Wall clock time and date at job start Tue Mar 31 2020 22:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42907 * 114.00146 * 2 1 4 4 C 1.52996 * 109.46983 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.55417 * 54.86998 * 4 3 2 6 6 C 1.53293 * 109.51020 * 174.99919 * 4 3 2 7 7 N 1.47153 * 108.38369 * 172.22663 * 6 4 3 8 8 C 1.34779 * 120.98048 * 129.44385 * 7 6 4 9 9 O 1.21595 * 119.99578 * 185.21086 * 8 7 6 10 10 N 1.34771 * 120.00443 * 5.21123 * 8 7 6 11 11 C 1.40188 * 120.00108 * 174.88213 * 10 8 7 12 12 C 1.40404 * 125.97643 * 359.97438 * 11 10 8 13 13 C 1.35243 * 107.87224 * 180.22621 * 12 11 10 14 14 N 1.34968 * 107.85669 * 359.61092 * 13 12 11 15 15 C 1.46500 * 125.97838 * 180.17386 * 14 13 12 16 16 C 1.50698 * 109.47315 * 125.28165 * 15 14 13 17 17 H 1.08007 * 119.99800 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00090 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99816 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00115 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46962 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46857 * 119.99806 * 20 18 16 23 23 H 1.48499 * 109.47138 * 239.99913 * 20 18 16 24 24 N 1.31210 * 125.97319 * 179.97438 * 11 10 8 25 25 C 1.47148 * 118.03456 * 309.71045 * 7 6 4 26 26 C 1.52884 * 108.60651 * 50.23122 * 25 7 6 27 27 H 1.09003 * 109.58225 * 187.92295 * 26 25 7 28 28 C 1.53000 * 109.40726 * 67.84116 * 26 25 7 29 29 O 1.42957 * 109.51260 * 294.74310 * 4 3 2 30 30 H 1.08990 * 109.47505 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46924 * 300.00882 * 1 2 3 32 32 H 1.09001 * 109.46798 * 59.99929 * 1 2 3 33 33 H 1.09001 * 109.46765 * 59.99289 * 3 2 1 34 34 H 1.08999 * 109.46677 * 299.99587 * 3 2 1 35 35 H 1.09005 * 109.68491 * 52.49903 * 6 4 3 36 36 H 1.09004 * 109.71360 * 291.96226 * 6 4 3 37 37 H 0.97002 * 119.99851 * 354.87380 * 10 8 7 38 38 H 1.08001 * 126.05692 * 359.95964 * 12 11 10 39 39 H 1.07991 * 126.07011 * 179.75727 * 13 12 11 40 40 H 1.08994 * 109.47056 * 245.28293 * 15 14 13 41 41 H 1.09003 * 109.46685 * 5.27778 * 15 14 13 42 42 H 0.97002 * 119.99938 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.68486 * 170.01080 * 25 7 6 44 44 H 1.08997 * 109.68488 * 290.56299 * 25 7 6 45 45 H 1.08998 * 109.47176 * 300.22158 * 28 26 25 46 46 H 1.08996 * 109.47434 * 60.22544 * 28 26 25 47 47 H 1.09005 * 109.46661 * 180.23009 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8528 0.5665 -0.8391 6 6 4.1596 2.5791 -0.1253 7 7 5.6135 2.4558 0.0656 8 6 6.4774 2.9958 -0.8168 9 8 7.6717 2.8031 -0.6940 10 7 6.0176 3.7493 -1.8352 11 6 6.9196 4.3987 -2.6895 12 6 8.3200 4.3517 -2.6002 13 6 8.8253 5.1100 -3.5995 14 7 7.7886 5.6127 -4.3025 15 6 7.8863 6.4865 -5.4743 16 6 7.1194 5.8781 -6.6200 17 1 6.6105 4.9345 -6.4886 18 6 7.0684 6.5254 -7.8363 19 7 7.6894 7.6735 -7.9967 20 14 6.1184 5.7708 -9.2568 21 1 5.5159 4.4851 -8.8218 22 1 5.0436 6.7023 -9.6836 23 1 7.0410 5.5249 -10.3941 24 7 6.6027 5.1569 -3.7124 25 6 6.0962 1.7203 1.2452 26 6 5.3777 0.3723 1.3072 27 1 5.6165 -0.1261 2.2468 28 6 5.8325 -0.5006 0.1358 29 8 3.9664 0.5849 1.2247 30 1 -0.3634 -1.0275 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6887 1.8463 -0.8900 35 1 3.7437 3.2377 0.6372 36 1 3.9526 2.9865 -1.1149 37 1 5.0625 3.8421 -1.9771 38 1 8.8920 3.8098 -1.8616 39 1 9.8724 5.2810 -3.8008 40 1 7.4671 7.4637 -5.2347 41 1 8.9330 6.5995 -5.7568 42 1 7.6532 8.1291 -8.8523 43 1 7.1710 1.5587 1.1626 44 1 5.8787 2.2910 2.1480 45 1 5.5949 -0.0009 -0.8033 46 1 6.9085 -0.6623 0.1993 47 1 5.3177 -1.4606 0.1768 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190193830.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:41 Heat of formation + Delta-G solvation = -14.916685 kcal Electronic energy + Delta-G solvation = -29643.163621 eV Core-core repulsion = 25443.325661 eV Total energy + Delta-G solvation = -4199.837960 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.15839 -40.29290 -38.98600 -37.89518 -35.03637 -34.89153 -33.48411 -33.11784 -30.98082 -30.21417 -29.30874 -27.70053 -27.12921 -26.29742 -25.45537 -23.40974 -22.85591 -21.70090 -20.55390 -20.06710 -19.26110 -18.24205 -17.30085 -16.98969 -16.60317 -16.58872 -16.26416 -15.94994 -15.54761 -15.52076 -15.02834 -14.76095 -14.57532 -14.37621 -14.16601 -14.03079 -13.69490 -13.05809 -12.82492 -12.75409 -12.55604 -12.32511 -12.22906 -12.12149 -11.98326 -11.80120 -11.65955 -11.50032 -11.06412 -10.90611 -10.80293 -10.47898 -10.36232 -10.27083 -10.09602 -10.05290 -9.70860 -9.48898 -8.83185 -8.64419 -8.12316 -7.43524 -6.25288 -4.30181 2.15886 2.60283 3.02936 3.15880 3.21318 3.27179 3.28919 3.35622 3.44682 3.79394 4.03055 4.31601 4.35631 4.48405 4.55303 4.59413 4.76135 4.77758 4.91259 4.95542 5.01127 5.04800 5.09795 5.10236 5.23522 5.32631 5.35137 5.49944 5.51588 5.57368 5.65031 5.78568 5.92749 6.02324 6.26989 6.51930 6.54777 6.71593 6.78742 6.84162 6.93912 7.06892 7.45100 7.67553 7.75380 7.91021 8.05202 8.48015 8.63988 8.80039 9.35502 10.83480 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012530 B = 0.002573 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.066820 B =10880.319254 C =12528.433148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.070 3.930 4 C 0.076 3.924 5 H 0.079 0.921 6 C 0.083 3.917 7 N -0.627 5.627 8 C 0.720 3.280 9 O -0.561 6.561 10 N -0.643 5.643 11 C 0.274 3.726 12 C -0.286 4.286 13 C 0.052 3.948 14 N -0.320 5.320 15 C 0.258 3.742 16 C -0.527 4.527 17 H 0.069 0.931 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.907 3.093 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.282 1.282 24 N -0.307 5.307 25 C 0.101 3.899 26 C 0.074 3.926 27 H 0.117 0.883 28 C -0.182 4.182 29 O -0.361 6.361 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.404 0.596 38 H 0.160 0.840 39 H 0.168 0.832 40 H 0.045 0.955 41 H 0.057 0.943 42 H 0.267 0.733 43 H 0.107 0.893 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.070 0.930 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.648 -13.235 19.700 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.007 4.007 4 C 0.017 3.983 5 H 0.097 0.903 6 C -0.041 4.041 7 N -0.366 5.366 8 C 0.421 3.579 9 O -0.436 6.436 10 N -0.295 5.295 11 C 0.020 3.980 12 C -0.317 4.317 13 C -0.098 4.098 14 N -0.102 5.102 15 C 0.141 3.859 16 C -0.566 4.566 17 H 0.087 0.913 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.735 3.265 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.208 1.208 24 N -0.138 5.138 25 C -0.022 4.022 26 C 0.015 3.985 27 H 0.134 0.866 28 C -0.239 4.239 29 O -0.280 6.280 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.241 0.759 38 H 0.177 0.823 39 H 0.185 0.815 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.125 0.875 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.089 0.911 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.667 -12.846 19.013 24.899 hybrid contribution -0.435 -0.186 -0.759 0.895 sum -10.102 -13.032 18.253 24.599 Atomic orbital electron populations 1.22765 0.80786 1.02945 1.00059 1.87938 1.19744 1.26950 1.95419 1.22459 0.91097 0.85777 1.01403 1.22407 0.93058 0.93223 0.89576 0.90305 1.22234 0.81115 0.97557 1.03237 1.47106 1.04904 1.58738 1.25896 1.15439 0.84848 0.78613 0.78984 1.90867 1.13315 1.64106 1.75268 1.41535 1.08970 1.50046 1.28942 1.18779 0.89223 0.97387 0.92580 1.21486 0.92131 1.11889 1.06221 1.22551 0.95053 0.98132 0.94072 1.49061 1.01117 1.36697 1.23292 1.19743 0.99199 0.88269 0.78707 1.21295 1.32739 1.07746 0.94771 0.91265 1.24948 0.95556 0.94817 0.98803 1.69928 1.42673 1.15357 1.25411 0.86279 0.79552 0.79339 0.81373 1.19576 1.20698 1.20759 1.77315 1.07979 1.18577 1.09959 1.22163 1.01419 0.91985 0.86629 1.22583 0.81022 0.94502 1.00355 0.86578 1.22360 1.02382 1.00251 0.98929 1.88068 1.22159 1.81194 1.36580 0.89516 0.93953 0.93938 0.92026 0.91317 0.89834 0.89194 0.75860 0.82251 0.81488 0.93757 0.92516 0.92384 0.87458 0.90668 0.92077 0.91057 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.65 10.67 -39.71 -0.42 -4.08 16 3 C 0.07 0.53 5.60 37.16 0.21 0.74 16 4 C 0.08 0.67 2.67 -26.58 -0.07 0.60 16 5 H 0.08 0.78 6.25 -51.93 -0.32 0.46 16 6 C 0.08 0.69 5.86 -3.53 -0.02 0.67 16 7 N -0.63 -6.90 2.55 -178.26 -0.45 -7.35 16 8 C 0.72 10.78 8.28 -86.92 -0.72 10.06 16 9 O -0.56 -10.00 12.96 5.28 0.07 -9.93 16 10 N -0.64 -10.17 5.36 -15.51 -0.08 -10.25 16 11 C 0.27 5.53 8.11 -154.37 -1.25 4.28 16 12 C -0.29 -5.71 9.61 -39.83 -0.38 -6.09 16 13 C 0.05 1.04 11.44 -17.24 -0.20 0.84 16 14 N -0.32 -7.43 3.67 -62.56 -0.23 -7.66 16 15 C 0.26 6.54 6.26 -5.19 -0.03 6.51 16 16 C -0.53 -14.62 9.24 -34.44 -0.32 -14.94 16 17 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.90 -25.25 13.29 55.43 0.74 -24.51 16 20 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 N -0.31 -7.05 12.42 31.44 0.39 -6.66 16 25 C 0.10 0.94 6.00 -3.75 -0.02 0.92 16 26 C 0.07 0.62 3.92 -26.79 -0.11 0.52 16 27 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 28 C -0.18 -1.66 8.80 37.16 0.33 -1.34 16 29 O -0.36 -3.56 10.19 -39.71 -0.40 -3.96 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.67 5.77 -51.93 -0.30 0.37 16 37 H 0.40 5.26 6.38 -40.82 -0.26 5.00 16 38 H 0.16 3.12 5.93 -52.49 -0.31 2.81 16 39 H 0.17 2.72 8.06 -52.49 -0.42 2.30 16 40 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 42 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.11 1.10 7.05 -51.93 -0.37 0.73 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.66 6.12 -51.93 -0.32 0.35 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 383.53 15.07 5.78 5.78 Total: -1.00 -33.98 383.53 -8.13 -42.11 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.92 Total: 4.60 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -1.57 Total: 5.67 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.36 Total: -56.43 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.76 Total: -17.97 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.98 -8.13 -42.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190193830.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.194 kcal (2) G-P(sol) polarization free energy of solvation -33.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds