Wall clock time and date at job start Tue Mar 31 2020 22:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.50519 * 2 1 4 4 C 1.53095 * 109.50730 * 239.91374 * 2 1 3 5 5 N 1.47018 * 109.29409 * 183.18928 * 4 2 1 6 6 C 1.46899 * 111.00176 * 182.41234 * 5 4 2 7 7 C 1.50700 * 109.47189 * 170.00110 * 6 5 4 8 8 O 1.21280 * 119.99916 * 0.02562 * 7 6 5 9 9 N 1.34769 * 119.99845 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00087 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47128 * 89.99945 * 10 9 7 12 12 H 1.08000 * 120.00108 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00038 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99923 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00080 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47236 * 60.00268 * 15 13 11 17 17 H 1.48499 * 109.47437 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47156 * 300.00394 * 15 13 11 19 19 C 1.46508 * 120.00405 * 359.97438 * 9 7 6 20 20 C 1.52997 * 109.46705 * 89.99776 * 19 9 7 21 21 C 1.47202 * 109.46833 * 180.02562 * 20 19 9 22 22 N 8.42589 * 106.71730 * 249.93594 * 2 1 3 23 23 C 1.47107 * 110.70202 * 58.59593 * 5 4 2 24 24 C 1.53104 * 109.27905 * 301.41042 * 23 5 4 25 25 H 1.08994 * 109.50501 * 176.78179 * 24 23 5 26 26 C 1.50694 * 109.54326 * 296.89426 * 24 23 5 27 27 N 1.34772 * 119.99966 * 294.80473 * 26 24 23 28 28 O 1.21285 * 120.00112 * 114.80568 * 26 24 23 29 29 O 1.43013 * 109.51073 * 120.12785 * 2 1 3 30 30 H 1.09006 * 109.46504 * 180.09100 * 1 2 3 31 31 H 1.09003 * 109.47189 * 300.08380 * 1 2 3 32 32 H 1.08997 * 109.47402 * 60.09341 * 1 2 3 33 33 H 1.09002 * 109.50646 * 303.14826 * 4 2 1 34 34 H 1.09003 * 109.50955 * 63.23380 * 4 2 1 35 35 H 1.08999 * 109.46967 * 290.00766 * 6 5 4 36 36 H 1.08997 * 109.47000 * 50.00171 * 6 5 4 37 37 H 1.08999 * 109.46962 * 210.00129 * 10 9 7 38 38 H 1.08998 * 109.46970 * 330.00190 * 10 9 7 39 39 H 0.97001 * 119.99863 * 179.97438 * 14 13 11 40 40 H 1.08991 * 109.47169 * 210.00158 * 19 9 7 41 41 H 1.08996 * 109.46702 * 330.00190 * 19 9 7 42 42 H 1.08991 * 109.47619 * 300.00106 * 20 19 9 43 43 H 1.08996 * 109.47203 * 60.00720 * 20 19 9 44 44 H 1.08997 * 109.49376 * 181.46945 * 23 5 4 45 45 H 1.08994 * 109.49453 * 61.35141 * 23 5 4 46 46 H 0.97002 * 120.00087 * 0.02562 * 27 26 24 47 47 H 0.97001 * 120.00419 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2486 5 7 3.5094 -0.7878 -1.2058 6 6 4.0439 -1.4255 -2.4165 7 6 5.5408 -1.2557 -2.4545 8 8 6.1067 -0.6625 -1.5608 9 7 6.2506 -1.7632 -3.4815 10 6 7.7059 -1.5988 -3.5182 11 6 8.3608 -2.7627 -2.8201 12 1 7.7537 -3.5468 -2.3923 13 6 9.7350 -2.8267 -2.7276 14 7 10.4742 -1.8716 -3.2481 15 14 10.5467 -4.2691 -1.8616 16 1 10.1742 -5.5320 -2.5483 17 1 12.0218 -4.1019 -1.8978 18 1 10.0892 -4.3199 -0.4497 19 6 5.5672 -2.4804 -4.5609 20 6 5.1699 -1.4914 -5.6586 21 6 4.4826 -2.2118 -6.7427 22 7 3.9537 -2.7685 -7.5800 23 6 3.9641 -1.4883 0.0052 24 6 3.4335 -0.7571 1.2414 25 1 3.7201 -1.3047 2.1391 26 6 4.0140 0.6326 1.2928 27 7 5.3393 0.8033 1.4683 28 8 3.2885 1.5976 1.1763 29 8 2.0076 -0.6766 1.1659 30 1 -0.3632 -1.0278 0.0016 31 1 -0.3634 0.5151 0.8893 32 1 -0.3634 0.5124 -0.8908 33 1 1.6332 -1.7338 -1.2766 34 1 1.7266 -0.1791 -2.1391 35 1 3.7987 -2.4875 -2.4062 36 1 3.6029 -0.9593 -3.2975 37 1 8.0413 -1.5613 -4.5547 38 1 7.9797 -0.6720 -3.0140 39 1 11.4410 -1.9165 -3.1827 40 1 6.2354 -3.2348 -4.9759 41 1 4.6734 -2.9639 -4.1667 42 1 4.5017 -0.7370 -5.2435 43 1 6.0637 -1.0079 -6.0528 44 1 5.0537 -1.5018 0.0301 45 1 3.5868 -2.5108 -0.0027 46 1 5.9196 0.0316 1.5612 47 1 5.7130 1.6978 1.5011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347084354.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:54 Heat of formation + Delta-G solvation = -75.148789 kcal Electronic energy + Delta-G solvation = -30804.496412 eV Core-core repulsion = 26602.046592 eV Total energy + Delta-G solvation = -4202.449820 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.72008 -39.34235 -37.93309 -36.92473 -35.72042 -35.07651 -33.76792 -32.96154 -32.58969 -30.90180 -29.73099 -28.13589 -26.76882 -25.20169 -24.07259 -23.41019 -22.09458 -21.73227 -19.81148 -18.61725 -17.69637 -17.42689 -16.90220 -16.65705 -16.49663 -16.13863 -15.92146 -15.61629 -15.39893 -14.88150 -14.65170 -14.51902 -14.35163 -14.17082 -13.72839 -13.59820 -13.50931 -12.98505 -12.69501 -12.58972 -12.49438 -12.47482 -12.25251 -12.01981 -11.94940 -11.82380 -11.71883 -11.35691 -11.28164 -11.06395 -10.91095 -10.88861 -10.68354 -10.27467 -10.17792 -9.79766 -9.44165 -9.24076 -8.89526 -8.54386 -8.31052 -7.90828 -6.15911 -4.21189 2.67883 2.76365 2.76572 3.20875 3.23403 3.29180 3.29969 3.35301 3.55647 3.72516 3.82613 4.18770 4.34392 4.66825 4.79873 4.84771 4.90571 4.96103 5.04998 5.08273 5.18596 5.21305 5.23754 5.30981 5.35773 5.41512 5.47143 5.48317 5.55660 5.65891 5.76616 5.86798 5.99863 6.01419 6.19079 6.69201 6.81148 6.94106 6.99551 7.06288 7.29367 7.36019 7.52804 7.53542 7.79585 8.09669 8.19023 8.43373 8.76371 8.91884 9.44628 10.91954 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009100 B = 0.004060 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3076.228467 B = 6894.292796 C = 9159.601889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.069 3.931 3 H 0.106 0.894 4 C 0.024 3.976 5 N -0.516 5.516 6 C 0.032 3.968 7 C 0.509 3.491 8 O -0.514 6.514 9 N -0.597 5.597 10 C 0.247 3.753 11 C -0.530 4.530 12 H 0.056 0.944 13 C 0.064 3.936 14 N -0.892 5.892 15 Si 0.896 3.104 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.277 1.277 19 C 0.117 3.883 20 C -0.051 4.051 21 C 0.216 3.784 22 N -0.445 5.445 23 C 0.022 3.978 24 C 0.078 3.922 25 H 0.128 0.872 26 C 0.517 3.483 27 N -0.838 5.838 28 O -0.545 6.545 29 O -0.359 6.359 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.099 0.901 37 H 0.033 0.967 38 H 0.047 0.953 39 H 0.265 0.735 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.106 0.894 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.049 0.951 46 H 0.404 0.596 47 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.271 1.644 4.551 15.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.011 3.989 3 H 0.124 0.876 4 C -0.104 4.104 5 N -0.240 5.240 6 C -0.099 4.099 7 C 0.295 3.705 8 O -0.389 6.389 9 N -0.330 5.330 10 C 0.128 3.872 11 C -0.569 4.569 12 H 0.075 0.925 13 C -0.139 4.139 14 N -0.531 5.531 15 Si 0.724 3.276 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.009 4.009 20 C -0.092 4.092 21 C -0.102 4.102 22 N -0.122 5.122 23 C -0.106 4.106 24 C 0.016 3.984 25 H 0.146 0.854 26 C 0.301 3.699 27 N -0.401 5.401 28 O -0.423 6.423 29 O -0.277 6.277 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.117 0.883 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.113 0.887 41 H 0.091 0.909 42 H 0.124 0.876 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.067 0.933 46 H 0.232 0.768 47 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -15.108 2.089 3.823 15.724 hybrid contribution 1.173 -1.485 0.357 1.926 sum -13.935 0.604 4.180 14.561 Atomic orbital electron populations 1.21704 0.93061 1.02364 1.02622 1.22608 0.94513 0.98705 0.83044 0.87618 1.22895 0.87439 1.00037 1.00054 1.61844 1.08235 1.52750 1.01216 1.22155 0.94992 0.98538 0.94191 1.20110 0.88037 0.79645 0.82702 1.90623 1.71455 1.40745 1.36087 1.48221 1.10044 1.54253 1.20456 1.19326 0.71744 0.98380 0.97713 1.21351 0.91422 1.07120 1.36966 0.92533 1.24904 0.97204 0.96281 0.95465 1.69907 1.05676 1.32608 1.44891 0.86599 0.78266 0.82554 0.80221 1.20291 1.21206 1.20221 1.21303 0.98362 0.93747 0.87510 1.19903 1.00753 0.98083 0.90468 1.29116 0.93247 0.93675 0.94137 1.81217 1.10388 1.09498 1.11120 1.22950 1.03864 0.95052 0.88756 1.22172 0.82818 0.93507 0.99859 0.85439 1.20978 0.82727 0.91630 0.74561 1.43743 1.08286 1.12574 1.75501 1.90602 1.59350 1.42255 1.50102 1.88017 1.17947 1.77641 1.44055 0.92361 0.91599 0.91051 0.94168 0.89641 0.92129 0.88273 0.94855 0.93499 0.92572 0.88724 0.90868 0.87595 0.86425 0.86541 0.93302 0.76763 0.76911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.57 37.16 0.36 -0.99 16 2 C 0.07 0.85 2.97 -26.68 -0.08 0.78 16 3 H 0.11 1.60 5.38 -51.93 -0.28 1.32 16 4 C 0.02 0.27 4.93 -3.71 -0.02 0.25 16 5 N -0.52 -6.78 4.13 -235.67 -0.97 -7.75 16 6 C 0.03 0.40 4.00 -4.98 -0.02 0.38 16 7 C 0.51 8.43 7.38 -10.99 -0.08 8.35 16 8 O -0.51 -10.28 13.93 5.56 0.08 -10.21 16 9 N -0.60 -9.96 2.46 -175.06 -0.43 -10.39 16 10 C 0.25 5.46 5.16 -5.19 -0.03 5.44 16 11 C -0.53 -13.24 9.39 -34.44 -0.32 -13.57 16 12 H 0.06 1.41 7.81 -52.49 -0.41 1.00 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -24.42 13.29 55.43 0.74 -23.68 16 15 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 C 0.12 1.43 5.17 -4.04 -0.02 1.41 16 20 C -0.05 -0.49 6.03 -29.52 -0.18 -0.67 16 21 C 0.22 2.49 15.43 -20.76 -0.32 2.17 16 22 N -0.44 -6.34 18.54 42.16 0.78 -5.56 16 23 C 0.02 0.28 4.68 -3.66 -0.02 0.27 16 24 C 0.08 0.97 3.72 -27.83 -0.10 0.87 16 25 H 0.13 1.23 8.14 -51.93 -0.42 0.80 16 26 C 0.52 7.34 6.89 -10.99 -0.08 7.26 16 27 N -0.84 -10.01 8.80 31.22 0.27 -9.74 16 28 O -0.54 -9.47 14.64 -14.28 -0.21 -9.68 16 29 O -0.36 -4.86 10.14 -55.06 -0.56 -5.41 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 35 H 0.06 0.67 7.38 -51.93 -0.38 0.28 16 36 H 0.10 0.99 7.08 -51.93 -0.37 0.62 16 37 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 38 H 0.05 1.20 7.42 -51.93 -0.39 0.81 16 39 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.09 1.26 8.07 -51.93 -0.42 0.84 16 41 H 0.07 0.74 6.44 -51.93 -0.33 0.40 16 42 H 0.11 0.84 7.22 -51.93 -0.37 0.46 16 43 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.12 1.70 5.60 -51.93 -0.29 1.41 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.40 4.25 8.58 -40.82 -0.35 3.90 16 47 H 0.40 4.53 8.93 -40.82 -0.36 4.16 16 LS Contribution 388.92 15.07 5.86 5.86 Total: -1.00 -33.42 388.92 -7.36 -40.78 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -6.89 Total: 7.10 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: -1.01 Total: 13.51 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.39 Total: -57.11 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.69 Total: -25.30 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.42 -7.36 -40.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347084354.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.367 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds