Wall clock time and date at job start Tue Mar 31 2020 22:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47244 * 2 1 4 4 O 1.42902 * 109.46844 * 120.00159 * 2 1 3 5 5 C 1.53003 * 109.47132 * 239.99669 * 2 1 3 6 6 C 1.52989 * 109.47129 * 176.03659 * 5 2 1 7 7 H 1.09002 * 109.68443 * 59.48585 * 6 5 2 8 8 C 1.53296 * 109.68318 * 298.92942 * 6 5 2 9 9 O 1.42964 * 109.22298 * 187.97241 * 8 6 5 10 10 C 1.42965 * 114.16531 * 62.58564 * 9 8 6 11 11 C 1.53717 * 109.14246 * 297.28535 * 10 9 8 12 12 N 1.47146 * 108.16316 * 52.54187 * 11 10 9 13 13 C 1.34775 * 120.98558 * 129.43053 * 12 11 10 14 14 O 1.21587 * 120.00235 * 185.09768 * 13 12 11 15 15 N 1.34782 * 119.99762 * 5.09524 * 13 12 11 16 16 C 1.40189 * 119.99822 * 184.95285 * 15 13 12 17 17 C 1.40402 * 125.97345 * 354.12119 * 16 15 13 18 18 C 1.35251 * 107.86695 * 179.70280 * 17 16 15 19 19 N 1.34960 * 107.85701 * 0.26605 * 18 17 16 20 20 C 1.46502 * 125.97416 * 180.02562 * 19 18 17 21 21 C 1.50705 * 109.47048 * 124.99743 * 20 19 18 22 22 H 1.07998 * 119.99786 * 0.02562 * 21 20 19 23 23 C 1.37875 * 119.99721 * 180.02562 * 21 20 19 24 24 N 1.31515 * 119.99794 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00376 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47095 * 90.00196 * 25 23 21 27 27 H 1.48504 * 109.47598 * 210.00208 * 25 23 21 28 28 H 1.48501 * 109.47196 * 330.00484 * 25 23 21 29 29 N 1.31214 * 125.97412 * 174.29537 * 16 15 13 30 30 H 1.09003 * 109.47590 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47352 * 300.00333 * 1 2 3 32 32 H 1.09002 * 109.46929 * 60.00088 * 1 2 3 33 33 H 0.96699 * 113.99907 * 64.94155 * 4 2 1 34 34 H 1.08994 * 109.46736 * 56.03312 * 5 2 1 35 35 H 1.08999 * 109.47021 * 296.03896 * 5 2 1 36 36 H 1.08997 * 109.51546 * 307.90214 * 8 6 5 37 37 H 1.09008 * 109.50907 * 68.00278 * 8 6 5 38 38 H 1.08992 * 109.51314 * 57.33814 * 10 9 8 39 39 H 1.08999 * 109.50876 * 177.44280 * 10 9 8 40 40 H 1.08994 * 109.83728 * 292.85488 * 11 10 9 41 41 H 1.09008 * 109.74071 * 172.16380 * 11 10 9 42 42 H 0.97000 * 120.00032 * 4.95297 * 15 13 12 43 43 H 1.08000 * 126.06811 * 359.96575 * 17 16 15 44 44 H 1.07995 * 126.07111 * 180.26069 * 18 17 16 45 45 H 1.08996 * 109.47129 * 244.99337 * 20 19 18 46 46 H 1.08994 * 109.47478 * 5.00004 * 20 19 18 47 47 H 0.97002 * 120.00264 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2492 6 6 3.5667 -0.6356 -1.3001 7 1 3.9903 -1.0978 -0.4084 8 6 3.9990 0.8332 -1.3762 9 8 5.4080 0.8976 -1.6100 10 6 5.8223 0.3205 -2.8506 11 6 5.4846 -1.1791 -2.8468 12 7 4.0623 -1.3280 -2.5002 13 6 3.2391 -2.0810 -3.2563 14 8 2.0494 -2.1178 -3.0081 15 7 3.7346 -2.7932 -4.2877 16 6 2.8666 -3.4934 -5.1372 17 6 1.4804 -3.6351 -4.9651 18 6 1.0073 -4.3715 -5.9962 19 7 2.0511 -4.6910 -6.7897 20 6 1.9856 -5.4821 -8.0211 21 6 2.5979 -4.6995 -9.1541 22 1 2.9965 -3.7119 -8.9748 23 6 2.6493 -5.2445 -10.4196 24 7 3.1832 -4.5614 -11.4085 25 14 1.9606 -6.9529 -10.7295 26 1 0.5270 -6.8485 -11.1024 27 1 2.7140 -7.5973 -11.8352 28 1 2.0932 -7.7712 -9.4974 29 7 3.2081 -4.1335 -6.2306 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.7846 -1.6145 1.1958 34 1 1.6198 -0.2502 -2.1377 35 1 1.7358 -1.7674 -1.2144 36 1 3.4715 1.3262 -2.1927 37 1 3.7621 1.3316 -0.4361 38 1 5.3015 0.8116 -3.6725 39 1 6.8977 0.4508 -2.9715 40 1 6.0984 -1.6946 -2.1083 41 1 5.6675 -1.6002 -3.8355 42 1 4.6918 -2.8214 -4.4422 43 1 0.8950 -3.2250 -4.1554 44 1 -0.0228 -4.6538 -6.1560 45 1 2.5350 -6.4135 -7.8842 46 1 0.9446 -5.7052 -8.2546 47 1 3.2197 -4.9448 -12.2987 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343439818.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:47 Heat of formation + Delta-G solvation = -36.302980 kcal Electronic energy + Delta-G solvation = -30044.928239 eV Core-core repulsion = 25844.162900 eV Total energy + Delta-G solvation = -4200.765339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.44004 -41.62011 -39.60600 -38.62866 -36.44431 -35.94956 -35.26855 -33.89867 -32.86330 -31.56447 -30.96232 -29.54856 -28.68986 -27.23055 -25.04770 -24.31448 -23.77960 -22.38214 -22.35272 -21.44841 -20.56343 -19.10718 -19.04157 -18.16943 -17.65097 -17.47401 -17.15614 -16.99359 -16.67170 -16.34997 -16.09699 -15.98799 -15.88037 -15.45822 -15.20880 -14.88623 -14.64731 -14.44382 -14.28528 -14.00304 -13.85127 -13.76052 -13.44880 -13.03409 -12.93707 -12.63518 -12.60649 -12.51519 -12.31814 -12.11709 -12.02924 -11.83136 -11.79085 -11.60496 -11.36832 -11.26636 -10.93296 -10.87139 -10.22676 -9.77704 -9.61042 -9.02905 -8.37802 -6.47987 0.98189 1.08622 1.36543 1.39527 1.49213 1.66497 1.92775 2.28819 2.35653 2.71195 2.77961 2.95034 3.50223 3.64002 3.73390 3.87186 3.94844 4.01965 4.08546 4.11537 4.17233 4.22228 4.28200 4.48773 4.55132 4.61324 4.63391 4.72885 4.77793 4.78775 4.85104 4.92622 4.93364 4.94034 5.03775 5.24223 5.26425 5.30162 5.37968 5.55266 5.64671 5.91709 6.02305 6.05369 6.41299 6.52763 6.59535 6.85466 7.06645 7.15249 7.33916 8.79338 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018038 B = 0.002512 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.871227 B =11145.110030 C =12240.243458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.098 3.902 3 H 0.103 0.897 4 O -0.576 6.576 5 C -0.129 4.129 6 C 0.137 3.863 7 H 0.090 0.910 8 C 0.051 3.949 9 O -0.388 6.388 10 C 0.047 3.953 11 C 0.067 3.933 12 N -0.623 5.623 13 C 0.715 3.285 14 O -0.577 6.577 15 N -0.641 5.641 16 C 0.284 3.716 17 C -0.289 4.289 18 C 0.059 3.941 19 N -0.345 5.345 20 C 0.240 3.760 21 C -0.546 4.546 22 H 0.026 0.974 23 C 0.014 3.986 24 N -0.943 5.943 25 Si 0.955 3.045 26 H -0.253 1.253 27 H -0.281 1.281 28 H -0.239 1.239 29 N -0.351 5.351 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.386 0.614 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.123 0.877 38 H 0.052 0.948 39 H 0.133 0.867 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.414 0.586 43 H 0.171 0.829 44 H 0.210 0.790 45 H 0.045 0.955 46 H 0.082 0.918 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.818 7.349 24.051 25.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.039 3.961 3 H 0.121 0.879 4 O -0.383 6.383 5 C -0.166 4.166 6 C 0.034 3.966 7 H 0.108 0.892 8 C -0.026 4.026 9 O -0.306 6.306 10 C -0.030 4.030 11 C -0.055 4.055 12 N -0.361 5.361 13 C 0.417 3.583 14 O -0.454 6.454 15 N -0.295 5.295 16 C 0.028 3.972 17 C -0.320 4.320 18 C -0.089 4.089 19 N -0.127 5.127 20 C 0.120 3.880 21 C -0.584 4.584 22 H 0.044 0.956 23 C -0.185 4.185 24 N -0.582 5.582 25 Si 0.776 3.224 26 H -0.177 1.177 27 H -0.207 1.207 28 H -0.162 1.162 29 N -0.182 5.182 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.235 0.765 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.141 0.859 38 H 0.070 0.930 39 H 0.151 0.849 40 H 0.117 0.883 41 H 0.113 0.887 42 H 0.253 0.747 43 H 0.188 0.812 44 H 0.226 0.774 45 H 0.063 0.937 46 H 0.099 0.901 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.309 7.640 23.450 24.665 hybrid contribution -0.418 -0.855 -0.944 1.340 sum -0.727 6.785 22.506 23.518 Atomic orbital electron populations 1.22390 0.95878 1.02700 1.02632 1.22116 0.93516 0.96636 0.83815 0.87929 1.86518 1.80899 1.27782 1.43120 1.22664 0.92496 1.03283 0.98205 1.21896 0.95978 0.92989 0.85749 0.89168 1.23221 0.81629 0.94586 1.03159 1.87967 1.23227 1.80211 1.39234 1.23180 1.02775 0.90865 0.86186 1.22743 0.80618 0.99093 1.03073 1.47413 1.09945 1.50564 1.28156 1.15740 0.84995 0.78661 0.78946 1.90854 1.14508 1.69047 1.71034 1.41753 1.09606 1.49787 1.28345 1.19125 0.90952 0.96252 0.90845 1.21724 0.92867 1.12155 1.05260 1.23249 0.95732 0.98624 0.91246 1.48477 1.03524 1.40575 1.20164 1.19869 0.99564 0.90253 0.78306 1.21235 1.40838 1.02971 0.93394 0.95587 1.25923 0.94733 1.02908 0.94902 1.70051 1.45709 1.40474 1.01939 0.85617 0.79383 0.77901 0.79484 1.17745 1.20688 1.16202 1.77303 1.09969 1.20254 1.10695 0.92415 0.91492 0.91676 0.76540 0.91466 0.89608 0.92869 0.85899 0.93001 0.84907 0.88332 0.88669 0.74746 0.81162 0.77379 0.93722 0.90079 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 9.56 71.98 0.69 -1.83 16 2 C 0.10 1.45 3.39 30.60 0.10 1.55 16 3 H 0.10 1.33 6.46 -2.39 -0.02 1.31 16 4 O -0.58 -8.82 12.84 -148.98 -1.91 -10.73 16 5 C -0.13 -2.40 2.81 30.59 0.09 -2.32 16 6 C 0.14 2.44 3.08 44.96 0.14 2.58 16 7 H 0.09 1.59 7.79 -2.39 -0.02 1.57 16 8 C 0.05 0.82 5.72 72.08 0.41 1.24 16 9 O -0.39 -6.82 10.74 -148.98 -1.60 -8.42 16 10 C 0.05 0.67 7.00 72.22 0.51 1.18 16 11 C 0.07 1.02 6.55 86.50 0.57 1.58 16 12 N -0.62 -12.82 3.01 -810.58 -2.44 -15.26 16 13 C 0.71 19.84 8.20 179.05 1.47 21.30 16 14 O -0.58 -17.96 9.05 -3.99 -0.04 -18.00 16 15 N -0.64 -19.56 5.31 -321.23 -1.71 -21.27 16 16 C 0.28 11.10 8.10 133.31 1.08 12.18 16 17 C -0.29 -10.63 9.61 22.11 0.21 -10.42 16 18 C 0.06 2.14 11.44 83.52 0.96 3.09 16 19 N -0.35 -15.29 3.67 -351.84 -1.29 -16.58 16 20 C 0.24 11.00 5.33 85.63 0.46 11.45 16 21 C -0.55 -31.36 9.79 25.60 0.25 -31.11 16 22 H 0.03 1.75 8.06 -2.91 -0.02 1.72 16 23 C 0.01 0.79 5.47 84.65 0.46 1.26 16 24 N -0.94 -57.88 13.96 21.45 0.30 -57.58 16 25 Si 0.96 40.38 27.47 68.60 1.88 42.26 16 26 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 27 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 28 H -0.24 -9.08 6.54 99.48 0.65 -8.43 16 29 N -0.35 -16.15 12.42 -54.44 -0.68 -16.82 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.39 4.05 9.03 -74.06 -0.67 3.38 16 34 H 0.07 1.54 7.28 -2.39 -0.02 1.52 16 35 H 0.09 1.95 6.26 -2.39 -0.01 1.94 16 36 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.12 1.58 6.83 -2.38 -0.02 1.57 16 38 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.10 1.35 5.88 -2.38 -0.01 1.34 16 42 H 0.41 10.67 6.49 -92.71 -0.60 10.07 16 43 H 0.17 5.95 5.94 -2.91 -0.02 5.94 16 44 H 0.21 5.47 8.06 -2.91 -0.02 5.45 16 45 H 0.04 2.01 7.20 -2.39 -0.02 1.99 16 46 H 0.08 3.18 7.50 -2.39 -0.02 3.17 16 47 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -76.88 373.32 -0.40 -77.28 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: -0.31 Total: 33.38 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 7.39 Total: 11.74 kcal Atomic # 7 Polarization: -121.69 SS G_CDS: -5.82 Total: -127.51 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -3.55 Total: -37.15 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 1.88 Total: 42.26 kcal Total: -76.88 -0.40 -77.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343439818.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.981 kcal (2) G-P(sol) polarization free energy of solvation -76.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds