Wall clock time and date at job start Tue Mar 31 2020 20:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50700 * 109.46961 * 2 1 4 4 N 1.29949 * 126.28586 * 269.68827 * 3 2 1 5 5 O 1.21303 * 110.24914 * 180.26448 * 4 3 2 6 6 C 1.33639 * 109.81253 * 0.02562 * 5 4 3 7 7 C 1.50697 * 126.55152 * 180.02562 * 6 5 4 8 8 O 1.42900 * 109.47234 * 269.97294 * 7 6 5 9 9 C 1.42899 * 114.00321 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.47395 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99861 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99918 * 180.02562 * 10 9 8 13 13 C 1.47423 * 125.64949 * 0.02562 * 12 10 9 14 14 C 1.54909 * 104.83278 * 204.09183 * 13 12 10 15 15 H 1.09002 * 111.00039 * 81.06051 * 14 13 12 16 16 N 1.46498 * 111.00790 * 204.87945 * 14 13 12 17 17 C 1.36939 * 119.99694 * 273.54966 * 16 14 13 18 18 H 1.08005 * 120.00229 * 359.97438 * 17 16 14 19 19 C 1.38809 * 119.99797 * 179.97438 * 17 16 14 20 20 N 1.31613 * 119.99981 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00110 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47053 * 89.99898 * 21 19 17 23 23 H 1.48497 * 109.47206 * 210.00201 * 21 19 17 24 24 H 1.48506 * 109.47006 * 330.00196 * 21 19 17 25 25 C 1.55159 * 101.58258 * 322.99441 * 14 13 12 26 26 C 1.47019 * 125.64515 * 179.71708 * 12 10 9 27 27 H 1.09006 * 109.88696 * 298.39484 * 26 12 10 28 28 C 1.52998 * 109.88336 * 59.55816 * 26 12 10 29 29 N 1.31128 * 106.89861 * 359.97438 * 6 5 4 30 30 H 1.08995 * 109.46902 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46870 * 300.00153 * 1 2 3 32 32 H 1.08999 * 109.46643 * 59.99827 * 1 2 3 33 33 H 1.09001 * 109.46981 * 240.00381 * 2 1 3 34 34 H 1.08992 * 109.46931 * 119.99964 * 2 1 3 35 35 H 1.09004 * 109.47526 * 29.97499 * 7 6 5 36 36 H 1.08996 * 109.47163 * 149.97527 * 7 6 5 37 37 H 1.08996 * 109.47762 * 300.00880 * 9 8 7 38 38 H 1.09008 * 109.46322 * 60.00146 * 9 8 7 39 39 H 1.08998 * 110.36715 * 322.93279 * 13 12 10 40 40 H 1.09002 * 110.36667 * 85.14682 * 13 12 10 41 41 H 0.96998 * 119.99969 * 93.54036 * 16 14 13 42 42 H 0.97009 * 120.00018 * 180.02562 * 20 19 17 43 43 H 1.08994 * 110.72187 * 153.86326 * 25 14 13 44 44 H 1.09000 * 110.71474 * 276.95905 * 25 14 13 45 45 H 1.08999 * 109.47250 * 58.54793 * 28 26 12 46 46 H 1.09002 * 109.47103 * 178.54128 * 28 26 12 47 47 H 1.09002 * 109.47244 * 298.54674 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2941 2.1440 -1.0475 5 8 2.6859 3.2420 -0.7124 6 6 2.7126 3.3259 0.6211 7 6 3.1370 4.5198 1.4369 8 8 4.5398 4.4438 1.6984 9 6 5.0473 5.5346 2.4694 10 6 6.5279 5.3528 2.6831 11 8 7.0930 4.3846 2.2203 12 7 7.2242 6.2662 3.3886 13 6 6.6661 7.4837 4.0046 14 6 7.8683 8.4529 4.1272 15 1 8.0620 8.9568 3.1803 16 7 7.6517 9.4251 5.2015 17 6 6.9701 10.5854 4.9477 18 1 6.5926 10.7840 3.9555 19 6 6.7644 11.5063 5.9658 20 7 6.1098 12.6217 5.7218 21 14 7.4167 11.1625 7.6821 22 1 8.7932 11.7055 7.8065 23 1 6.5357 11.8119 8.6858 24 1 7.4396 9.6965 7.9185 25 6 9.0204 7.4766 4.4834 26 6 8.6647 6.2099 3.6766 27 1 8.8912 5.3190 4.2625 28 6 9.4567 6.1905 2.3677 29 7 2.2981 2.1712 1.0841 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.9194 5.4336 0.8841 36 1 2.5915 4.5275 2.3806 37 1 4.8694 6.4693 1.9377 38 1 4.5414 5.5637 3.4345 39 1 5.8958 7.9138 3.3644 40 1 6.2571 7.2574 4.9893 41 1 7.9909 9.2468 6.0926 42 1 5.9664 13.2654 6.4332 43 1 9.9812 7.8817 4.1661 44 1 9.0278 7.2625 5.5522 45 1 9.2193 7.0812 1.7861 46 1 10.5239 6.1749 2.5890 47 1 9.1912 5.3015 1.7955 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755691381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:01 Heat of formation + Delta-G solvation = -12.928228 kcal Electronic energy + Delta-G solvation = -28744.416310 eV Core-core repulsion = 24544.664576 eV Total energy + Delta-G solvation = -4199.751734 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.76579 -41.32734 -39.45909 -38.38264 -37.48343 -36.04889 -34.95845 -33.52763 -33.11636 -32.67407 -30.40655 -29.81298 -27.75105 -26.74157 -26.15630 -25.47004 -24.29529 -23.13846 -22.24742 -21.71517 -20.22247 -19.61964 -19.39789 -18.76200 -18.24309 -17.67923 -17.39670 -17.03779 -16.75090 -16.18235 -16.10309 -15.68616 -15.44526 -15.24949 -15.00558 -14.67050 -14.52859 -14.26629 -14.12016 -13.95406 -13.88703 -13.40270 -13.30794 -13.18278 -13.10407 -12.98807 -12.82586 -12.71766 -12.51440 -12.38167 -12.30415 -12.03671 -12.01881 -11.90767 -11.76525 -11.45487 -11.20108 -11.03046 -10.96095 -10.77240 -9.71829 -9.30025 -7.97037 -5.32308 -0.15527 0.96436 1.45047 1.47413 1.47522 1.53651 1.54868 1.81668 2.44773 2.53805 2.85620 2.98025 3.33216 3.36906 3.68703 3.76832 3.82709 3.89683 4.04607 4.08548 4.12428 4.18166 4.19918 4.21289 4.29363 4.38398 4.38785 4.44723 4.49044 4.68380 4.70789 4.81189 4.82244 4.89528 4.92813 4.98013 5.03198 5.13876 5.21248 5.26147 5.31694 5.45579 5.75363 5.83393 6.26107 6.48556 6.97650 7.09862 7.13086 7.86098 8.04532 9.23463 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016320 B = 0.002049 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.287450 B =13663.921792 C =14706.132081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.036 4.036 3 C 0.166 3.834 4 N -0.401 5.401 5 O 0.077 5.923 6 C 0.188 3.812 7 C 0.152 3.848 8 O -0.390 6.390 9 C 0.053 3.947 10 C 0.524 3.476 11 O -0.570 6.570 12 N -0.606 5.606 13 C 0.080 3.920 14 C 0.169 3.831 15 H 0.065 0.935 16 N -0.738 5.738 17 C -0.229 4.229 18 H 0.065 0.935 19 C -0.059 4.059 20 N -0.981 5.981 21 Si 0.948 3.052 22 H -0.283 1.283 23 H -0.303 1.303 24 H -0.246 1.246 25 C -0.127 4.127 26 C 0.139 3.861 27 H 0.075 0.925 28 C -0.156 4.156 29 N -0.483 5.483 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.369 0.631 42 H 0.256 0.744 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.055 0.945 46 H 0.084 0.916 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.336 -21.055 -7.392 23.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.075 4.075 3 C -0.107 4.107 4 N -0.110 5.110 5 O 0.020 5.980 6 C -0.033 4.033 7 C 0.075 3.925 8 O -0.308 6.308 9 C -0.026 4.026 10 C 0.313 3.687 11 O -0.450 6.450 12 N -0.341 5.341 13 C -0.045 4.045 14 C 0.059 3.941 15 H 0.083 0.917 16 N -0.381 5.381 17 C -0.360 4.360 18 H 0.083 0.917 19 C -0.251 4.251 20 N -0.631 5.631 21 Si 0.776 3.224 22 H -0.209 1.209 23 H -0.230 1.230 24 H -0.170 1.170 25 C -0.166 4.166 26 C 0.036 3.964 27 H 0.093 0.907 28 C -0.214 4.214 29 N -0.219 5.219 30 H 0.114 0.886 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.203 0.797 42 H 0.065 0.935 43 H 0.116 0.884 44 H 0.102 0.898 45 H 0.074 0.926 46 H 0.103 0.897 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.266 -22.174 -8.368 24.515 hybrid contribution 0.202 0.715 1.088 1.318 sum -6.064 -21.459 -7.280 23.458 Atomic orbital electron populations 1.21710 0.91958 1.04227 1.01993 1.20197 0.97824 0.83603 1.05831 1.26621 0.99377 1.01792 0.82896 1.74635 1.18441 0.93235 1.24727 1.85276 1.60386 1.27240 1.25140 1.28781 0.95618 0.96885 0.81992 1.21015 0.82621 0.90156 0.98746 1.87954 1.22131 1.46532 1.74180 1.22368 0.90545 0.90931 0.98750 1.20344 0.89469 0.81403 0.77477 1.90690 1.72051 1.31393 1.50842 1.48540 1.09756 1.23427 1.52420 1.23250 0.99021 0.83822 0.98400 1.21391 0.92517 0.88210 0.91977 0.91678 1.42604 1.67305 1.19311 1.08850 1.19010 1.26201 0.94485 0.96256 0.91690 1.25437 1.01298 0.96415 1.01949 1.69870 1.48067 1.11442 1.33710 0.85515 0.77477 0.78950 0.80426 1.20948 1.22988 1.17024 1.22959 0.99703 0.93251 1.00648 1.21572 0.79733 0.98574 0.96558 0.90710 1.22088 1.00750 1.01770 0.96787 1.71913 1.17865 1.02064 1.30063 0.88601 0.92590 0.92990 0.87903 0.87540 0.85319 0.85475 0.86661 0.86789 0.89834 0.90678 0.79683 0.93476 0.88378 0.89781 0.92565 0.89737 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.90 71.98 0.71 -0.83 16 2 C -0.04 -0.51 6.56 29.85 0.20 -0.31 16 3 C 0.17 3.70 7.47 138.46 1.03 4.73 16 4 N -0.40 -10.01 12.16 -60.31 -0.73 -10.74 16 5 O 0.08 1.84 11.31 74.87 0.85 2.68 16 6 C 0.19 4.04 8.14 88.38 0.72 4.76 16 7 C 0.15 2.24 6.56 71.23 0.47 2.70 16 8 O -0.39 -8.91 9.86 -129.94 -1.28 -10.19 16 9 C 0.05 1.01 5.42 71.23 0.39 1.40 16 10 C 0.52 14.51 7.71 87.65 0.68 15.18 16 11 O -0.57 -20.56 15.39 16.00 0.25 -20.31 16 12 N -0.61 -15.57 3.08 -788.04 -2.43 -18.00 16 13 C 0.08 2.10 6.38 86.86 0.55 2.65 16 14 C 0.17 5.13 3.69 46.38 0.17 5.30 16 15 H 0.07 2.12 8.13 -2.39 -0.02 2.10 16 16 N -0.74 -28.84 5.08 -316.37 -1.61 -30.45 16 17 C -0.23 -11.42 10.47 84.03 0.88 -10.55 16 18 H 0.07 3.56 8.06 -2.91 -0.02 3.53 16 19 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 20 N -0.98 -58.65 13.97 21.65 0.30 -58.34 16 21 Si 0.95 41.43 27.73 68.60 1.90 43.34 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 23 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 24 H -0.25 -9.37 6.52 99.48 0.65 -8.73 16 25 C -0.13 -3.03 6.11 31.79 0.19 -2.83 16 26 C 0.14 3.38 3.51 45.35 0.16 3.54 16 27 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 28 C -0.16 -3.69 9.05 71.98 0.65 -3.04 16 29 N -0.48 -11.53 11.55 -303.20 -3.50 -15.03 16 30 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.11 1.30 8.14 -2.39 -0.02 1.29 16 35 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.12 1.63 7.85 -2.39 -0.02 1.61 16 38 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.08 2.05 7.48 -2.39 -0.02 2.03 16 40 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.37 13.88 5.57 -92.71 -0.52 13.36 16 42 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16 43 H 0.10 2.10 7.83 -2.39 -0.02 2.08 16 44 H 0.08 1.90 7.99 -2.39 -0.02 1.88 16 45 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.05 1.35 6.74 -2.39 -0.02 1.34 16 Total: -1.00 -75.11 392.99 1.42 -73.69 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.41 Total: 23.36 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 7.27 Total: 20.00 kcal Atomic # 7 Polarization: -124.60 SS G_CDS: -7.97 Total: -132.57 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.19 Total: -27.82 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 1.90 Total: 43.34 kcal Total: -75.11 1.42 -73.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755691381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.758 kcal (2) G-P(sol) polarization free energy of solvation -75.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds