Wall clock time and date at job start Tue Mar 31 2020 20:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50700 * 109.46961 * 2 1 4 4 N 1.29949 * 126.28586 * 269.68827 * 3 2 1 5 5 O 1.21303 * 110.24914 * 180.26448 * 4 3 2 6 6 C 1.33639 * 109.81253 * 0.02562 * 5 4 3 7 7 C 1.50697 * 126.55152 * 180.02562 * 6 5 4 8 8 O 1.42900 * 109.47234 * 269.97294 * 7 6 5 9 9 C 1.42899 * 114.00321 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.47395 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99861 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99918 * 180.02562 * 10 9 8 13 13 C 1.47423 * 125.64949 * 0.02562 * 12 10 9 14 14 C 1.54909 * 104.83278 * 204.09183 * 13 12 10 15 15 H 1.09002 * 111.00039 * 81.06051 * 14 13 12 16 16 N 1.46498 * 111.00790 * 204.87945 * 14 13 12 17 17 C 1.36939 * 119.99694 * 273.54966 * 16 14 13 18 18 H 1.08005 * 120.00229 * 359.97438 * 17 16 14 19 19 C 1.38809 * 119.99797 * 179.97438 * 17 16 14 20 20 N 1.31613 * 119.99981 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00110 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47053 * 89.99898 * 21 19 17 23 23 H 1.48497 * 109.47206 * 210.00201 * 21 19 17 24 24 H 1.48506 * 109.47006 * 330.00196 * 21 19 17 25 25 C 1.55159 * 101.58258 * 322.99441 * 14 13 12 26 26 C 1.47019 * 125.64515 * 179.71708 * 12 10 9 27 27 H 1.09006 * 109.88696 * 298.39484 * 26 12 10 28 28 C 1.52998 * 109.88336 * 59.55816 * 26 12 10 29 29 N 1.31128 * 106.89861 * 359.97438 * 6 5 4 30 30 H 1.08995 * 109.46902 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46870 * 300.00153 * 1 2 3 32 32 H 1.08999 * 109.46643 * 59.99827 * 1 2 3 33 33 H 1.09001 * 109.46981 * 240.00381 * 2 1 3 34 34 H 1.08992 * 109.46931 * 119.99964 * 2 1 3 35 35 H 1.09004 * 109.47526 * 29.97499 * 7 6 5 36 36 H 1.08996 * 109.47163 * 149.97527 * 7 6 5 37 37 H 1.08996 * 109.47762 * 300.00880 * 9 8 7 38 38 H 1.09008 * 109.46322 * 60.00146 * 9 8 7 39 39 H 1.08998 * 110.36715 * 322.93279 * 13 12 10 40 40 H 1.09002 * 110.36667 * 85.14682 * 13 12 10 41 41 H 0.96998 * 119.99969 * 93.54036 * 16 14 13 42 42 H 0.97009 * 120.00018 * 180.02562 * 20 19 17 43 43 H 1.08994 * 110.72187 * 153.86326 * 25 14 13 44 44 H 1.09000 * 110.71474 * 276.95905 * 25 14 13 45 45 H 1.08999 * 109.47250 * 58.54793 * 28 26 12 46 46 H 1.09002 * 109.47103 * 178.54128 * 28 26 12 47 47 H 1.09002 * 109.47244 * 298.54674 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2941 2.1440 -1.0475 5 8 2.6859 3.2420 -0.7124 6 6 2.7126 3.3259 0.6211 7 6 3.1370 4.5198 1.4369 8 8 4.5398 4.4438 1.6984 9 6 5.0473 5.5346 2.4694 10 6 6.5279 5.3528 2.6831 11 8 7.0930 4.3846 2.2203 12 7 7.2242 6.2662 3.3886 13 6 6.6661 7.4837 4.0046 14 6 7.8683 8.4529 4.1272 15 1 8.0620 8.9568 3.1803 16 7 7.6517 9.4251 5.2015 17 6 6.9701 10.5854 4.9477 18 1 6.5926 10.7840 3.9555 19 6 6.7644 11.5063 5.9658 20 7 6.1098 12.6217 5.7218 21 14 7.4167 11.1625 7.6821 22 1 8.7932 11.7055 7.8065 23 1 6.5357 11.8119 8.6858 24 1 7.4396 9.6965 7.9185 25 6 9.0204 7.4766 4.4834 26 6 8.6647 6.2099 3.6766 27 1 8.8912 5.3190 4.2625 28 6 9.4567 6.1905 2.3677 29 7 2.2981 2.1712 1.0841 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.9194 5.4336 0.8841 36 1 2.5915 4.5275 2.3806 37 1 4.8694 6.4693 1.9377 38 1 4.5414 5.5637 3.4345 39 1 5.8958 7.9138 3.3644 40 1 6.2571 7.2574 4.9893 41 1 7.9909 9.2468 6.0926 42 1 5.9664 13.2654 6.4332 43 1 9.9812 7.8817 4.1661 44 1 9.0278 7.2625 5.5522 45 1 9.2193 7.0812 1.7861 46 1 10.5239 6.1749 2.5890 47 1 9.1912 5.3015 1.7955 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755691381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:01 Heat of formation + Delta-G solvation = 11.252372 kcal Electronic energy + Delta-G solvation = -28743.367760 eV Core-core repulsion = 24544.664576 eV Total energy + Delta-G solvation = -4198.703184 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.91283 -40.20796 -38.51722 -37.23399 -36.68488 -34.41143 -34.20265 -32.23611 -31.91316 -31.55816 -29.10057 -28.81962 -26.89489 -25.63181 -25.46901 -23.76338 -23.52313 -21.89615 -21.51432 -20.39221 -19.08060 -18.54695 -17.93994 -17.77183 -17.24087 -16.77855 -16.52583 -15.97053 -15.54696 -15.30582 -14.93134 -14.61954 -14.40648 -14.14205 -13.75077 -13.49747 -13.41050 -13.16775 -13.11948 -12.84887 -12.67115 -12.45140 -12.38283 -12.18063 -12.01961 -11.92813 -11.74601 -11.69008 -11.60528 -11.31912 -11.16128 -10.92929 -10.72096 -10.45105 -10.34627 -10.23594 -10.12838 -9.75494 -9.69319 -9.13115 -8.52851 -7.48857 -5.92701 -3.31449 0.68810 1.79591 2.27413 2.63846 2.76905 3.20754 3.26522 3.29681 3.36241 3.62705 3.83674 4.36607 4.44825 4.49969 4.59415 4.69864 4.74393 4.79646 4.87467 4.92373 4.96282 4.97770 4.99288 5.10474 5.23011 5.33135 5.39765 5.43490 5.47343 5.48115 5.62699 5.67850 5.70240 5.71576 5.80374 5.91683 6.02738 6.10930 6.24689 6.32662 6.40110 6.56702 6.65661 7.60206 7.80717 7.82087 8.21660 8.25803 9.02072 9.74307 9.91962 11.24645 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016320 B = 0.002049 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.287450 B =13663.921792 C =14706.132081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.033 4.033 3 C 0.170 3.830 4 N -0.379 5.379 5 O 0.089 5.911 6 C 0.189 3.811 7 C 0.155 3.845 8 O -0.357 6.357 9 C 0.049 3.951 10 C 0.531 3.469 11 O -0.528 6.528 12 N -0.609 5.609 13 C 0.069 3.931 14 C 0.179 3.821 15 H 0.074 0.926 16 N -0.736 5.736 17 C -0.256 4.256 18 H 0.093 0.907 19 C 0.011 3.989 20 N -0.927 5.927 21 Si 0.884 3.116 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.276 1.276 25 C -0.140 4.140 26 C 0.142 3.858 27 H 0.072 0.928 28 C -0.163 4.163 29 N -0.460 5.460 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.365 0.635 42 H 0.262 0.738 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.477 -19.656 -8.348 22.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.072 4.072 3 C -0.103 4.103 4 N -0.085 5.085 5 O 0.029 5.971 6 C -0.033 4.033 7 C 0.076 3.924 8 O -0.275 6.275 9 C -0.030 4.030 10 C 0.318 3.682 11 O -0.404 6.404 12 N -0.345 5.345 13 C -0.056 4.056 14 C 0.068 3.932 15 H 0.092 0.908 16 N -0.378 5.378 17 C -0.385 4.385 18 H 0.110 0.890 19 C -0.186 4.186 20 N -0.574 5.574 21 Si 0.714 3.286 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.202 1.202 25 C -0.179 4.179 26 C 0.039 3.961 27 H 0.090 0.910 28 C -0.221 4.221 29 N -0.196 5.196 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.198 0.802 42 H 0.072 0.928 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.431 -20.735 -9.311 23.622 hybrid contribution 0.223 0.341 1.500 1.554 sum -6.208 -20.394 -7.811 22.704 Atomic orbital electron populations 1.21741 0.93172 1.02912 1.02709 1.19961 0.96869 0.85476 1.04895 1.25935 1.00365 1.00656 0.83352 1.74651 1.17142 0.92778 1.23914 1.85312 1.60047 1.27199 1.24581 1.28160 0.96603 0.96369 0.82134 1.20606 0.84190 0.90063 0.97499 1.88018 1.20073 1.45662 1.73702 1.22291 0.93166 0.90375 0.97159 1.19634 0.87905 0.82216 0.78470 1.90708 1.70836 1.29715 1.49186 1.48519 1.09470 1.23773 1.52756 1.23511 0.99983 0.84252 0.97897 1.21233 0.90264 0.88220 0.93522 0.90774 1.42675 1.67716 1.19838 1.07585 1.19046 1.28186 0.93537 0.97752 0.88962 1.24687 0.99880 0.96307 0.97724 1.69694 1.45156 1.09872 1.32662 0.86577 0.78793 0.77566 0.85688 1.20922 1.21627 1.20239 1.23031 1.00367 0.94455 1.00053 1.21485 0.79787 0.98540 0.96265 0.91012 1.22153 0.99484 1.03022 0.97426 1.71892 1.16867 1.01374 1.29451 0.90946 0.91902 0.92311 0.88965 0.88415 0.88617 0.87864 0.89143 0.89323 0.90733 0.90994 0.80175 0.92832 0.89716 0.90715 0.92222 0.91849 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.90 37.16 0.37 -0.52 16 2 C -0.03 -0.25 6.56 -27.88 -0.18 -0.43 16 3 C 0.17 1.92 7.47 -156.37 -1.17 0.75 16 4 N -0.38 -4.70 12.16 30.90 0.38 -4.33 16 5 O 0.09 1.06 11.31 18.11 0.20 1.27 16 6 C 0.19 2.09 8.14 -13.06 -0.11 1.99 16 7 C 0.15 1.30 6.56 36.00 0.24 1.54 16 8 O -0.36 -4.37 9.86 -55.14 -0.54 -4.92 16 9 C 0.05 0.54 5.42 36.00 0.20 0.73 16 10 C 0.53 7.75 7.71 -10.99 -0.08 7.66 16 11 O -0.53 -9.62 15.39 -14.35 -0.22 -9.84 16 12 N -0.61 -8.45 3.08 -163.01 -0.50 -8.96 16 13 C 0.07 0.99 6.38 -2.53 -0.02 0.98 16 14 C 0.18 2.92 3.69 -65.78 -0.24 2.68 16 15 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 16 N -0.74 -15.20 5.08 -51.35 -0.26 -15.46 16 17 C -0.26 -6.47 10.47 -15.06 -0.16 -6.63 16 18 H 0.09 2.50 8.06 -52.48 -0.42 2.08 16 19 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 20 N -0.93 -27.22 13.97 55.49 0.78 -26.45 16 21 Si 0.88 20.42 27.73 -169.99 -4.71 15.70 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -5.93 6.52 56.52 0.37 -5.56 16 25 C -0.14 -1.88 6.11 -24.89 -0.15 -2.03 16 26 C 0.14 1.89 3.51 -66.95 -0.23 1.65 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 C -0.16 -2.05 9.05 37.16 0.34 -1.72 16 29 N -0.46 -5.61 11.55 -9.87 -0.11 -5.72 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.78 7.85 -51.93 -0.41 0.37 16 38 H 0.09 0.78 8.14 -51.92 -0.42 0.35 16 39 H 0.07 1.01 7.48 -51.93 -0.39 0.62 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.36 7.45 5.57 -40.82 -0.23 7.22 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.08 1.04 7.83 -51.93 -0.41 0.64 16 44 H 0.07 0.98 7.99 -51.93 -0.42 0.56 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.07 0.98 6.74 -51.93 -0.35 0.63 16 LS Contribution 392.99 15.07 5.92 5.92 Total: -1.00 -33.83 392.99 -7.66 -41.50 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -7.28 Total: 4.44 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -1.31 Total: 6.84 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: 0.27 Total: -60.92 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.56 Total: -13.49 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.71 Total: 15.70 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.83 -7.66 -41.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755691381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.750 kcal (2) G-P(sol) polarization free energy of solvation -33.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds