Wall clock time and date at job start Tue Mar 31 2020 22:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.56659 * 2 1 4 4 C 1.50435 * 109.66164 * 120.29929 * 2 1 3 5 5 O 1.21281 * 118.49116 * 287.14593 * 4 2 1 6 6 N 1.33378 * 123.02381 * 107.17685 * 4 2 1 7 7 C 1.45652 * 124.58758 * 4.30979 * 6 4 2 8 8 C 1.53463 * 110.73909 * 337.98659 * 7 6 4 9 9 N 1.47047 * 109.56409 * 239.76411 * 2 1 3 10 10 C 1.34772 * 121.35166 * 102.77956 * 9 2 1 11 11 O 1.21350 * 120.00192 * 182.32108 * 10 9 2 12 12 C 1.49450 * 120.00471 * 2.31579 * 10 9 2 13 13 O 1.21354 * 119.99741 * 353.96306 * 12 10 9 14 14 N 1.34774 * 120.00622 * 173.96158 * 12 10 9 15 15 C 1.46497 * 120.00414 * 179.97438 * 14 12 10 16 16 C 1.53032 * 109.46369 * 205.00136 * 15 14 12 17 17 C 1.53192 * 109.34127 * 178.59665 * 16 15 14 18 18 N 1.46998 * 108.73791 * 54.62431 * 17 16 15 19 19 C 1.36931 * 120.61600 * 126.38614 * 18 17 16 20 20 H 1.07999 * 120.00424 * 329.87953 * 19 18 17 21 21 C 1.38819 * 119.99833 * 149.88019 * 19 18 17 22 22 N 1.31627 * 119.99730 * 168.29055 * 21 19 18 23 23 Si 1.86798 * 119.99919 * 348.28821 * 21 19 18 24 24 H 1.48498 * 109.46994 * 92.15889 * 23 21 19 25 25 H 1.48502 * 109.46781 * 212.15688 * 23 21 19 26 26 H 1.48494 * 109.47075 * 332.16000 * 23 21 19 27 27 C 1.46930 * 118.75362 * 306.41031 * 18 17 16 28 28 C 1.53044 * 109.46035 * 84.92940 * 15 14 12 29 29 H 1.08996 * 109.46968 * 180.23325 * 1 2 3 30 30 H 1.09004 * 109.46961 * 300.23422 * 1 2 3 31 31 H 1.09007 * 109.47073 * 60.23489 * 1 2 3 32 32 H 0.96996 * 117.70746 * 184.34060 * 6 4 2 33 33 H 1.09000 * 109.21664 * 98.44129 * 7 6 4 34 34 H 1.08996 * 109.21632 * 217.81220 * 7 6 4 35 35 H 1.09004 * 109.84559 * 287.31084 * 8 7 6 36 36 H 1.09004 * 109.83827 * 166.50808 * 8 7 6 37 37 H 0.97003 * 119.99262 * 0.02562 * 14 12 10 38 38 H 1.09002 * 109.45939 * 324.97838 * 15 14 12 39 39 H 1.09002 * 109.49886 * 298.56919 * 16 15 14 40 40 H 1.09008 * 109.49653 * 58.62854 * 16 15 14 41 41 H 1.09005 * 109.58829 * 174.43799 * 17 16 15 42 42 H 1.08990 * 109.58806 * 294.86340 * 17 16 15 43 43 H 0.96997 * 119.99463 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.58296 * 293.81946 * 27 18 17 45 45 H 1.08995 * 109.58587 * 173.39466 * 27 18 17 46 46 H 1.08996 * 109.49583 * 301.34105 * 28 15 14 47 47 H 1.09001 * 109.49378 * 61.40170 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0362 -0.7147 1.2231 5 8 1.9350 -0.1635 2.2987 6 7 2.5918 -1.9265 1.1792 7 6 2.8612 -2.6686 -0.0448 8 6 1.9703 -2.1694 -1.1903 9 7 2.0225 -0.6977 -1.1971 10 6 2.4972 -0.0178 -2.2595 11 8 2.8582 -0.6167 -3.2512 12 6 2.5789 1.4739 -2.2164 13 8 2.1177 2.0797 -1.2714 14 7 3.1648 2.1463 -3.2268 15 6 3.2444 3.6085 -3.1848 16 6 3.3504 4.1546 -4.6104 17 6 3.3982 5.6851 -4.5652 18 7 4.4948 6.0973 -3.6773 19 6 5.4573 6.9671 -4.1154 20 1 5.7304 6.9889 -5.1601 21 6 6.0822 7.8209 -3.2167 22 7 7.1568 8.4879 -3.5812 23 14 5.3980 8.0231 -1.4904 24 1 6.0603 7.0557 -0.5790 25 1 5.6547 9.4064 -1.0152 26 1 3.9352 7.7680 -1.5047 27 6 4.5388 5.5581 -2.3112 28 6 4.4779 4.0291 -2.3824 29 1 -0.3633 -1.0276 0.0042 30 1 -0.3633 0.5175 0.8879 31 1 -0.3633 0.5102 -0.8921 32 1 2.8330 -2.3429 2.0214 33 1 3.9081 -2.5397 -0.3195 34 1 2.6630 -3.7267 0.1262 35 1 0.9438 -2.5003 -1.0319 36 1 2.3391 -2.5550 -2.1408 37 1 3.5331 1.6620 -3.9823 38 1 2.3486 4.0073 -2.7088 39 1 4.2591 3.7759 -5.0784 40 1 2.4832 3.8345 -5.1881 41 1 3.5727 6.0750 -5.5680 42 1 2.4532 6.0689 -4.1811 43 1 7.5936 9.0842 -2.9531 44 1 3.6868 5.9317 -1.7433 45 1 5.4660 5.8647 -1.8271 46 1 4.4128 3.6202 -1.3742 47 1 5.3759 3.6510 -2.8710 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588127538.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:49 Heat of formation + Delta-G solvation = -79.414572 kcal Electronic energy + Delta-G solvation = -30602.499249 eV Core-core repulsion = 26399.864452 eV Total energy + Delta-G solvation = -4202.634798 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.45321 -41.13380 -40.03203 -39.11061 -37.79950 -36.42564 -35.55464 -34.08256 -32.35507 -32.03098 -31.92413 -30.23765 -27.50524 -26.36179 -25.31309 -24.54491 -24.35998 -23.11468 -21.69507 -21.32043 -20.21488 -19.20247 -18.79216 -18.64749 -17.79778 -17.55614 -17.40713 -17.24342 -16.65247 -16.53607 -15.98529 -15.85442 -15.57233 -15.42035 -15.37123 -15.00591 -14.80862 -14.53897 -14.26047 -14.11669 -13.90714 -13.80542 -13.48177 -13.41522 -13.30138 -13.16697 -12.75324 -12.65892 -12.61093 -12.21419 -12.12250 -11.97488 -11.75157 -11.60062 -11.44203 -11.42428 -10.83299 -10.38885 -10.29506 -10.25189 -9.99117 -8.92662 -8.15892 -5.54609 0.18924 1.03554 1.29328 1.39276 1.40313 1.47832 1.93870 2.07613 2.23359 2.39779 3.08612 3.09978 3.30143 3.32524 3.66569 3.74658 3.86021 3.98224 4.08863 4.10237 4.18169 4.28524 4.35029 4.44546 4.54141 4.59396 4.64774 4.67420 4.72238 4.80091 4.81485 4.89569 4.97025 4.97773 5.08018 5.09422 5.14326 5.32798 5.41249 5.68320 5.70645 5.88277 6.05853 6.12274 6.13774 6.53709 6.83354 6.90386 7.01275 7.59948 8.00861 9.03782 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017946 B = 0.002872 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.884147 B = 9747.211781 C =10518.089163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.085 3.915 3 H 0.159 0.841 4 C 0.515 3.485 5 O -0.587 6.587 6 N -0.709 5.709 7 C 0.095 3.905 8 C 0.084 3.916 9 N -0.581 5.581 10 C 0.521 3.479 11 O -0.525 6.525 12 C 0.502 3.498 13 O -0.530 6.530 14 N -0.676 5.676 15 C 0.157 3.843 16 C -0.128 4.128 17 C 0.146 3.854 18 N -0.622 5.622 19 C -0.243 4.243 20 H 0.058 0.942 21 C -0.038 4.038 22 N -0.964 5.964 23 Si 0.950 3.050 24 H -0.283 1.283 25 H -0.314 1.314 26 H -0.251 1.251 27 C 0.121 3.879 28 C -0.134 4.134 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.408 0.592 33 H 0.073 0.927 34 H 0.136 0.864 35 H 0.109 0.891 36 H 0.123 0.877 37 H 0.420 0.580 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.040 0.960 43 H 0.261 0.739 44 H 0.037 0.963 45 H 0.048 0.952 46 H 0.063 0.937 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.749 -28.537 4.168 32.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.021 4.021 3 H 0.175 0.825 4 C 0.301 3.699 5 O -0.467 6.467 6 N -0.361 5.361 7 C -0.028 4.028 8 C -0.037 4.037 9 N -0.316 5.316 10 C 0.304 3.696 11 O -0.401 6.401 12 C 0.284 3.716 13 O -0.408 6.408 14 N -0.327 5.327 15 C 0.054 3.946 16 C -0.168 4.168 17 C 0.021 3.979 18 N -0.347 5.347 19 C -0.373 4.373 20 H 0.076 0.924 21 C -0.232 4.232 22 N -0.610 5.610 23 Si 0.780 3.220 24 H -0.210 1.210 25 H -0.244 1.244 26 H -0.176 1.176 27 C -0.004 4.004 28 C -0.174 4.174 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.245 0.755 33 H 0.091 0.909 34 H 0.153 0.847 35 H 0.127 0.873 36 H 0.141 0.859 37 H 0.258 0.742 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.118 0.882 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.067 0.933 46 H 0.082 0.918 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.882 -27.961 4.616 32.009 hybrid contribution 0.730 0.371 0.898 1.216 sum -14.152 -27.589 5.514 31.494 Atomic orbital electron populations 1.21882 0.90306 1.03683 1.03860 1.22657 0.98438 1.00850 0.80114 0.82508 1.20469 0.77134 0.81821 0.90492 1.90782 1.58738 1.65916 1.31280 1.45417 1.61547 1.17272 1.11836 1.22092 0.99940 0.98153 0.82654 1.22548 1.02822 0.76845 1.01443 1.48204 1.60084 1.08301 1.15059 1.19871 0.78454 0.87898 0.83395 1.90769 1.47994 1.69943 1.31415 1.20339 0.79269 0.88725 0.83305 1.90490 1.48054 1.69690 1.32609 1.45927 1.56468 1.07831 1.22517 1.20946 0.98330 0.77641 0.97732 1.22200 1.03580 0.96702 0.94271 1.21103 0.89551 0.92691 0.94569 1.44529 1.27664 1.51611 1.10870 1.18906 1.12170 1.11287 0.94910 0.92379 1.25980 0.97933 0.97106 1.02176 1.69892 1.21319 1.32549 1.37275 0.85939 0.80192 0.74870 0.81000 1.21028 1.24391 1.17557 1.21411 0.98961 0.93031 0.87045 1.22272 0.98640 0.96309 1.00173 0.90388 0.90747 0.90744 0.75524 0.90873 0.84656 0.87337 0.85892 0.74229 0.89477 0.91145 0.88208 0.91331 0.94185 0.93035 0.94495 0.93349 0.91816 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.38 71.98 0.68 -1.50 16 2 C 0.08 1.66 2.68 44.06 0.12 1.78 16 3 H 0.16 4.07 4.33 -50.30 -0.22 3.85 16 4 C 0.51 10.74 7.10 87.79 0.62 11.36 16 5 O -0.59 -17.50 17.80 -3.03 -0.05 -17.55 16 6 N -0.71 -8.72 5.42 -466.30 -2.53 -11.25 16 7 C 0.10 0.53 7.35 86.69 0.64 1.17 16 8 C 0.08 0.68 6.43 86.39 0.56 1.24 16 9 N -0.58 -9.44 2.62 -799.89 -2.09 -11.53 16 10 C 0.52 10.70 7.79 87.27 0.68 11.38 16 11 O -0.52 -11.68 15.97 -3.25 -0.05 -11.73 16 12 C 0.50 12.06 7.77 87.27 0.68 12.74 16 13 O -0.53 -14.94 12.75 -3.26 -0.04 -14.98 16 14 N -0.68 -15.46 5.07 -443.75 -2.25 -17.71 16 15 C 0.16 4.33 2.42 45.02 0.11 4.44 16 16 C -0.13 -3.37 5.55 30.67 0.17 -3.20 16 17 C 0.15 5.08 6.52 86.35 0.56 5.64 16 18 N -0.62 -28.15 2.78 -698.93 -1.94 -30.09 16 19 C -0.24 -13.53 10.09 84.04 0.85 -12.68 16 20 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 21 C -0.04 -2.21 5.37 84.86 0.46 -1.76 16 22 N -0.96 -61.00 13.97 21.65 0.30 -60.70 16 23 Si 0.95 47.47 24.26 68.60 1.66 49.14 16 24 H -0.28 -13.67 6.69 99.48 0.67 -13.01 16 25 H -0.31 -16.07 7.11 99.48 0.71 -15.36 16 26 H -0.25 -11.81 5.95 99.48 0.59 -11.22 16 27 C 0.12 5.10 4.11 86.36 0.36 5.45 16 28 C -0.13 -4.52 5.65 30.67 0.17 -4.34 16 29 H 0.08 0.86 7.49 -2.39 -0.02 0.84 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.41 4.07 8.80 -92.71 -0.82 3.25 16 33 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.14 -0.27 8.14 -2.39 -0.02 -0.29 16 35 H 0.11 0.46 7.50 -2.38 -0.02 0.44 16 36 H 0.12 0.93 7.06 -2.39 -0.02 0.92 16 37 H 0.42 8.22 8.09 -92.71 -0.75 7.47 16 38 H 0.09 2.54 7.58 -2.39 -0.02 2.52 16 39 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.07 2.40 7.94 -2.38 -0.02 2.38 16 42 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 44 H 0.04 1.54 6.66 -2.39 -0.02 1.53 16 45 H 0.05 2.29 4.24 -2.39 -0.01 2.28 16 46 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.06 2.21 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -77.02 367.94 -1.26 -78.28 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -0.90 Total: 16.40 kcal Atomic # 6 Polarization: 25.08 SS G_CDS: 6.64 Total: 31.72 kcal Atomic # 7 Polarization: -122.76 SS G_CDS: -8.51 Total: -131.27 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -0.15 Total: -44.26 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.66 Total: 49.14 kcal Total: -77.02 -1.26 -78.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588127538.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.138 kcal (2) G-P(sol) polarization free energy of solvation -77.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds