Wall clock time and date at job start Tue Mar 31 2020 22:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47244 * 2 1 4 4 O 1.42902 * 109.46844 * 120.00159 * 2 1 3 5 5 C 1.53003 * 109.47132 * 239.99669 * 2 1 3 6 6 C 1.52989 * 109.47129 * 176.03659 * 5 2 1 7 7 H 1.09002 * 109.68443 * 59.48585 * 6 5 2 8 8 C 1.53296 * 109.68318 * 298.92942 * 6 5 2 9 9 O 1.42964 * 109.22298 * 187.97241 * 8 6 5 10 10 C 1.42965 * 114.16531 * 62.58564 * 9 8 6 11 11 C 1.53717 * 109.14246 * 297.28535 * 10 9 8 12 12 N 1.47146 * 108.16316 * 52.54187 * 11 10 9 13 13 C 1.34775 * 120.98558 * 129.43053 * 12 11 10 14 14 O 1.21587 * 120.00235 * 185.09768 * 13 12 11 15 15 N 1.34782 * 119.99762 * 5.09524 * 13 12 11 16 16 C 1.40189 * 119.99822 * 184.95285 * 15 13 12 17 17 C 1.40402 * 125.97345 * 354.12119 * 16 15 13 18 18 C 1.35251 * 107.86695 * 179.70280 * 17 16 15 19 19 N 1.34960 * 107.85701 * 0.26605 * 18 17 16 20 20 C 1.46502 * 125.97416 * 180.02562 * 19 18 17 21 21 C 1.50705 * 109.47048 * 124.99743 * 20 19 18 22 22 H 1.07998 * 119.99786 * 0.02562 * 21 20 19 23 23 C 1.37875 * 119.99721 * 180.02562 * 21 20 19 24 24 N 1.31515 * 119.99794 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00376 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47095 * 90.00196 * 25 23 21 27 27 H 1.48504 * 109.47598 * 210.00208 * 25 23 21 28 28 H 1.48501 * 109.47196 * 330.00484 * 25 23 21 29 29 N 1.31214 * 125.97412 * 174.29537 * 16 15 13 30 30 H 1.09003 * 109.47590 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47352 * 300.00333 * 1 2 3 32 32 H 1.09002 * 109.46929 * 60.00088 * 1 2 3 33 33 H 0.96699 * 113.99907 * 64.94155 * 4 2 1 34 34 H 1.08994 * 109.46736 * 56.03312 * 5 2 1 35 35 H 1.08999 * 109.47021 * 296.03896 * 5 2 1 36 36 H 1.08997 * 109.51546 * 307.90214 * 8 6 5 37 37 H 1.09008 * 109.50907 * 68.00278 * 8 6 5 38 38 H 1.08992 * 109.51314 * 57.33814 * 10 9 8 39 39 H 1.08999 * 109.50876 * 177.44280 * 10 9 8 40 40 H 1.08994 * 109.83728 * 292.85488 * 11 10 9 41 41 H 1.09008 * 109.74071 * 172.16380 * 11 10 9 42 42 H 0.97000 * 120.00032 * 4.95297 * 15 13 12 43 43 H 1.08000 * 126.06811 * 359.96575 * 17 16 15 44 44 H 1.07995 * 126.07111 * 180.26069 * 18 17 16 45 45 H 1.08996 * 109.47129 * 244.99337 * 20 19 18 46 46 H 1.08994 * 109.47478 * 5.00004 * 20 19 18 47 47 H 0.97002 * 120.00264 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2492 6 6 3.5667 -0.6356 -1.3001 7 1 3.9903 -1.0978 -0.4084 8 6 3.9990 0.8332 -1.3762 9 8 5.4080 0.8976 -1.6100 10 6 5.8223 0.3205 -2.8506 11 6 5.4846 -1.1791 -2.8468 12 7 4.0623 -1.3280 -2.5002 13 6 3.2391 -2.0810 -3.2563 14 8 2.0494 -2.1178 -3.0081 15 7 3.7346 -2.7932 -4.2877 16 6 2.8666 -3.4934 -5.1372 17 6 1.4804 -3.6351 -4.9651 18 6 1.0073 -4.3715 -5.9962 19 7 2.0511 -4.6910 -6.7897 20 6 1.9856 -5.4821 -8.0211 21 6 2.5979 -4.6995 -9.1541 22 1 2.9965 -3.7119 -8.9748 23 6 2.6493 -5.2445 -10.4196 24 7 3.1832 -4.5614 -11.4085 25 14 1.9606 -6.9529 -10.7295 26 1 0.5270 -6.8485 -11.1024 27 1 2.7140 -7.5973 -11.8352 28 1 2.0932 -7.7712 -9.4974 29 7 3.2081 -4.1335 -6.2306 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.7846 -1.6145 1.1958 34 1 1.6198 -0.2502 -2.1377 35 1 1.7358 -1.7674 -1.2144 36 1 3.4715 1.3262 -2.1927 37 1 3.7621 1.3316 -0.4361 38 1 5.3015 0.8116 -3.6725 39 1 6.8977 0.4508 -2.9715 40 1 6.0984 -1.6946 -2.1083 41 1 5.6675 -1.6002 -3.8355 42 1 4.6918 -2.8214 -4.4422 43 1 0.8950 -3.2250 -4.1554 44 1 -0.0228 -4.6538 -6.1560 45 1 2.5350 -6.4135 -7.8842 46 1 0.9446 -5.7052 -8.2546 47 1 3.2197 -4.9448 -12.2987 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343439818.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:48 Heat of formation + Delta-G solvation = -10.271665 kcal Electronic energy + Delta-G solvation = -30043.799436 eV Core-core repulsion = 25844.162900 eV Total energy + Delta-G solvation = -4199.636536 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.27601 -40.33348 -38.64796 -37.94460 -35.19383 -35.01235 -33.51620 -32.82486 -31.21028 -30.88711 -29.43955 -28.55754 -27.06566 -26.47264 -23.95583 -23.22196 -22.45650 -21.53813 -21.10231 -20.06240 -19.37041 -18.05787 -17.14091 -16.92182 -16.68843 -16.52999 -16.25175 -15.97021 -15.67000 -15.28724 -15.16157 -14.94391 -14.51559 -14.31413 -14.00198 -13.73676 -13.44964 -13.29530 -13.05353 -12.76717 -12.55848 -12.35415 -12.31364 -12.19929 -11.92341 -11.88878 -11.39531 -11.26797 -11.15393 -11.09625 -10.76382 -10.65796 -10.49113 -10.25519 -10.04357 -9.98010 -9.54880 -9.19996 -8.79362 -8.74709 -8.21301 -7.52167 -6.25935 -4.28307 2.13515 2.52802 2.96720 3.12316 3.17307 3.20589 3.26625 3.43656 3.71558 3.93621 4.14160 4.20718 4.34440 4.49692 4.59652 4.68692 4.79121 4.81306 4.88473 4.94068 5.01948 5.15527 5.22130 5.32888 5.35189 5.41544 5.45766 5.55015 5.62247 5.66609 5.87140 5.92230 6.04549 6.11405 6.31826 6.40377 6.41640 6.55595 6.67648 6.74300 6.78601 7.24518 7.38148 7.39863 7.73015 7.79934 8.31180 8.46243 8.54869 8.83651 9.29052 10.86791 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018038 B = 0.002512 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.871227 B =11145.110030 C =12240.243458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.090 3.910 3 H 0.094 0.906 4 O -0.567 6.567 5 C -0.142 4.142 6 C 0.137 3.863 7 H 0.086 0.914 8 C 0.048 3.952 9 O -0.378 6.378 10 C 0.048 3.952 11 C 0.072 3.928 12 N -0.629 5.629 13 C 0.719 3.281 14 O -0.559 6.559 15 N -0.644 5.644 16 C 0.277 3.723 17 C -0.281 4.281 18 C 0.050 3.950 19 N -0.320 5.320 20 C 0.232 3.768 21 C -0.535 4.535 22 H 0.085 0.915 23 C 0.076 3.924 24 N -0.888 5.888 25 Si 0.873 3.127 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.264 1.264 29 N -0.300 5.300 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.375 0.625 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.108 0.892 38 H 0.059 0.941 39 H 0.108 0.892 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.405 0.595 43 H 0.162 0.838 44 H 0.168 0.832 45 H 0.042 0.958 46 H 0.049 0.951 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.079 8.318 22.399 23.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.031 3.969 3 H 0.111 0.889 4 O -0.373 6.373 5 C -0.179 4.179 6 C 0.034 3.966 7 H 0.104 0.896 8 C -0.029 4.029 9 O -0.296 6.296 10 C -0.030 4.030 11 C -0.051 4.051 12 N -0.369 5.369 13 C 0.421 3.579 14 O -0.435 6.435 15 N -0.296 5.296 16 C 0.023 3.977 17 C -0.313 4.313 18 C -0.099 4.099 19 N -0.101 5.101 20 C 0.113 3.887 21 C -0.573 4.573 22 H 0.103 0.897 23 C -0.128 4.128 24 N -0.525 5.525 25 Si 0.699 3.301 26 H -0.197 1.197 27 H -0.205 1.205 28 H -0.189 1.189 29 N -0.131 5.131 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.223 0.777 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.077 0.923 39 H 0.126 0.874 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.242 0.758 43 H 0.180 0.820 44 H 0.185 0.815 45 H 0.059 0.941 46 H 0.067 0.933 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.564 8.577 21.736 23.374 hybrid contribution -0.765 -1.321 -0.543 1.621 sum -0.202 7.255 21.193 22.401 Atomic orbital electron populations 1.22410 0.96180 1.02803 1.02398 1.22192 0.93352 0.96530 0.84823 0.88860 1.86541 1.80757 1.26764 1.43220 1.22888 0.92460 1.04483 0.98108 1.21770 0.96067 0.92449 0.86308 0.89617 1.23199 0.81888 0.95377 1.02481 1.87976 1.22965 1.80052 1.38572 1.23054 1.01374 0.91599 0.86988 1.22510 0.82034 0.98349 1.02226 1.47328 1.09197 1.51765 1.28567 1.15568 0.84805 0.78486 0.79036 1.90864 1.13572 1.68469 1.70605 1.41687 1.09442 1.49934 1.28531 1.18796 0.89900 0.97478 0.91523 1.21508 0.93033 1.11927 1.04809 1.22552 0.94722 1.00138 0.92473 1.48592 1.02650 1.39192 1.19707 1.20039 0.98387 0.90905 0.79334 1.21106 1.40467 1.04622 0.91068 0.89684 1.24834 0.94689 0.97570 0.95675 1.69872 1.43771 1.37726 1.01144 0.86904 0.79691 0.84610 0.78885 1.19702 1.20528 1.18854 1.77390 1.08673 1.18012 1.08982 0.92111 0.92142 0.91534 0.77731 0.89537 0.87768 0.92487 0.87416 0.92254 0.87370 0.90029 0.89139 0.75815 0.82039 0.81462 0.94060 0.93336 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 9.56 37.16 0.36 -1.01 16 2 C 0.09 0.72 3.39 -26.73 -0.09 0.63 16 3 H 0.09 0.69 6.46 -51.93 -0.34 0.35 16 4 O -0.57 -4.79 12.84 -35.23 -0.45 -5.24 16 5 C -0.14 -1.36 2.81 -26.74 -0.08 -1.44 16 6 C 0.14 1.31 3.08 -67.42 -0.21 1.10 16 7 H 0.09 0.83 7.79 -51.93 -0.40 0.42 16 8 C 0.05 0.42 5.72 37.31 0.21 0.63 16 9 O -0.38 -3.65 10.74 -35.23 -0.38 -4.03 16 10 C 0.05 0.38 7.00 37.53 0.26 0.64 16 11 C 0.07 0.60 6.55 -3.32 -0.02 0.57 16 12 N -0.63 -6.74 3.01 -170.18 -0.51 -7.25 16 13 C 0.72 10.08 8.20 -86.91 -0.71 9.37 16 14 O -0.56 -8.73 9.05 5.29 0.05 -8.68 16 15 N -0.64 -9.79 5.31 -15.51 -0.08 -9.88 16 16 C 0.28 5.38 8.10 -154.36 -1.25 4.13 16 17 C -0.28 -5.27 9.61 -39.83 -0.38 -5.65 16 18 C 0.05 0.95 11.44 -17.24 -0.20 0.75 16 19 N -0.32 -7.12 3.67 -62.56 -0.23 -7.34 16 20 C 0.23 5.43 5.33 -5.19 -0.03 5.41 16 21 C -0.53 -14.94 9.79 -34.44 -0.34 -15.28 16 22 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 23 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 24 N -0.89 -26.42 13.96 55.43 0.77 -25.65 16 25 Si 0.87 19.93 27.47 -169.99 -4.67 15.26 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 29 N -0.30 -6.74 12.42 31.44 0.39 -6.35 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.38 2.21 9.03 45.56 0.41 2.62 16 34 H 0.09 0.99 7.28 -51.93 -0.38 0.61 16 35 H 0.10 1.20 6.26 -51.93 -0.33 0.87 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.11 0.80 6.83 -51.92 -0.35 0.45 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.68 5.88 -51.92 -0.31 0.38 16 42 H 0.40 5.19 6.49 -40.82 -0.26 4.93 16 43 H 0.16 2.89 5.94 -52.49 -0.31 2.58 16 44 H 0.17 2.47 8.06 -52.49 -0.42 2.05 16 45 H 0.04 0.96 7.20 -51.93 -0.37 0.59 16 46 H 0.05 1.03 7.50 -51.93 -0.39 0.64 16 47 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 373.32 15.07 5.63 5.63 Total: -1.00 -34.08 373.32 -8.06 -42.13 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -6.00 Total: 9.54 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -2.57 Total: 1.87 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.34 Total: -56.47 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.78 Total: -17.96 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.67 Total: 15.26 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.08 -8.06 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343439818.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.863 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds