Wall clock time and date at job start Tue Mar 31 2020 22:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.66688 * 2 1 4 4 C 1.50444 * 109.56676 * 239.69774 * 2 1 3 5 5 O 1.21278 * 118.48486 * 47.45041 * 4 2 1 6 6 N 1.33376 * 123.02408 * 227.46767 * 4 2 1 7 7 C 1.45650 * 124.59135 * 4.32547 * 6 4 2 8 8 C 1.53474 * 110.73518 * 337.97489 * 7 6 4 9 9 N 1.47051 * 109.56796 * 120.29289 * 2 1 3 10 10 C 1.34780 * 121.35438 * 342.53635 * 9 2 1 11 11 O 1.21350 * 119.99872 * 5.95278 * 10 9 2 12 12 C 1.49445 * 119.99945 * 185.94362 * 10 9 2 13 13 O 1.21345 * 120.00372 * 356.56498 * 12 10 9 14 14 N 1.34775 * 119.99993 * 176.55922 * 12 10 9 15 15 C 1.46503 * 120.00210 * 179.73126 * 14 12 10 16 16 C 1.53043 * 109.45680 * 275.34117 * 15 14 12 17 17 C 1.53186 * 109.31143 * 178.61541 * 16 15 14 18 18 N 1.46929 * 108.77828 * 54.63572 * 17 16 15 19 19 C 1.36936 * 120.62856 * 126.36948 * 18 17 16 20 20 H 1.08001 * 119.99250 * 211.88445 * 19 18 17 21 21 C 1.38808 * 120.00146 * 31.89121 * 19 18 17 22 22 N 1.31615 * 120.00135 * 24.32030 * 21 19 18 23 23 Si 1.86804 * 119.99899 * 204.31964 * 21 19 18 24 24 H 1.48497 * 109.47140 * 94.98981 * 23 21 19 25 25 H 1.48493 * 109.47403 * 214.99350 * 23 21 19 26 26 H 1.48500 * 109.46951 * 334.99185 * 23 21 19 27 27 C 1.46924 * 118.73501 * 306.39050 * 18 17 16 28 28 C 1.53038 * 109.45997 * 155.27650 * 15 14 12 29 29 H 1.08999 * 109.46728 * 308.22245 * 1 2 3 30 30 H 1.08990 * 109.47181 * 68.22556 * 1 2 3 31 31 H 1.08998 * 109.47151 * 188.22995 * 1 2 3 32 32 H 0.96997 * 117.70848 * 184.29629 * 6 4 2 33 33 H 1.08997 * 109.22058 * 98.42508 * 7 6 4 34 34 H 1.09004 * 109.21893 * 217.80866 * 7 6 4 35 35 H 1.08995 * 109.85269 * 287.31759 * 8 7 6 36 36 H 1.09008 * 109.83708 * 166.50550 * 8 7 6 37 37 H 0.97003 * 119.99747 * 359.97438 * 14 12 10 38 38 H 1.08993 * 109.46068 * 35.29859 * 15 14 12 39 39 H 1.08999 * 109.49866 * 298.56864 * 16 15 14 40 40 H 1.08998 * 109.49898 * 58.66506 * 16 15 14 41 41 H 1.09001 * 109.58509 * 294.84715 * 17 16 15 42 42 H 1.09007 * 109.70394 * 174.49508 * 17 16 15 43 43 H 0.97006 * 119.99670 * 180.02562 * 22 21 19 44 44 H 1.09004 * 109.59006 * 293.82157 * 27 18 17 45 45 H 1.09001 * 109.69843 * 173.46742 * 27 18 17 46 46 H 1.09003 * 109.49720 * 301.33273 * 28 15 14 47 47 H 1.09002 * 109.50325 * 61.39978 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8968 1.0264 0.0000 4 6 2.0339 -0.7152 -1.2239 5 8 1.5484 -0.4340 -2.2991 6 7 2.9896 -1.6446 -1.1809 7 6 3.5987 -2.1483 0.0426 8 6 3.4267 -1.1426 1.1891 9 7 2.0225 -0.6989 1.1964 10 6 1.2229 -0.9195 2.2587 11 8 0.0443 -0.6365 2.2001 12 6 1.7877 -1.5127 3.5087 13 8 2.9517 -1.8534 3.5465 14 7 1.0042 -1.6691 4.5941 15 6 1.5563 -2.2560 5.8177 16 6 1.4933 -3.7823 5.7243 17 6 2.1029 -4.3928 6.9901 18 7 1.4186 -3.8313 8.1629 19 6 0.8628 -4.6535 9.1063 20 1 -0.0217 -4.3407 9.6414 21 6 1.4361 -5.8887 9.3750 22 7 2.7118 -6.0911 9.1224 23 14 0.3970 -7.2639 10.0952 24 1 -0.1042 -8.1316 8.9992 25 1 1.2229 -8.0719 11.0280 26 1 -0.7539 -6.6813 10.8310 27 6 1.3419 -2.3708 8.3037 28 6 0.7408 -1.7829 7.0231 29 1 -0.3633 0.6358 0.8074 30 1 -0.3633 0.3812 -0.9542 31 1 -0.3633 -1.0171 0.1471 32 1 3.3006 -2.0110 -2.0234 33 1 3.1265 -3.0917 0.3164 34 1 4.6621 -2.3157 -0.1286 35 1 4.0822 -0.2862 1.0317 36 1 3.6665 -1.6203 2.1392 37 1 0.0738 -1.3963 4.5641 38 1 2.5935 -1.9421 5.9350 39 1 0.4543 -4.0986 5.6318 40 1 2.0550 -4.1170 4.8522 41 1 3.1650 -4.1524 7.0368 42 1 1.9736 -5.4751 6.9751 43 1 3.1124 -6.9545 9.3099 44 1 2.3420 -1.9654 8.4575 45 1 0.7097 -2.1165 9.1544 46 1 0.7668 -0.6944 7.0754 47 1 -0.2913 -2.1175 6.9182 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588127539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:55 Heat of formation + Delta-G solvation = -46.151076 kcal Electronic energy + Delta-G solvation = -30349.412345 eV Core-core repulsion = 26148.219961 eV Total energy + Delta-G solvation = -4201.192384 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.61748 -40.21278 -38.89625 -37.62309 -36.90833 -35.03613 -34.45203 -32.25302 -31.91269 -30.23723 -29.75059 -29.02330 -26.22487 -25.39045 -23.93374 -23.53857 -22.41327 -21.82605 -20.62067 -19.92751 -19.26207 -18.11094 -17.76048 -16.98846 -16.83660 -16.57177 -16.30597 -15.73248 -15.56171 -15.43860 -14.84336 -14.57921 -14.36585 -13.98908 -13.81385 -13.68158 -13.65558 -13.24937 -13.10579 -12.76812 -12.64854 -12.52957 -12.39212 -12.36605 -11.90908 -11.56665 -11.32642 -11.06622 -10.80987 -10.79731 -10.55272 -10.52807 -10.33143 -10.21963 -9.89716 -9.75133 -9.56726 -9.20248 -9.08962 -8.99367 -8.50000 -6.74999 -5.88539 -3.30562 1.19273 1.91715 2.18426 2.74644 3.00515 3.26411 3.34225 3.42622 3.43448 3.97888 4.18180 4.35586 4.44549 4.62873 4.70240 4.74845 4.85392 5.11564 5.26896 5.27965 5.31494 5.44045 5.49130 5.54175 5.64003 5.65802 5.73236 5.92750 6.08658 6.13213 6.21077 6.25955 6.29512 6.41227 6.51228 6.60529 6.64806 6.67749 6.83378 6.84611 7.11980 7.16675 7.42980 7.51950 7.73788 7.77582 7.88868 8.38121 9.11497 9.75455 10.34894 11.19388 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023104 B = 0.002402 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.640191 B =11653.647572 C =12048.451333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.131 3.869 3 H 0.109 0.891 4 C 0.516 3.484 5 O -0.544 6.544 6 N -0.718 5.718 7 C 0.095 3.905 8 C 0.034 3.966 9 N -0.589 5.589 10 C 0.515 3.485 11 O -0.507 6.507 12 C 0.508 3.492 13 O -0.513 6.513 14 N -0.682 5.682 15 C 0.147 3.853 16 C -0.147 4.147 17 C 0.177 3.823 18 N -0.589 5.589 19 C -0.265 4.265 20 H 0.065 0.935 21 C 0.012 3.988 22 N -0.890 5.890 23 Si 0.895 3.105 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.277 1.277 27 C 0.149 3.851 28 C -0.140 4.140 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.400 0.600 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.180 0.820 37 H 0.410 0.590 38 H 0.089 0.911 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.025 0.975 42 H 0.075 0.925 43 H 0.255 0.745 44 H 0.021 0.979 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.549 11.483 -16.764 20.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.025 3.975 3 H 0.127 0.873 4 C 0.301 3.699 5 O -0.421 6.421 6 N -0.370 5.370 7 C -0.029 4.029 8 C -0.087 4.087 9 N -0.326 5.326 10 C 0.298 3.702 11 O -0.382 6.382 12 C 0.289 3.711 13 O -0.392 6.392 14 N -0.332 5.332 15 C 0.045 3.955 16 C -0.187 4.187 17 C 0.051 3.949 18 N -0.312 5.312 19 C -0.395 4.395 20 H 0.082 0.918 21 C -0.189 4.189 22 N -0.532 5.532 23 Si 0.725 3.275 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.202 1.202 27 C 0.022 3.978 28 C -0.180 4.180 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.235 0.765 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.196 0.804 37 H 0.245 0.755 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.043 0.957 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.039 0.961 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.482 11.481 -17.007 20.573 hybrid contribution -0.510 -0.868 -0.189 1.025 sum 0.972 10.613 -17.195 20.230 Atomic orbital electron populations 1.22135 0.89497 1.04584 1.03070 1.21564 0.98566 0.96351 0.81034 0.87342 1.20299 0.79007 0.79683 0.90938 1.90782 1.56707 1.64798 1.29793 1.45469 1.39487 1.41288 1.10725 1.21929 0.99213 0.97797 0.84000 1.23864 0.80341 0.99288 1.05250 1.48095 1.12830 1.56825 1.14835 1.20246 0.86157 0.79406 0.84358 1.90805 1.15289 1.49838 1.82247 1.20023 0.86421 0.79913 0.84754 1.90251 1.16504 1.51109 1.81321 1.46247 1.14795 1.59957 1.12233 1.21295 0.98713 0.94238 0.81288 1.22578 1.01845 0.93403 1.00912 1.20639 0.93570 0.98178 0.82552 1.44064 1.65931 0.99339 1.21874 1.19083 1.05674 0.98034 1.16680 0.91759 1.25081 0.94723 1.00213 0.98847 1.70135 1.09176 1.23047 1.50799 0.86398 0.80064 0.82561 0.78516 1.21362 1.21793 1.20222 1.20848 0.97490 0.86005 0.93479 1.22379 1.00118 0.99401 0.96144 0.89010 0.91469 0.91449 0.76473 0.90895 0.88865 0.90376 0.80402 0.75451 0.89262 0.92200 0.92631 0.95736 0.90622 0.93548 0.96068 0.92055 0.92287 0.91490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 7.56 37.16 0.28 -1.16 16 2 C 0.13 1.28 3.67 -68.91 -0.25 1.02 16 3 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 4 C 0.52 5.50 7.35 -11.73 -0.09 5.42 16 5 O -0.54 -7.55 17.04 5.56 0.09 -7.46 16 6 N -0.72 -5.75 5.42 -61.06 -0.33 -6.08 16 7 C 0.10 0.62 7.35 -4.25 -0.03 0.59 16 8 C 0.03 0.27 6.40 -3.38 -0.02 0.24 16 9 N -0.59 -5.81 2.97 -166.75 -0.50 -6.30 16 10 C 0.52 5.98 7.63 -11.59 -0.09 5.89 16 11 O -0.51 -6.48 12.34 5.50 0.07 -6.42 16 12 C 0.51 6.37 7.79 -11.59 -0.09 6.28 16 13 O -0.51 -6.97 12.73 5.50 0.07 -6.90 16 14 N -0.68 -8.63 5.07 -54.20 -0.27 -8.90 16 15 C 0.15 2.23 2.41 -67.89 -0.16 2.06 16 16 C -0.15 -2.60 5.65 -26.61 -0.15 -2.75 16 17 C 0.18 3.95 5.37 -3.71 -0.02 3.93 16 18 N -0.59 -13.85 2.96 -172.32 -0.51 -14.36 16 19 C -0.27 -6.97 9.48 -15.06 -0.14 -7.12 16 20 H 0.06 1.67 7.94 -52.49 -0.42 1.26 16 21 C 0.01 0.32 4.67 -17.43 -0.08 0.24 16 22 N -0.89 -25.13 12.00 55.49 0.67 -24.46 16 23 Si 0.90 20.98 29.62 -169.99 -5.03 15.94 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 C 0.15 2.85 6.51 -3.71 -0.02 2.83 16 28 C -0.14 -2.11 5.55 -26.61 -0.15 -2.26 16 29 H 0.09 0.99 6.49 -51.93 -0.34 0.65 16 30 H 0.07 0.70 7.62 -51.93 -0.40 0.31 16 31 H 0.07 0.81 7.23 -51.93 -0.38 0.44 16 32 H 0.40 2.69 8.80 -40.82 -0.36 2.33 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.18 1.70 3.82 -56.66 -0.22 1.48 16 37 H 0.41 4.65 8.08 -40.82 -0.33 4.32 16 38 H 0.09 1.46 7.58 -51.93 -0.39 1.06 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 1.90 6.59 -51.93 -0.34 1.55 16 43 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 370.67 15.07 5.59 5.59 Total: -1.00 -31.22 370.67 -8.12 -39.34 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.94 Total: 4.79 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: -1.02 Total: 15.22 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -0.95 Total: -60.11 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: 0.23 Total: -20.78 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.22 -8.12 -39.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588127539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.811 kcal (2) G-P(sol) polarization free energy of solvation -31.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds