Wall clock time and date at job start Tue Mar 31 2020 22:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.50458 * 2 1 4 4 C 1.53102 * 109.50436 * 120.08723 * 2 1 3 5 5 N 1.47017 * 109.25743 * 176.82773 * 4 2 1 6 6 C 1.46898 * 111.00080 * 177.60345 * 5 4 2 7 7 C 1.50694 * 109.47351 * 293.63855 * 6 5 4 8 8 O 1.21286 * 120.00236 * 353.73642 * 7 6 5 9 9 N 1.34776 * 120.00237 * 173.73929 * 7 6 5 10 10 C 1.46499 * 120.00508 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47296 * 89.99511 * 10 9 7 12 12 H 1.07995 * 119.99737 * 0.02562 * 11 10 9 13 13 C 1.37871 * 119.99741 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99752 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00601 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47187 * 90.00022 * 15 13 11 17 17 H 1.48492 * 109.47762 * 210.00226 * 15 13 11 18 18 H 1.48509 * 109.46808 * 330.00555 * 15 13 11 19 19 C 1.46499 * 119.99635 * 359.97438 * 9 7 6 20 20 C 1.52996 * 109.47565 * 270.00031 * 19 9 7 21 21 C 1.47199 * 109.47517 * 180.02562 * 20 19 9 22 22 N 8.52060 * 110.84061 * 135.89491 * 2 1 3 23 23 C 1.47014 * 110.75021 * 301.38591 * 5 4 2 24 24 C 1.53088 * 109.26301 * 58.61381 * 23 5 4 25 25 H 1.09001 * 109.50758 * 63.08518 * 24 23 5 26 26 C 1.50702 * 109.50857 * 183.21899 * 24 23 5 27 27 N 1.34774 * 119.99840 * 294.78164 * 26 24 23 28 28 O 1.21273 * 120.00131 * 114.78361 * 26 24 23 29 29 O 1.43012 * 109.54414 * 239.88958 * 2 1 3 30 30 H 1.09004 * 109.46890 * 299.91422 * 1 2 3 31 31 H 1.08998 * 109.46846 * 59.91262 * 1 2 3 32 32 H 1.08998 * 109.47364 * 179.91555 * 1 2 3 33 33 H 1.08997 * 109.50846 * 56.89348 * 4 2 1 34 34 H 1.09000 * 109.50520 * 296.75695 * 4 2 1 35 35 H 1.08999 * 109.47079 * 173.63842 * 6 5 4 36 36 H 1.08999 * 109.46878 * 53.63516 * 6 5 4 37 37 H 1.09002 * 109.46877 * 330.00032 * 10 9 7 38 38 H 1.08994 * 109.47409 * 209.99914 * 10 9 7 39 39 H 0.97001 * 120.00069 * 179.97438 * 14 13 11 40 40 H 1.08993 * 109.47388 * 30.00436 * 19 9 7 41 41 H 1.09004 * 109.47270 * 150.00386 * 19 9 7 42 42 H 1.09007 * 109.47281 * 300.00387 * 20 19 9 43 43 H 1.09003 * 109.47240 * 60.00163 * 20 19 9 44 44 H 1.08995 * 109.50477 * 178.55228 * 23 5 4 45 45 H 1.09010 * 109.50206 * 298.67620 * 23 5 4 46 46 H 0.97005 * 119.99918 * 359.97438 * 27 26 24 47 47 H 0.97000 * 120.00165 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7235 1.2487 5 7 3.5093 -0.7871 1.2053 6 6 4.0446 -1.4250 2.4155 7 6 3.7656 -0.5497 3.6101 8 8 3.2814 0.5514 3.4552 9 7 4.0541 -0.9905 4.8506 10 6 3.7823 -0.1399 6.0120 11 6 2.3869 -0.4068 6.5146 12 1 1.7648 -1.1372 6.0187 13 6 1.9044 0.2817 7.6073 14 7 0.6867 0.0484 8.0463 15 14 2.9805 1.5446 8.4654 16 1 2.7701 2.8774 7.8452 17 1 2.6202 1.6060 9.9047 18 1 4.4069 1.1544 8.3284 19 6 4.6385 -2.3208 5.0377 20 6 3.5195 -3.3500 5.2093 21 6 4.1067 -4.6866 5.3980 22 7 4.5614 -5.7180 5.5422 23 6 3.9648 -1.4869 -0.0047 24 6 3.4344 -0.7559 -1.2407 25 1 3.8537 0.2496 -1.2768 26 6 3.8316 -1.5126 -2.4820 27 7 5.1326 -1.6258 -2.8148 28 8 2.9804 -2.0197 -3.1814 29 8 2.0084 -0.6761 -1.1659 30 1 -0.3633 0.5125 0.8908 31 1 -0.3633 0.5152 -0.8892 32 1 -0.3634 -1.0276 -0.0015 33 1 1.6338 -1.7341 1.2763 34 1 1.7267 -0.1791 2.1391 35 1 5.1207 -1.5615 2.3086 36 1 3.5675 -2.3948 2.5564 37 1 3.8705 0.9076 5.7237 38 1 4.5011 -0.3615 6.8008 39 1 0.3474 0.5325 8.8153 40 1 5.2395 -2.5796 4.1661 41 1 5.2696 -2.3188 5.9265 42 1 2.9184 -3.0913 6.0811 43 1 2.8884 -3.3522 4.3206 44 1 5.0544 -1.4999 -0.0291 45 1 3.5881 -2.5098 0.0029 46 1 5.8134 -1.2198 -2.2556 47 1 5.3884 -2.1131 -3.6135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347084368.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:02 Heat of formation + Delta-G solvation = -101.731739 kcal Electronic energy + Delta-G solvation = -30322.138057 eV Core-core repulsion = 26118.535514 eV Total energy + Delta-G solvation = -4203.602543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.55460 -40.69296 -39.52648 -37.98622 -36.89110 -36.39089 -34.88094 -34.68645 -33.67249 -32.28599 -31.01183 -29.76041 -28.22669 -26.59123 -25.10808 -24.52464 -23.27261 -22.03692 -21.33869 -19.93331 -19.19975 -18.76488 -18.28068 -17.98918 -17.94452 -17.20888 -17.00180 -16.83092 -16.64959 -16.18193 -16.00506 -15.70738 -15.45884 -15.29014 -15.00547 -14.79227 -14.57417 -14.43058 -14.01198 -13.83952 -13.79100 -13.57203 -13.52136 -13.33845 -13.20656 -13.01249 -12.84864 -12.72773 -12.46858 -12.39129 -12.21601 -11.92988 -11.86247 -11.75038 -11.53689 -10.95542 -10.82222 -10.70860 -10.69354 -10.41056 -9.46401 -9.35867 -8.21849 -6.24244 1.41191 1.45021 1.47560 1.50992 1.66978 1.82981 1.95333 2.01655 2.18120 2.40308 2.72355 3.10799 3.13161 3.15211 3.67306 3.73174 3.86703 3.92180 4.02675 4.08236 4.10589 4.18252 4.28469 4.32349 4.37935 4.47687 4.57664 4.59545 4.69945 4.80149 4.84983 4.87828 4.94696 5.02056 5.09216 5.14689 5.22460 5.57444 5.68409 5.75563 5.84453 5.87268 6.08605 6.35757 6.44517 6.59698 6.75549 6.80092 7.30204 7.36269 7.54569 8.93619 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011478 B = 0.003301 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.782410 B = 8479.711889 C = 9752.872579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.096 3.904 3 H 0.068 0.932 4 C 0.024 3.976 5 N -0.526 5.526 6 C 0.040 3.960 7 C 0.505 3.495 8 O -0.564 6.564 9 N -0.597 5.597 10 C 0.222 3.778 11 C -0.521 4.521 12 H 0.048 0.952 13 C 0.014 3.986 14 N -0.945 5.945 15 Si 0.933 3.067 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.234 1.234 19 C 0.119 3.881 20 C -0.044 4.044 21 C 0.247 3.753 22 N -0.487 5.487 23 C 0.034 3.966 24 C 0.072 3.928 25 H 0.110 0.890 26 C 0.529 3.471 27 N -0.823 5.823 28 O -0.578 6.578 29 O -0.380 6.380 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.039 0.961 34 H 0.079 0.921 35 H 0.146 0.854 36 H 0.082 0.918 37 H 0.020 0.980 38 H 0.052 0.948 39 H 0.263 0.737 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.118 0.882 44 H 0.133 0.867 45 H 0.046 0.954 46 H 0.421 0.579 47 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.745 -2.653 -16.956 21.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.038 3.962 3 H 0.086 0.914 4 C -0.104 4.104 5 N -0.251 5.251 6 C -0.090 4.090 7 C 0.294 3.706 8 O -0.442 6.442 9 N -0.328 5.328 10 C 0.099 3.901 11 C -0.560 4.560 12 H 0.066 0.934 13 C -0.184 4.184 14 N -0.586 5.586 15 Si 0.757 3.243 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.157 1.157 19 C -0.005 4.005 20 C -0.085 4.085 21 C -0.070 4.070 22 N -0.166 5.166 23 C -0.094 4.094 24 C 0.010 3.990 25 H 0.127 0.873 26 C 0.312 3.688 27 N -0.390 5.390 28 O -0.456 6.456 29 O -0.299 6.299 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.164 0.836 36 H 0.100 0.900 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.137 0.863 41 H 0.117 0.883 42 H 0.126 0.874 43 H 0.136 0.864 44 H 0.151 0.849 45 H 0.065 0.935 46 H 0.254 0.746 47 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 13.465 -3.408 -17.156 22.074 hybrid contribution -0.536 0.376 1.098 1.279 sum 12.929 -3.032 -16.058 20.838 Atomic orbital electron populations 1.21731 0.91847 1.03074 1.03279 1.22191 0.95678 0.95349 0.82984 0.91412 1.22840 0.87932 0.99823 0.99812 1.61791 1.09031 1.52745 1.01519 1.22194 1.04384 0.95211 0.87208 1.21008 0.77573 0.87463 0.84596 1.90669 1.44169 1.23552 1.85786 1.47885 1.62110 1.16819 1.06020 1.19403 0.95112 0.91095 0.84465 1.21611 0.99375 1.22527 1.12478 0.93379 1.25688 0.95970 0.98700 0.98043 1.70035 1.18095 1.43938 1.26537 0.85938 0.81243 0.79647 0.77440 1.20810 1.21409 1.15720 1.21604 0.93602 0.79577 1.05731 1.19882 0.99412 0.82595 1.06660 1.29170 0.92159 0.94315 0.91394 1.81254 1.10936 1.13367 1.11009 1.22764 1.03216 0.95522 0.87852 1.22083 0.83460 1.00737 0.92710 0.87253 1.20207 0.83597 0.79259 0.85702 1.43517 1.06087 1.58144 1.31267 1.90760 1.51783 1.48864 1.54224 1.88064 1.19611 1.78790 1.43461 0.90236 0.90902 0.92067 0.94241 0.90237 0.83625 0.90007 0.96168 0.93016 0.92774 0.86251 0.88342 0.87397 0.86392 0.84936 0.93536 0.74641 0.75290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.57 71.98 0.69 -2.66 16 2 C 0.10 2.44 3.43 30.63 0.10 2.55 16 3 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 4 C 0.02 0.65 4.58 86.31 0.40 1.04 16 5 N -0.53 -11.39 4.42 -899.80 -3.98 -15.37 16 6 C 0.04 0.77 3.91 85.56 0.33 1.10 16 7 C 0.51 15.48 7.24 87.66 0.63 16.12 16 8 O -0.56 -23.26 14.26 -3.05 -0.04 -23.30 16 9 N -0.60 -17.95 2.46 -826.17 -2.03 -19.98 16 10 C 0.22 8.87 4.27 85.63 0.37 9.24 16 11 C -0.52 -26.16 9.47 25.60 0.24 -25.91 16 12 H 0.05 2.64 7.66 -2.91 -0.02 2.61 16 13 C 0.01 0.75 5.47 84.65 0.46 1.21 16 14 N -0.95 -55.66 13.96 21.45 0.30 -55.36 16 15 Si 0.93 40.97 27.47 68.60 1.88 42.85 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 17 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 18 H -0.23 -8.99 6.54 99.48 0.65 -8.34 16 19 C 0.12 2.33 5.12 86.38 0.44 2.77 16 20 C -0.04 -0.94 5.97 28.79 0.17 -0.77 16 21 C 0.25 5.69 15.43 89.44 1.38 7.07 16 22 N -0.49 -13.74 18.54 20.01 0.37 -13.37 16 23 C 0.03 0.52 4.88 86.31 0.42 0.95 16 24 C 0.07 1.35 3.22 29.88 0.10 1.44 16 25 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 26 C 0.53 10.05 7.45 87.66 0.65 10.70 16 27 N -0.82 -6.29 8.84 -173.54 -1.53 -7.82 16 28 O -0.58 -17.53 17.35 15.95 0.28 -17.25 16 29 O -0.38 -10.15 9.65 -130.02 -1.25 -11.41 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 2.69 6.10 -2.39 -0.01 2.67 16 35 H 0.15 1.56 7.61 -2.39 -0.02 1.54 16 36 H 0.08 1.30 6.83 -2.39 -0.02 1.28 16 37 H 0.02 0.90 6.85 -2.39 -0.02 0.89 16 38 H 0.05 1.89 6.95 -2.39 -0.02 1.87 16 39 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 40 H 0.12 1.31 6.61 -2.39 -0.02 1.30 16 41 H 0.10 1.79 7.89 -2.39 -0.02 1.77 16 42 H 0.11 3.01 7.25 -2.38 -0.02 3.00 16 43 H 0.12 2.19 7.12 -2.39 -0.02 2.18 16 44 H 0.13 0.87 7.97 -2.39 -0.02 0.85 16 45 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 46 H 0.42 0.22 8.71 -92.70 -0.81 -0.58 16 47 H 0.41 2.38 8.93 -92.71 -0.83 1.55 16 Total: -1.00 -83.24 389.52 -0.28 -83.52 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -0.67 Total: 12.64 kcal Atomic # 6 Polarization: 18.45 SS G_CDS: 6.40 Total: 24.85 kcal Atomic # 7 Polarization: -105.03 SS G_CDS: -6.87 Total: -111.90 kcal Atomic # 8 Polarization: -50.94 SS G_CDS: -1.02 Total: -51.96 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 1.88 Total: 42.85 kcal Total: -83.24 -0.28 -83.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347084368.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.212 kcal (2) G-P(sol) polarization free energy of solvation -83.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds