.02348 -7.90001 -5.19862 -0.15387 0.96307 1.48548 1.54718 1.56045 1.56561 1.61884 1.84137 2.46125 2.60702 2.86595 3.01043 3.41700 3.44851 3.74997 3.84457 3.90192 3.92259 4.05441 4.12340 4.17444 4.19583 4.20839 4.22481 4.29181 4.37287 4.37970 4.53007 4.56242 4.68659 4.76186 4.81412 4.82220 4.87375 4.91437 4.96713 5.14065 5.19028 5.19325 5.23580 5.37229 5.52368 5.60154 5.76249 6.30432 6.53297 6.97945 7.14837 7.38502 8.10754 8.33791 9.32638 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014123 B = 0.002130 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.136886 B =13144.519075 C =14413.428354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.033 4.033 3 C 0.165 3.835 4 N -0.401 5.401 5 O 0.078 5.922 6 C 0.188 3.812 7 C 0.152 3.848 8 O -0.390 6.390 9 C 0.054 3.946 10 C 0.522 3.478 11 O -0.567 6.567 12 N -0.607 5.607 13 C 0.082 3.918 14 C 0.164 3.836 15 H 0.073 0.927 16 N -0.725 5.725 17 C -0.239 4.239 18 H 0.085 0.915 19 C -0.072 4.072 20 N -0.968 5.968 21 Si 0.968 3.032 22 H -0.274 1.274 23 H -0.304 1.304 24 H -0.280 1.280 25 C -0.126 4.126 26 C 0.139 3.861 27 H 0.088 0.912 28 C -0.156 4.156 29 N -0.485 5.485 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.107 0.893 38 H 0.120 0.880 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.375 0.625 42 H 0.249 0.751 43 H 0.095 0.905 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.580 -14.801 15.857 21.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.072 4.072 3 C -0.108 4.108 4 N -0.109 5.109 5 O 0.021 5.979 6 C -0.033 4.033 7 C 0.075 3.925 8 O -0.308 6.308 9 C -0.025 4.025 10 C 0.312 3.688 11 O -0.447 6.447 12 N -0.342 5.342 13 C -0.043 4.043 14 C 0.054 3.946 15 H 0.091 0.909 16 N -0.364 5.364 17 C -0.370 4.370 18 H 0.102 0.898 19 C -0.265 4.265 20 N -0.618 5.618 21 Si 0.798 3.202 22 H -0.200 1.200 23 H -0.230 1.230 24 H -0.206 1.206 25 C -0.164 4.164 26 C 0.036 3.964 27 H 0.105 0.895 28 C -0.214 4.214 29 N -0.221 5.221 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.117 0.883 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.142 0.858 36 H 0.150 0.850 37 H 0.124 0.876 38 H 0.138 0.862 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.207 0.793 42 H 0.058 0.942 43 H 0.114 0.886 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.099 0.901 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.350 -15.582 16.760 23.128 hybrid contribution 0.920 0.591 -0.900 1.416 sum -2.430 -14.991 15.860 21.959 Atomic orbital electron populations 1.21731 0.92822 1.04183 1.01567 1.20189 0.97116 0.83674 1.06223 1.26628 0.99555 1.01693 0.82877 1.74626 1.18363 0.93279 1.24663 1.85271 1.60477 1.27108 1.25065 1.28777 0.95691 0.96792 0.82001 1.21014 0.88111 0.84751 0.98674 1.87953 1.32902 1.35809 1.74112 1.22351 0.94897 0.86779 0.98456 1.20339 0.90742 0.80160 0.77606 1.90648 1.33503 1.69466 1.51068 1.48572 1.11396 1.22040 1.52202 1.23085 0.86798 0.97180 0.97262 1.21374 0.90813 0.94700 0.87729 0.90916 1.42531 1.19989 1.69635 1.04281 1.19614 0.95083 1.28818 0.93532 0.89759 1.25518 1.02365 1.03103 0.95498 1.69806 1.40387 1.53480 0.98174 0.85289 0.80379 0.78663 0.75859 1.20027 1.23036 1.20627 1.23054 0.96045 1.00810 0.96517 1.21944 0.86015 0.91254 0.97200 0.89457 1.22075 0.97028 1.00086 1.02183 1.71921 1.16985 1.03006 1.30151 0.93370 0.93385 0.88282 0.87077 0.87337 0.85801 0.85016 0.87576 0.86191 0.91705 0.89934 0.79259 0.94177 0.88638 0.91570 0.91617 0.90131 0.93968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.89 71.98 0.71 -1.28 16 2 C -0.03 -0.48 6.56 29.85 0.20 -0.29 16 3 C 0.17 3.73 7.47 138.46 1.03 4.77 16 4 N -0.40 -9.97 12.16 -60.31 -0.73 -10.70 16 5 O 0.08 1.86 11.31 74.86 0.85 2.70 16 6 C 0.19 4.10 8.14 88.38 0.72 4.82 16 7 C 0.15 2.29 6.56 71.24 0.47 2.76 16 8 O -0.39 -9.14 9.86 -129.94 -1.28 -10.43 16 9 C 0.05 1.08 5.61 71.24 0.40 1.48 16 10 C 0.52 15.04 7.71 87.66 0.68 15.72 16 11 O -0.57 -20.70 14.15 15.99 0.23 -20.47 16 12 N -0.61 -16.59 3.24 -788.14 -2.56 -19.15 16 13 C 0.08 2.28 6.24 86.73 0.54 2.82 16 14 C 0.16 5.33 3.59 46.18 0.17 5.49 16 15 H 0.07 2.31 8.12 -2.39 -0.02 2.29 16 16 N -0.73 -31.69 5.18 -317.33 -1.64 -33.33 16 17 C -0.24 -11.66 9.98 84.03 0.84 -10.82 16 18 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 19 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 20 N -0.97 -55.39 13.06 21.65 0.28 -55.10 16 21 Si 0.97 42.52 29.55 68.60 2.03 44.54 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 23 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 25 C -0.13 -3.51 6.11 31.99 0.20 -3.31 16 26 C 0.14 3.65 3.76 45.47 0.17 3.82 16 27 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 28 C -0.16 -4.19 8.71 71.98 0.63 -3.56 16 29 N -0.48 -11.87 11.55 -303.20 -3.50 -15.37 16 30 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.12 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.06 1.98 8.03 -2.39 -0.02 1.96 16 40 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.37 18.16 7.71 -92.71 -0.72 17.44 16 42 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 43 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.07 2.03 7.92 -2.39 -0.02 2.01 16 45 H 0.06 2.05 5.89 -2.38 -0.01 2.03 16 46 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -71.83 395.02 1.15 -70.69 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.27 Total: 27.55 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: 7.21 Total: 19.08 kcal Atomic # 7 Polarization: -125.51 SS G_CDS: -8.15 Total: -133.66 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.21 Total: -28.20 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -71.83 1.15 -70.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755691380.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.325 kcal (2) G-P(sol) polarization free energy of solvation -71.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds