Wall clock time and date at job start Tue Mar 31 2020 22:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46636 * 2 1 4 4 O 1.42898 * 109.47127 * 119.99756 * 2 1 3 5 5 C 1.53001 * 109.47145 * 240.00047 * 2 1 3 6 6 C 1.52995 * 109.46829 * 173.22674 * 5 2 1 7 7 H 1.09002 * 109.68565 * 298.57891 * 6 5 2 8 8 C 1.53298 * 109.68481 * 59.09867 * 6 5 2 9 9 O 1.42960 * 109.22745 * 172.02393 * 8 6 5 10 10 C 1.42966 * 114.16594 * 297.42230 * 9 8 6 11 11 C 1.53291 * 109.22271 * 62.57602 * 10 9 8 12 12 N 1.47147 * 108.39045 * 307.69980 * 11 10 9 13 13 C 1.34774 * 120.98371 * 230.56353 * 12 11 10 14 14 O 1.21594 * 119.99712 * 185.33873 * 13 12 11 15 15 N 1.34775 * 120.00428 * 5.33187 * 13 12 11 16 16 C 1.40187 * 120.00491 * 174.79206 * 15 13 12 17 17 C 1.40404 * 125.97006 * 359.71169 * 16 15 13 18 18 C 1.35250 * 107.86727 * 179.82589 * 17 16 15 19 19 N 1.34967 * 107.85854 * 0.43931 * 18 17 16 20 20 C 1.46495 * 125.98036 * 179.74432 * 19 18 17 21 21 C 1.50696 * 109.47160 * 124.99420 * 20 19 18 22 22 H 1.08002 * 120.00101 * 0.02562 * 21 20 19 23 23 C 1.37883 * 120.00025 * 180.02562 * 21 20 19 24 24 N 1.31513 * 119.99868 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 119.99707 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47130 * 90.00341 * 25 23 21 27 27 H 1.48502 * 109.46953 * 209.99736 * 25 23 21 28 28 H 1.48493 * 109.47416 * 330.00166 * 25 23 21 29 29 N 1.31214 * 125.97594 * 180.02562 * 16 15 13 30 30 H 1.09002 * 109.47055 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47482 * 299.99443 * 1 2 3 32 32 H 1.09004 * 109.47322 * 60.00332 * 1 2 3 33 33 H 0.96705 * 114.00097 * 60.00613 * 4 2 1 34 34 H 1.08995 * 109.46988 * 293.22726 * 5 2 1 35 35 H 1.08995 * 109.46929 * 53.22804 * 5 2 1 36 36 H 1.09005 * 109.50771 * 291.94850 * 8 6 5 37 37 H 1.08995 * 109.51001 * 52.04915 * 8 6 5 38 38 H 1.09001 * 109.51024 * 182.50522 * 10 9 8 39 39 H 1.08998 * 109.51209 * 302.65537 * 10 9 8 40 40 H 1.09000 * 109.68110 * 67.42857 * 11 10 9 41 41 H 1.09009 * 109.68015 * 187.93814 * 11 10 9 42 42 H 0.97006 * 119.99270 * 354.78949 * 15 13 12 43 43 H 1.08003 * 126.06932 * 0.02562 * 17 16 15 44 44 H 1.07994 * 126.07200 * 180.17779 * 18 17 16 45 45 H 1.08995 * 109.47469 * 244.99629 * 20 19 18 46 46 H 1.09003 * 109.46595 * 4.99606 * 20 19 18 47 47 H 0.97005 * 119.99642 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7212 -1.2493 6 6 3.5605 -0.5755 -1.3372 7 1 3.8241 0.4788 -1.4212 8 6 4.2097 -1.1715 -0.0828 9 8 5.6286 -1.2000 -0.2554 10 6 6.0704 -2.0270 -1.3347 11 6 5.5165 -1.4748 -2.6530 12 7 4.0615 -1.3074 -2.5114 13 6 3.2126 -1.8101 -3.4296 14 8 2.0217 -1.5790 -3.3475 15 7 3.6837 -2.5688 -4.4390 16 6 2.7922 -3.1815 -5.3306 17 6 1.3915 -3.0946 -5.2864 18 6 0.8981 -3.8188 -6.3167 19 7 1.9422 -4.3536 -6.9842 20 6 1.8580 -5.2143 -8.1666 21 6 2.6841 -4.6220 -9.2790 22 1 3.2188 -3.6970 -9.1210 23 6 2.7573 -5.2608 -10.4987 24 7 3.4787 -4.7441 -11.4694 25 14 1.8331 -6.8610 -10.7718 26 1 0.4727 -6.5650 -11.2884 27 1 2.5667 -7.6941 -11.7583 28 1 1.7252 -7.5960 -9.4861 29 7 3.1206 -3.9411 -6.3489 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.7211 -1.5952 1.2329 34 1 1.7790 -1.7779 -1.1907 35 1 1.5811 -0.2821 -2.1350 36 1 3.9604 -0.5577 0.7827 37 1 3.8405 -2.1854 0.0714 38 1 7.1599 -2.0286 -1.3696 39 1 5.7087 -3.0443 -1.1855 40 1 5.9775 -0.5112 -2.8700 41 1 5.7292 -2.1738 -3.4620 42 1 4.6398 -2.6909 -4.5485 43 1 0.8112 -2.5443 -4.5606 44 1 -0.1460 -3.9496 -6.5595 45 1 2.2368 -6.2065 -7.9215 46 1 0.8189 -5.2910 -8.4868 47 1 3.5305 -5.1938 -12.3274 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343439804.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:35 Heat of formation + Delta-G solvation = -8.296568 kcal Electronic energy + Delta-G solvation = -30101.768154 eV Core-core repulsion = 25902.217265 eV Total energy + Delta-G solvation = -4199.550890 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.27106 -40.32936 -38.66558 -37.98810 -35.18779 -34.98768 -33.46601 -32.69242 -31.22056 -31.06812 -29.43352 -28.57387 -27.06566 -26.35545 -23.86199 -23.20300 -22.37025 -21.70494 -21.04092 -20.07643 -19.36658 -18.11203 -17.13213 -16.87166 -16.78957 -16.50295 -16.27329 -15.80324 -15.62543 -15.40374 -15.14136 -14.89181 -14.55442 -14.50848 -13.93841 -13.60416 -13.48788 -13.15748 -13.05989 -12.77921 -12.55834 -12.36561 -12.25598 -12.17506 -12.00473 -11.83053 -11.41674 -11.28281 -11.09416 -10.98492 -10.76494 -10.67725 -10.43179 -10.28990 -10.03201 -9.97945 -9.55244 -9.17762 -8.78694 -8.75128 -8.20578 -7.51255 -6.25376 -4.27707 2.14812 2.53470 2.96993 3.12670 3.17662 3.20721 3.26837 3.52872 3.72637 3.90660 4.09434 4.21083 4.36656 4.56144 4.59321 4.70782 4.80018 4.83358 4.89046 5.01393 5.02419 5.13940 5.24709 5.33815 5.38492 5.44908 5.50854 5.60587 5.66593 5.70410 5.85805 5.94990 6.03569 6.11031 6.32259 6.41226 6.42640 6.56096 6.68091 6.79377 6.83045 7.25055 7.31486 7.39015 7.73706 7.80464 8.31755 8.47462 8.55435 8.84482 9.29572 10.87351 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019237 B = 0.002474 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.201590 B =11316.372400 C =12343.625892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.093 3.907 3 H 0.097 0.903 4 O -0.567 6.567 5 C -0.146 4.146 6 C 0.137 3.863 7 H 0.078 0.922 8 C 0.048 3.952 9 O -0.381 6.381 10 C 0.047 3.953 11 C 0.073 3.927 12 N -0.629 5.629 13 C 0.720 3.280 14 O -0.559 6.559 15 N -0.644 5.644 16 C 0.278 3.722 17 C -0.282 4.282 18 C 0.051 3.949 19 N -0.320 5.320 20 C 0.233 3.767 21 C -0.535 4.535 22 H 0.085 0.915 23 C 0.076 3.924 24 N -0.888 5.888 25 Si 0.873 3.127 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.264 1.264 29 N -0.300 5.300 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.374 0.626 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.131 0.869 37 H 0.051 0.949 38 H 0.106 0.894 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.405 0.595 43 H 0.162 0.838 44 H 0.168 0.832 45 H 0.041 0.959 46 H 0.049 0.951 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.892 6.981 24.201 25.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.034 3.966 3 H 0.115 0.885 4 O -0.373 6.373 5 C -0.184 4.184 6 C 0.034 3.966 7 H 0.096 0.904 8 C -0.029 4.029 9 O -0.300 6.300 10 C -0.031 4.031 11 C -0.051 4.051 12 N -0.369 5.369 13 C 0.422 3.578 14 O -0.436 6.436 15 N -0.296 5.296 16 C 0.024 3.976 17 C -0.313 4.313 18 C -0.099 4.099 19 N -0.102 5.102 20 C 0.114 3.886 21 C -0.573 4.573 22 H 0.103 0.897 23 C -0.128 4.128 24 N -0.525 5.525 25 Si 0.699 3.301 26 H -0.197 1.197 27 H -0.205 1.205 28 H -0.189 1.189 29 N -0.131 5.131 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.222 0.778 34 H 0.093 0.907 35 H 0.135 0.865 36 H 0.148 0.852 37 H 0.069 0.931 38 H 0.124 0.876 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.242 0.758 43 H 0.180 0.820 44 H 0.185 0.815 45 H 0.059 0.941 46 H 0.067 0.933 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.351 7.188 23.521 24.597 hybrid contribution -0.890 -1.263 -0.580 1.650 sum -1.241 5.925 22.941 23.726 Atomic orbital electron populations 1.22403 0.96036 1.02706 1.02599 1.22152 0.93389 0.96733 0.84368 0.88491 1.86525 1.76412 1.29399 1.45012 1.22923 0.92996 1.02894 0.99556 1.21833 0.95335 0.95601 0.83860 0.90385 1.23536 0.79898 1.01520 0.97920 1.88000 1.22583 1.68580 1.50795 1.22955 1.00308 0.93968 0.85886 1.22417 0.80725 1.02710 0.99214 1.47341 1.05614 1.59467 1.24441 1.15559 0.84865 0.78407 0.79019 1.90832 1.13887 1.63049 1.75782 1.41700 1.09155 1.50670 1.28123 1.18800 0.89373 0.97540 0.91931 1.21504 0.92249 1.12218 1.05360 1.22551 0.94775 0.98193 0.94337 1.48594 1.01501 1.37278 1.22787 1.20035 0.98634 0.89293 0.80688 1.21110 1.30426 1.11145 0.94594 0.89663 1.24838 0.95010 0.97372 0.95553 1.69875 1.39286 1.39490 1.03839 0.86904 0.80396 0.83856 0.78931 1.19703 1.20532 1.18871 1.77391 1.07629 1.19320 1.08750 0.92257 0.92100 0.91329 0.77787 0.90675 0.86536 0.85169 0.93093 0.87583 0.92558 0.90009 0.89347 0.75800 0.82043 0.81461 0.94078 0.93346 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 9.53 37.16 0.35 -0.92 16 2 C 0.09 0.69 3.45 -26.73 -0.09 0.59 16 3 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 4 O -0.57 -4.03 9.98 -35.23 -0.35 -4.38 16 5 C -0.15 -1.38 3.01 -26.73 -0.08 -1.46 16 6 C 0.14 1.31 3.22 -67.42 -0.22 1.09 16 7 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 8 C 0.05 0.42 5.02 37.31 0.19 0.61 16 9 O -0.38 -3.73 10.74 -35.23 -0.38 -4.11 16 10 C 0.05 0.36 6.98 37.31 0.26 0.62 16 11 C 0.07 0.61 6.63 -3.54 -0.02 0.59 16 12 N -0.63 -6.83 3.02 -170.43 -0.51 -7.34 16 13 C 0.72 10.20 8.10 -86.92 -0.70 9.50 16 14 O -0.56 -8.85 9.25 5.28 0.05 -8.80 16 15 N -0.64 -9.92 5.37 -15.51 -0.08 -10.00 16 16 C 0.28 5.43 8.11 -154.36 -1.25 4.18 16 17 C -0.28 -5.30 9.61 -39.83 -0.38 -5.69 16 18 C 0.05 0.96 11.44 -17.24 -0.20 0.76 16 19 N -0.32 -7.15 3.67 -62.57 -0.23 -7.37 16 20 C 0.23 5.45 5.33 -5.20 -0.03 5.42 16 21 C -0.53 -14.99 9.79 -34.44 -0.34 -15.33 16 22 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 23 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 24 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 25 Si 0.87 19.97 27.47 -169.99 -4.67 15.30 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 29 N -0.30 -6.78 12.42 31.44 0.39 -6.39 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.37 1.76 9.05 45.56 0.41 2.17 16 34 H 0.07 0.81 7.45 -51.93 -0.39 0.42 16 35 H 0.12 1.38 6.08 -51.93 -0.32 1.06 16 36 H 0.13 1.10 5.97 -51.93 -0.31 0.79 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 0.67 5.66 -51.92 -0.29 0.37 16 42 H 0.40 5.28 6.34 -40.82 -0.26 5.02 16 43 H 0.16 2.90 5.93 -52.48 -0.31 2.59 16 44 H 0.17 2.48 8.06 -52.49 -0.42 2.06 16 45 H 0.04 0.96 7.20 -51.93 -0.37 0.59 16 46 H 0.05 1.03 7.50 -51.93 -0.39 0.64 16 47 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 371.20 15.07 5.59 5.59 Total: -1.00 -33.93 371.20 -8.07 -42.01 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -6.05 Total: 9.21 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -2.61 Total: 2.00 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.34 Total: -56.82 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.68 Total: -17.29 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.67 Total: 15.30 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.93 -8.07 -42.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343439804.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.711 kcal (2) G-P(sol) polarization free energy of solvation -33.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds