Wall clock time and date at job start Tue Mar 31 2020 22:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46636 * 2 1 4 4 O 1.42898 * 109.47127 * 119.99756 * 2 1 3 5 5 C 1.53001 * 109.47145 * 240.00047 * 2 1 3 6 6 C 1.52995 * 109.46829 * 173.22674 * 5 2 1 7 7 H 1.09002 * 109.68565 * 298.57891 * 6 5 2 8 8 C 1.53298 * 109.68481 * 59.09867 * 6 5 2 9 9 O 1.42960 * 109.22745 * 172.02393 * 8 6 5 10 10 C 1.42966 * 114.16594 * 297.42230 * 9 8 6 11 11 C 1.53291 * 109.22271 * 62.57602 * 10 9 8 12 12 N 1.47147 * 108.39045 * 307.69980 * 11 10 9 13 13 C 1.34774 * 120.98371 * 230.56353 * 12 11 10 14 14 O 1.21594 * 119.99712 * 185.33873 * 13 12 11 15 15 N 1.34775 * 120.00428 * 5.33187 * 13 12 11 16 16 C 1.40187 * 120.00491 * 174.79206 * 15 13 12 17 17 C 1.40404 * 125.97006 * 359.71169 * 16 15 13 18 18 C 1.35250 * 107.86727 * 179.82589 * 17 16 15 19 19 N 1.34967 * 107.85854 * 0.43931 * 18 17 16 20 20 C 1.46495 * 125.98036 * 179.74432 * 19 18 17 21 21 C 1.50696 * 109.47160 * 124.99420 * 20 19 18 22 22 H 1.08002 * 120.00101 * 0.02562 * 21 20 19 23 23 C 1.37883 * 120.00025 * 180.02562 * 21 20 19 24 24 N 1.31513 * 119.99868 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 119.99707 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47130 * 90.00341 * 25 23 21 27 27 H 1.48502 * 109.46953 * 209.99736 * 25 23 21 28 28 H 1.48493 * 109.47416 * 330.00166 * 25 23 21 29 29 N 1.31214 * 125.97594 * 180.02562 * 16 15 13 30 30 H 1.09002 * 109.47055 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47482 * 299.99443 * 1 2 3 32 32 H 1.09004 * 109.47322 * 60.00332 * 1 2 3 33 33 H 0.96705 * 114.00097 * 60.00613 * 4 2 1 34 34 H 1.08995 * 109.46988 * 293.22726 * 5 2 1 35 35 H 1.08995 * 109.46929 * 53.22804 * 5 2 1 36 36 H 1.09005 * 109.50771 * 291.94850 * 8 6 5 37 37 H 1.08995 * 109.51001 * 52.04915 * 8 6 5 38 38 H 1.09001 * 109.51024 * 182.50522 * 10 9 8 39 39 H 1.08998 * 109.51209 * 302.65537 * 10 9 8 40 40 H 1.09000 * 109.68110 * 67.42857 * 11 10 9 41 41 H 1.09009 * 109.68015 * 187.93814 * 11 10 9 42 42 H 0.97006 * 119.99270 * 354.78949 * 15 13 12 43 43 H 1.08003 * 126.06932 * 0.02562 * 17 16 15 44 44 H 1.07994 * 126.07200 * 180.17779 * 18 17 16 45 45 H 1.08995 * 109.47469 * 244.99629 * 20 19 18 46 46 H 1.09003 * 109.46595 * 4.99606 * 20 19 18 47 47 H 0.97005 * 119.99642 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7212 -1.2493 6 6 3.5605 -0.5755 -1.3372 7 1 3.8241 0.4788 -1.4212 8 6 4.2097 -1.1715 -0.0828 9 8 5.6286 -1.2000 -0.2554 10 6 6.0704 -2.0270 -1.3347 11 6 5.5165 -1.4748 -2.6530 12 7 4.0615 -1.3074 -2.5114 13 6 3.2126 -1.8101 -3.4296 14 8 2.0217 -1.5790 -3.3475 15 7 3.6837 -2.5688 -4.4390 16 6 2.7922 -3.1815 -5.3306 17 6 1.3915 -3.0946 -5.2864 18 6 0.8981 -3.8188 -6.3167 19 7 1.9422 -4.3536 -6.9842 20 6 1.8580 -5.2143 -8.1666 21 6 2.6841 -4.6220 -9.2790 22 1 3.2188 -3.6970 -9.1210 23 6 2.7573 -5.2608 -10.4987 24 7 3.4787 -4.7441 -11.4694 25 14 1.8331 -6.8610 -10.7718 26 1 0.4727 -6.5650 -11.2884 27 1 2.5667 -7.6941 -11.7583 28 1 1.7252 -7.5960 -9.4861 29 7 3.1206 -3.9411 -6.3489 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.7211 -1.5952 1.2329 34 1 1.7790 -1.7779 -1.1907 35 1 1.5811 -0.2821 -2.1350 36 1 3.9604 -0.5577 0.7827 37 1 3.8405 -2.1854 0.0714 38 1 7.1599 -2.0286 -1.3696 39 1 5.7087 -3.0443 -1.1855 40 1 5.9775 -0.5112 -2.8700 41 1 5.7292 -2.1738 -3.4620 42 1 4.6398 -2.6909 -4.5485 43 1 0.8112 -2.5443 -4.5606 44 1 -0.1460 -3.9496 -6.5595 45 1 2.2368 -6.2065 -7.9215 46 1 0.8189 -5.2910 -8.4868 47 1 3.5305 -5.1938 -12.3274 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343439804.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:35 Heat of formation + Delta-G solvation = -33.848545 kcal Electronic energy + Delta-G solvation = -30102.876171 eV Core-core repulsion = 25902.217265 eV Total energy + Delta-G solvation = -4200.658907 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.44248 -41.61804 -39.62206 -38.63162 -36.44821 -35.93419 -35.25920 -33.74168 -32.81419 -31.74371 -30.96315 -29.55693 -28.70083 -27.10585 -24.98948 -24.28875 -23.70738 -22.49152 -22.26511 -21.48366 -20.54968 -19.10820 -19.10475 -18.17642 -17.63730 -17.49664 -17.09133 -16.95129 -16.59625 -16.32383 -16.20347 -15.92357 -15.79218 -15.55573 -15.31486 -14.83683 -14.70613 -14.40683 -14.24411 -13.88941 -13.84663 -13.66086 -13.47631 -13.00978 -12.87724 -12.69099 -12.56469 -12.50000 -12.31730 -12.17074 -11.92455 -11.82011 -11.67562 -11.58062 -11.40607 -11.22298 -10.95578 -10.87133 -10.17329 -9.79952 -9.60249 -9.02568 -8.37770 -6.48010 0.97826 1.08871 1.36464 1.39519 1.49202 1.65856 1.93153 2.28819 2.35715 2.70015 2.86984 2.94987 3.47271 3.65673 3.83385 3.87615 3.93227 4.03188 4.12144 4.15966 4.17265 4.22236 4.37208 4.46153 4.58918 4.60959 4.69152 4.76172 4.78221 4.84891 4.89739 4.93219 4.96421 4.98025 5.08803 5.24264 5.26870 5.36093 5.38023 5.55462 5.65008 5.91721 6.02209 6.14489 6.41243 6.52701 6.59590 6.84732 7.06435 7.15184 7.34212 8.79403 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019237 B = 0.002474 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.201590 B =11316.372400 C =12343.625892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.103 3.897 3 H 0.102 0.898 4 O -0.571 6.571 5 C -0.133 4.133 6 C 0.133 3.867 7 H 0.083 0.917 8 C 0.058 3.942 9 O -0.394 6.394 10 C 0.048 3.952 11 C 0.067 3.933 12 N -0.623 5.623 13 C 0.715 3.285 14 O -0.578 6.578 15 N -0.642 5.642 16 C 0.284 3.716 17 C -0.290 4.290 18 C 0.060 3.940 19 N -0.345 5.345 20 C 0.240 3.760 21 C -0.547 4.547 22 H 0.025 0.975 23 C 0.014 3.986 24 N -0.943 5.943 25 Si 0.956 3.044 26 H -0.253 1.253 27 H -0.281 1.281 28 H -0.239 1.239 29 N -0.352 5.352 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.385 0.615 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.137 0.863 37 H 0.051 0.949 38 H 0.130 0.870 39 H 0.055 0.945 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.413 0.587 43 H 0.171 0.829 44 H 0.210 0.790 45 H 0.045 0.955 46 H 0.082 0.918 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.127 6.007 25.939 26.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.044 3.956 3 H 0.120 0.880 4 O -0.379 6.379 5 C -0.171 4.171 6 C 0.031 3.969 7 H 0.101 0.899 8 C -0.019 4.019 9 O -0.313 6.313 10 C -0.030 4.030 11 C -0.056 4.056 12 N -0.361 5.361 13 C 0.417 3.583 14 O -0.455 6.455 15 N -0.296 5.296 16 C 0.028 3.972 17 C -0.321 4.321 18 C -0.088 4.088 19 N -0.127 5.127 20 C 0.120 3.880 21 C -0.585 4.585 22 H 0.044 0.956 23 C -0.185 4.185 24 N -0.582 5.582 25 Si 0.777 3.223 26 H -0.177 1.177 27 H -0.207 1.207 28 H -0.162 1.162 29 N -0.183 5.183 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.235 0.765 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.154 0.846 37 H 0.069 0.931 38 H 0.148 0.852 39 H 0.073 0.927 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.252 0.748 43 H 0.188 0.812 44 H 0.227 0.773 45 H 0.063 0.937 46 H 0.099 0.901 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.562 6.243 25.327 26.132 hybrid contribution -0.415 -0.797 -1.013 1.354 sum -1.977 5.446 24.314 24.995 Atomic orbital electron populations 1.22373 0.95716 1.02696 1.02677 1.22008 0.93509 0.96640 0.83484 0.87994 1.86501 1.76513 1.30373 1.44474 1.22702 0.92809 1.01937 0.99655 1.22007 0.95498 0.95756 0.83676 0.89918 1.23471 0.79568 1.01505 0.97373 1.87987 1.22870 1.68991 1.51419 1.23080 1.01662 0.93453 0.84756 1.22650 0.79131 1.03671 1.00108 1.47431 1.06406 1.58461 1.23777 1.15731 0.85085 0.78347 0.79127 1.90827 1.14859 1.63631 1.76201 1.41773 1.09256 1.50646 1.27895 1.19130 0.90517 0.96236 0.91270 1.21720 0.92056 1.12488 1.05795 1.23251 0.95917 0.96426 0.93205 1.48481 1.02321 1.38653 1.23290 1.19868 0.99254 0.89179 0.79673 1.21240 1.30880 1.09509 0.96857 0.95620 1.25933 0.95890 1.01949 0.94722 1.70055 1.41505 1.41908 1.04707 0.85609 0.79075 0.77870 0.79782 1.17737 1.20685 1.16183 1.77304 1.08894 1.21601 1.10466 0.92336 0.91384 0.91843 0.76511 0.92098 0.88926 0.84587 0.93104 0.85187 0.92708 0.88896 0.88676 0.74782 0.81172 0.77347 0.93706 0.90066 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 9.53 71.98 0.69 -1.63 16 2 C 0.10 1.40 3.45 30.59 0.11 1.51 16 3 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 4 O -0.57 -7.14 9.98 -148.98 -1.49 -8.63 16 5 C -0.13 -2.44 3.01 30.59 0.09 -2.35 16 6 C 0.13 2.40 3.22 44.96 0.14 2.55 16 7 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 8 C 0.06 0.92 5.02 72.08 0.36 1.28 16 9 O -0.39 -6.96 10.74 -148.98 -1.60 -8.56 16 10 C 0.05 0.66 6.98 72.08 0.50 1.16 16 11 C 0.07 1.04 6.63 86.35 0.57 1.61 16 12 N -0.62 -13.01 3.02 -811.38 -2.45 -15.46 16 13 C 0.72 20.10 8.10 179.06 1.45 21.55 16 14 O -0.58 -18.23 9.25 -4.01 -0.04 -18.27 16 15 N -0.64 -19.83 5.37 -321.23 -1.72 -21.55 16 16 C 0.28 11.19 8.11 133.32 1.08 12.27 16 17 C -0.29 -10.71 9.61 22.11 0.21 -10.50 16 18 C 0.06 2.17 11.44 83.52 0.96 3.12 16 19 N -0.35 -15.34 3.67 -351.86 -1.29 -16.63 16 20 C 0.24 11.03 5.33 85.63 0.46 11.49 16 21 C -0.55 -31.49 9.79 25.60 0.25 -31.24 16 22 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 23 C 0.01 0.78 5.47 84.66 0.46 1.24 16 24 N -0.94 -58.04 13.96 21.45 0.30 -57.74 16 25 Si 0.96 40.44 27.47 68.60 1.88 42.32 16 26 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 27 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 28 H -0.24 -9.07 6.54 99.48 0.65 -8.42 16 29 N -0.35 -16.24 12.42 -54.44 -0.68 -16.92 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.39 2.99 9.05 -74.05 -0.67 2.32 16 34 H 0.06 1.29 7.45 -2.39 -0.02 1.27 16 35 H 0.09 2.20 6.08 -2.39 -0.01 2.19 16 36 H 0.14 2.04 5.97 -2.38 -0.01 2.03 16 37 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.10 1.34 5.66 -2.38 -0.01 1.33 16 42 H 0.41 10.86 6.34 -92.70 -0.59 10.27 16 43 H 0.17 5.99 5.93 -2.91 -0.02 5.97 16 44 H 0.21 5.49 8.06 -2.91 -0.02 5.47 16 45 H 0.05 2.02 7.20 -2.39 -0.02 2.00 16 46 H 0.08 3.19 7.50 -2.39 -0.02 3.18 16 47 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 Total: -1.00 -76.72 371.20 -0.04 -76.76 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: -0.30 Total: 32.63 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 7.34 Total: 12.05 kcal Atomic # 7 Polarization: -122.46 SS G_CDS: -5.84 Total: -128.30 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -3.12 Total: -35.46 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 1.88 Total: 42.32 kcal Total: -76.72 -0.04 -76.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343439804.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.914 kcal (2) G-P(sol) polarization free energy of solvation -76.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds