Wall clock time and date at job start Tue Mar 31 2020 22:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99950 * 2 1 4 4 C 1.53003 * 109.47007 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.51206 * 304.90964 * 4 3 2 6 6 C 1.53292 * 109.51336 * 184.75049 * 4 3 2 7 7 N 1.47157 * 108.38218 * 187.77651 * 6 4 3 8 8 C 1.34781 * 120.97897 * 230.55494 * 7 6 4 9 9 O 1.21590 * 120.00038 * 355.01601 * 8 7 6 10 10 N 1.34774 * 119.99619 * 175.01511 * 8 7 6 11 11 C 1.40195 * 119.99572 * 185.21628 * 10 8 7 12 12 C 1.40397 * 125.97607 * 359.71422 * 11 10 8 13 13 C 1.35242 * 107.86827 * 179.83323 * 12 11 10 14 14 N 1.34959 * 107.85957 * 0.42480 * 13 12 11 15 15 C 1.46500 * 125.97729 * 179.71082 * 14 13 12 16 16 C 1.50705 * 109.47015 * 125.00162 * 15 14 13 17 17 H 1.07989 * 120.00095 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99705 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99937 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99981 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46841 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47199 * 119.99515 * 20 18 16 23 23 H 1.48494 * 109.47002 * 239.99583 * 20 18 16 24 24 N 1.31217 * 125.97077 * 180.02562 * 11 10 8 25 25 C 1.47143 * 118.03883 * 50.53866 * 7 6 4 26 26 C 1.53304 * 108.38411 * 309.46333 * 25 7 6 27 27 H 1.09002 * 109.55061 * 292.35172 * 26 25 7 28 28 C 1.53000 * 109.51453 * 172.22494 * 26 25 7 29 29 O 1.42963 * 109.22459 * 52.30007 * 26 25 7 30 30 H 1.09001 * 109.47539 * 59.98897 * 1 2 3 31 31 H 1.08999 * 109.47471 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46853 * 299.99861 * 1 2 3 33 33 H 1.09004 * 109.46898 * 60.01025 * 3 2 1 34 34 H 1.08991 * 109.47580 * 300.00472 * 3 2 1 35 35 H 1.09000 * 109.68454 * 307.49907 * 6 4 3 36 36 H 1.09003 * 109.68061 * 68.01436 * 6 4 3 37 37 H 0.96999 * 120.00492 * 5.21311 * 10 8 7 38 38 H 1.08004 * 126.06477 * 359.97438 * 12 11 10 39 39 H 1.08006 * 126.06983 * 180.18108 * 13 12 11 40 40 H 1.09004 * 109.47344 * 245.00011 * 15 14 13 41 41 H 1.09002 * 109.47416 * 4.99913 * 15 14 13 42 42 H 0.97004 * 119.99778 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.68424 * 189.74059 * 25 7 6 44 44 H 1.08999 * 109.68534 * 69.18276 * 25 7 6 45 45 H 1.08994 * 109.47382 * 300.25225 * 28 26 25 46 46 H 1.09007 * 109.46864 * 60.25579 * 28 26 25 47 47 H 1.09001 * 109.46748 * 180.24749 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8523 0.5696 0.8417 6 6 4.1597 2.5796 0.1190 7 7 5.6135 2.4554 -0.0720 8 6 6.4777 2.9993 0.8078 9 8 6.0629 3.6796 1.7261 10 7 7.8017 2.7888 0.6694 11 6 8.6921 3.2616 1.6437 12 6 8.3441 3.9706 2.8045 13 6 9.4827 4.2415 3.4823 14 7 10.5151 3.7340 2.7766 15 6 11.9304 3.8086 3.1477 16 6 12.5159 2.4202 3.1771 17 1 11.8957 1.5677 2.9432 18 6 13.8431 2.2386 3.5035 19 7 14.5981 3.2769 3.7888 20 14 14.5690 0.5178 3.5393 21 1 13.5192 -0.4698 3.1820 22 1 15.6842 0.4306 2.5625 23 1 15.0806 0.2246 4.9021 24 7 9.9969 3.1238 1.6272 25 6 6.0958 1.7197 -1.2514 26 6 5.3772 0.3665 -1.3044 27 1 5.7015 -0.2517 -0.4673 28 6 5.7119 -0.3387 -2.6203 29 8 3.9659 0.5795 -1.2223 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6887 1.8463 0.8901 34 1 1.6886 1.8464 -0.8898 35 1 3.7435 3.2349 -0.6462 36 1 3.9524 2.9910 1.1069 37 1 8.1386 2.3103 -0.1041 38 1 7.3443 4.2483 3.1042 39 1 9.5535 4.7733 4.4196 40 1 12.4664 4.4135 2.4163 41 1 12.0240 4.2634 4.1339 42 1 15.5320 3.1491 4.0181 43 1 7.1712 1.5613 -1.1709 44 1 5.8746 2.2883 -2.1547 45 1 5.3891 0.2808 -3.4569 46 1 6.7881 -0.5008 -2.6821 47 1 5.1971 -1.2987 -2.6591 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190193860.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:48 Heat of formation + Delta-G solvation = -40.641244 kcal Electronic energy + Delta-G solvation = -29309.676022 eV Core-core repulsion = 25108.722562 eV Total energy + Delta-G solvation = -4200.953460 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.37387 -41.49903 -39.96213 -38.55312 -36.37810 -35.99197 -35.27145 -34.34676 -32.73159 -31.05521 -30.87304 -28.73920 -28.14245 -27.38832 -26.21733 -24.88040 -23.16879 -23.00313 -22.16716 -21.73031 -20.62704 -19.30495 -18.69579 -18.29414 -17.98016 -17.59795 -17.15879 -17.00907 -16.66715 -16.50299 -16.12223 -16.02185 -15.91883 -15.52299 -15.50565 -14.73876 -14.50441 -14.43571 -14.21299 -13.92762 -13.67692 -13.64920 -13.34003 -13.06639 -12.99152 -12.93683 -12.72434 -12.60546 -12.40130 -12.30890 -12.09994 -12.00590 -11.77511 -11.63800 -11.40289 -11.23399 -11.08684 -10.72192 -10.63731 -9.86357 -9.68203 -9.06778 -8.32793 -6.46675 0.95474 1.05565 1.37397 1.38790 1.51689 1.63070 1.91449 2.31347 2.34821 2.50320 2.69174 2.77842 2.98902 3.59884 3.75716 3.84951 3.91523 3.97787 4.06944 4.13419 4.24287 4.33072 4.34440 4.47832 4.49732 4.58186 4.59971 4.64223 4.71839 4.80760 4.87902 4.89344 4.91714 4.93200 4.99763 5.02177 5.06433 5.28467 5.34138 5.54748 5.61055 5.82491 5.92582 6.09111 6.23083 6.28272 6.49742 6.66207 7.06335 7.23219 7.25583 8.74896 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017033 B = 0.002224 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.495452 B =12585.011798 C =13331.542611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.073 3.927 4 C 0.082 3.918 5 H 0.055 0.945 6 C 0.107 3.893 7 N -0.623 5.623 8 C 0.718 3.282 9 O -0.592 6.592 10 N -0.637 5.637 11 C 0.283 3.717 12 C -0.293 4.293 13 C 0.058 3.942 14 N -0.343 5.343 15 C 0.272 3.728 16 C -0.546 4.546 17 H 0.052 0.948 18 C 0.018 3.982 19 N -0.920 5.920 20 Si 0.972 3.028 21 H -0.275 1.275 22 H -0.273 1.273 23 H -0.271 1.271 24 N -0.346 5.346 25 C 0.076 3.924 26 C 0.073 3.927 27 H 0.054 0.946 28 C -0.139 4.139 29 O -0.374 6.374 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.417 0.583 38 H 0.167 0.833 39 H 0.202 0.798 40 H 0.022 0.978 41 H 0.059 0.941 42 H 0.272 0.728 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.168 -4.287 -11.530 28.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C -0.004 4.004 4 C 0.023 3.977 5 H 0.073 0.927 6 C -0.015 4.015 7 N -0.360 5.360 8 C 0.419 3.581 9 O -0.470 6.470 10 N -0.290 5.290 11 C 0.027 3.973 12 C -0.324 4.324 13 C -0.090 4.090 14 N -0.125 5.125 15 C 0.153 3.847 16 C -0.584 4.584 17 H 0.070 0.930 18 C -0.183 4.183 19 N -0.559 5.559 20 Si 0.796 3.204 21 H -0.199 1.199 22 H -0.198 1.198 23 H -0.196 1.196 24 N -0.177 5.177 25 C -0.047 4.047 26 C 0.015 3.985 27 H 0.072 0.928 28 C -0.197 4.197 29 O -0.294 6.294 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.257 0.743 38 H 0.184 0.816 39 H 0.219 0.781 40 H 0.040 0.960 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.115 0.885 44 H 0.120 0.880 45 H 0.093 0.907 46 H 0.109 0.891 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -25.199 -4.419 -11.580 28.082 hybrid contribution 0.297 -0.304 0.448 0.618 sum -24.902 -4.723 -11.132 27.683 Atomic orbital electron populations 1.22927 0.79202 1.03766 1.01080 1.87889 1.21619 1.28108 1.95666 1.22495 0.89732 0.85403 1.02799 1.22450 0.94423 0.92952 0.87826 0.92656 1.22145 0.77315 0.96930 1.05142 1.47220 1.06064 1.57419 1.25324 1.15577 0.80108 0.80116 0.82303 1.90831 1.77357 1.43624 1.35157 1.41528 1.03716 1.59253 1.24517 1.19064 0.88593 0.98188 0.91410 1.21663 1.00168 1.12982 0.97569 1.23156 0.86634 0.99614 0.99627 1.48825 1.08152 1.40637 1.14922 1.19357 0.71377 0.97923 0.96024 1.21420 0.96042 0.92539 1.48379 0.92977 1.25744 0.96762 1.01739 0.94042 1.70002 1.07909 1.31498 1.46493 0.85294 0.78073 0.78715 0.78286 1.19934 1.19817 1.19574 1.77241 1.07342 1.24530 1.08591 1.22718 1.00044 0.93526 0.88406 1.22566 0.81094 0.94385 1.00489 0.92815 1.21740 1.02969 1.00721 0.94224 1.88015 1.22592 1.81280 1.37496 0.92925 0.88928 0.92836 0.89571 0.90821 0.88391 0.88080 0.74312 0.81596 0.78109 0.95986 0.92275 0.91858 0.88478 0.87967 0.90669 0.89100 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -7.49 10.67 -144.45 -1.54 -9.04 16 3 C 0.07 1.02 5.61 71.98 0.40 1.42 16 4 C 0.08 1.46 3.06 30.69 0.09 1.55 16 5 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 6 C 0.11 1.90 5.91 86.35 0.51 2.41 16 7 N -0.62 -13.35 3.02 -835.34 -2.52 -15.87 16 8 C 0.72 21.32 8.28 179.05 1.48 22.80 16 9 O -0.59 -21.02 12.99 -4.00 -0.05 -21.08 16 10 N -0.64 -20.03 5.37 -321.23 -1.72 -21.75 16 11 C 0.28 11.46 8.11 133.31 1.08 12.54 16 12 C -0.29 -11.62 9.61 22.10 0.21 -11.40 16 13 C 0.06 2.31 11.44 83.52 0.96 3.27 16 14 N -0.34 -16.19 3.67 -351.83 -1.29 -17.48 16 15 C 0.27 14.11 6.26 85.63 0.54 14.64 16 16 C -0.55 -30.77 9.24 25.60 0.24 -30.53 16 17 H 0.05 3.06 7.81 -2.92 -0.02 3.04 16 18 C 0.02 0.96 5.46 84.66 0.46 1.42 16 19 N -0.92 -52.03 13.29 21.45 0.28 -51.75 16 20 Si 0.97 43.55 29.54 68.60 2.03 45.58 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 N -0.35 -16.16 12.42 -54.43 -0.68 -16.84 16 25 C 0.08 1.18 5.92 86.36 0.51 1.69 16 26 C 0.07 1.18 3.40 30.70 0.10 1.29 16 27 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 28 C -0.14 -1.61 9.57 71.98 0.69 -0.92 16 29 O -0.37 -7.15 9.99 -144.45 -1.44 -8.59 16 30 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.10 1.96 7.12 -2.39 -0.02 1.94 16 37 H 0.42 10.74 6.34 -92.71 -0.59 10.15 16 38 H 0.17 6.41 5.93 -2.91 -0.02 6.39 16 39 H 0.20 6.27 8.06 -2.91 -0.02 6.25 16 40 H 0.02 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.06 2.99 8.07 -2.39 -0.02 2.97 16 42 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 43 H 0.10 1.37 5.66 -2.39 -0.01 1.35 16 44 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 47 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -73.43 388.26 1.98 -71.45 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.40 Total: 23.66 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: 8.52 Total: 21.70 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -5.93 Total: -123.69 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -3.04 Total: -38.70 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -73.43 1.98 -71.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190193860.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.806 kcal (2) G-P(sol) polarization free energy of solvation -73.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds