Wall clock time and date at job start Tue Mar 31 2020 21:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00254 * 2 1 4 4 C 1.53005 * 109.47048 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47205 * 64.99940 * 4 3 2 6 6 C 1.46495 * 119.99899 * 270.00301 * 5 4 3 7 7 C 1.50701 * 109.46620 * 269.99614 * 6 5 4 8 8 H 1.08005 * 120.00300 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00082 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99622 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00223 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47022 * 89.99631 * 11 9 7 13 13 H 1.48500 * 109.46761 * 209.99294 * 11 9 7 14 14 H 1.48495 * 109.46785 * 329.99401 * 11 9 7 15 15 C 1.34778 * 119.99450 * 89.99504 * 5 4 3 16 16 O 1.21582 * 119.99437 * 179.97438 * 15 5 4 17 17 N 1.34768 * 120.00535 * 0.27992 * 15 5 4 18 18 C 1.39382 * 120.00432 * 174.58884 * 17 15 5 19 19 C 1.39102 * 120.04959 * 185.04672 * 18 17 15 20 20 N 1.32032 * 120.04611 * 180.02562 * 19 18 17 21 21 C 1.32096 * 120.14282 * 359.97438 * 20 19 18 22 22 C 1.38946 * 120.08416 * 0.02562 * 21 20 19 23 23 O 1.35676 * 120.01985 * 180.02562 * 22 21 20 24 24 C 1.42899 * 117.00141 * 180.02562 * 23 22 21 25 25 C 1.52999 * 109.47362 * 89.99711 * 24 23 22 26 26 C 1.52999 * 109.47303 * 209.99564 * 24 23 22 27 27 N 1.32591 * 119.95699 * 359.72435 * 22 21 20 28 28 H 1.08997 * 109.47177 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46973 * 300.00407 * 1 2 3 30 30 H 1.09001 * 109.46935 * 59.99966 * 1 2 3 31 31 H 1.08992 * 109.46851 * 59.99844 * 3 2 1 32 32 H 1.09000 * 109.47271 * 299.99683 * 3 2 1 33 33 H 1.08998 * 109.46795 * 304.99932 * 4 3 2 34 34 H 1.08998 * 109.46808 * 184.99827 * 4 3 2 35 35 H 1.08999 * 109.47562 * 29.99699 * 6 5 4 36 36 H 1.09001 * 109.46797 * 150.00053 * 6 5 4 37 37 H 0.96995 * 120.00159 * 180.02562 * 10 9 7 38 38 H 0.97005 * 119.99875 * 354.59136 * 17 15 5 39 39 H 1.07998 * 119.97385 * 359.97438 * 19 18 17 40 40 H 1.07997 * 119.95812 * 179.97438 * 21 20 19 41 41 H 1.09001 * 109.47029 * 330.00171 * 24 23 22 42 42 H 1.09000 * 109.47258 * 180.02562 * 25 24 23 43 43 H 1.09001 * 109.47187 * 300.00287 * 25 24 23 44 44 H 1.08993 * 109.47407 * 59.99944 * 25 24 23 45 45 H 1.09006 * 109.46936 * 60.00130 * 26 24 23 46 46 H 1.09000 * 109.47033 * 179.97438 * 26 24 23 47 47 H 1.08989 * 109.47308 * 300.00101 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.1062 -0.8927 -1.3403 7 6 5.5016 -1.2983 -0.9412 8 1 6.2201 -0.5463 -0.6497 9 6 5.8613 -2.6293 -0.9481 10 7 4.9863 -3.5450 -1.3026 11 14 7.5908 -3.1322 -0.4528 12 1 7.6330 -3.3847 1.0100 13 1 7.9740 -4.3690 -1.1799 14 1 8.5400 -2.0426 -0.7946 15 6 4.2634 1.3328 -2.3200 16 8 4.6300 0.8177 -3.3585 17 7 4.1495 2.6731 -2.2361 18 6 4.5527 3.4749 -3.3025 19 6 4.5343 4.8603 -3.1781 20 7 4.9158 5.6198 -4.1885 21 6 5.3163 5.0672 -5.3195 22 6 5.3369 3.6840 -5.4499 23 8 5.7490 3.1179 -6.6120 24 6 5.7439 1.6903 -6.6757 25 6 4.3869 1.2076 -7.1920 26 6 6.8476 1.2182 -7.6242 27 7 4.9593 2.9177 -4.4359 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8463 0.8899 32 1 1.6887 1.8464 -0.8900 33 1 3.8507 0.5684 0.8427 34 1 3.9785 2.1764 0.0902 35 1 3.3857 -1.3633 -0.6713 36 1 3.9138 -1.2123 -2.3644 37 1 5.2391 -4.4814 -1.3072 38 1 3.7870 3.0797 -1.4335 39 1 4.2070 5.3148 -2.2548 40 1 5.6273 5.6913 -6.1442 41 1 5.9203 1.2816 -5.6808 42 1 4.3829 0.1187 -7.2402 43 1 3.6005 1.5440 -6.5163 44 1 4.2104 1.6163 -8.1869 45 1 7.8144 1.5620 -7.2564 46 1 6.8440 0.1292 -7.6725 47 1 6.6712 1.6269 -8.6191 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594135459.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:05 Heat of formation + Delta-G solvation = -38.862926 kcal Electronic energy + Delta-G solvation = -30615.012414 eV Core-core repulsion = 26414.136068 eV Total energy + Delta-G solvation = -4200.876346 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.34846 -39.70913 -38.55261 -37.64095 -35.36504 -34.67726 -33.62759 -32.85859 -32.38408 -29.70453 -29.64680 -27.13552 -27.09145 -26.03639 -24.91305 -23.92119 -22.82188 -22.48433 -21.39300 -19.64653 -18.82839 -17.62316 -17.14233 -16.72223 -16.50012 -16.39866 -16.12555 -15.89944 -15.51860 -14.97738 -14.79711 -14.57324 -14.50712 -13.95627 -13.92639 -13.40409 -13.31607 -12.93761 -12.49789 -12.39242 -12.21375 -12.20486 -12.00948 -11.88831 -11.76565 -11.46403 -11.37224 -11.26109 -10.99678 -10.94681 -10.85494 -10.51842 -10.45221 -10.12934 -9.74029 -9.61182 -9.55208 -9.51245 -8.76109 -8.38194 -8.14181 -7.66167 -5.99562 -4.03623 0.98691 1.29968 2.72236 3.01805 3.31547 3.38249 3.42594 3.60638 3.90996 4.02511 4.09324 4.33896 4.47493 4.49596 4.59997 5.01784 5.12583 5.17956 5.23254 5.26483 5.31801 5.34442 5.35791 5.43067 5.47186 5.47870 5.49916 5.68524 5.77720 5.80077 5.86991 5.96784 6.09398 6.11735 6.24205 6.35880 6.49559 6.64193 7.21531 7.30102 7.32331 7.49948 7.54693 7.62228 7.92618 7.99414 8.28676 8.52544 8.96215 9.20039 9.60574 11.08225 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008286 B = 0.004363 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3378.306557 B = 6416.472895 C = 8346.096309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.042 3.958 4 C 0.109 3.891 5 N -0.597 5.597 6 C 0.266 3.734 7 C -0.526 4.526 8 H 0.054 0.946 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.895 3.105 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.685 3.315 16 O -0.520 6.520 17 N -0.669 5.669 18 C 0.392 3.608 19 C -0.043 4.043 20 N -0.377 5.377 21 C -0.020 4.020 22 C 0.317 3.683 23 O -0.297 6.297 24 C 0.074 3.926 25 C -0.159 4.159 26 C -0.147 4.147 27 N -0.487 5.487 28 H 0.085 0.915 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.043 0.957 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.041 0.959 37 H 0.262 0.738 38 H 0.410 0.590 39 H 0.167 0.833 40 H 0.171 0.829 41 H 0.108 0.892 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.078 0.922 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.499 15.164 -2.800 16.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C -0.037 4.037 4 C -0.016 4.016 5 N -0.333 5.333 6 C 0.147 3.853 7 C -0.565 4.565 8 H 0.073 0.927 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.386 3.614 16 O -0.390 6.390 17 N -0.320 5.320 18 C 0.155 3.845 19 C -0.208 4.208 20 N -0.091 5.091 21 C -0.184 4.184 22 C 0.133 3.867 23 O -0.202 6.202 24 C 0.018 3.982 25 C -0.217 4.217 26 C -0.204 4.204 27 N -0.222 5.222 28 H 0.103 0.897 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.248 0.752 39 H 0.185 0.815 40 H 0.188 0.812 41 H 0.126 0.874 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.097 0.903 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.035 14.305 -3.794 15.632 hybrid contribution 0.409 -0.178 0.953 1.052 sum -4.626 14.127 -2.841 15.134 Atomic orbital electron populations 1.22709 0.81896 1.02720 0.99131 1.88107 1.18821 1.26599 1.95125 1.23141 0.95241 0.85773 0.99519 1.21509 0.91246 0.98611 0.90277 1.47625 1.67665 1.09529 1.08436 1.19276 0.96706 0.70300 0.99026 1.21470 0.97516 0.92179 1.45348 0.92727 1.24886 0.97263 0.96395 0.95365 1.69939 1.34289 1.00967 1.47982 0.86556 0.84780 0.78046 0.78356 1.20696 1.21155 1.20071 1.16097 0.80224 0.79743 0.85367 1.90981 1.49350 1.70612 1.28066 1.43290 1.65086 1.06687 1.16920 1.18988 0.90491 0.88353 0.86667 1.22819 1.08877 0.88724 1.00374 1.68257 1.04691 1.37448 0.98673 1.22526 1.07620 0.90286 0.97943 1.20867 0.89698 0.90297 0.85859 1.86283 1.79040 1.24944 1.29925 1.22544 0.96195 0.76694 1.02724 1.22106 0.96805 1.02043 1.00725 1.21885 0.97754 1.01742 0.99038 1.68074 1.16783 1.37750 0.99640 0.89657 0.94601 0.94616 0.92851 0.93909 0.88307 0.90770 0.93389 0.94139 0.92830 0.75215 0.81539 0.81188 0.87410 0.90871 0.92128 0.92715 0.91998 0.90290 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.37 -5.99 9.53 -35.23 -0.34 -6.33 16 3 C 0.04 0.54 6.28 37.16 0.23 0.77 16 4 C 0.11 1.61 5.54 -4.04 -0.02 1.58 16 5 N -0.60 -12.15 2.42 -180.80 -0.44 -12.59 16 6 C 0.27 6.86 4.98 -5.20 -0.03 6.84 16 7 C -0.53 -14.77 9.39 -34.44 -0.32 -15.10 16 8 H 0.05 1.54 7.81 -52.48 -0.41 1.13 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 11 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 15 C 0.68 14.02 8.24 -86.92 -0.72 13.30 16 16 O -0.52 -12.87 14.11 5.29 0.07 -12.79 16 17 N -0.67 -10.16 5.22 -15.73 -0.08 -10.24 16 18 C 0.39 6.11 7.42 -154.42 -1.15 4.97 16 19 C -0.04 -0.54 11.07 -17.15 -0.19 -0.72 16 20 N -0.38 -5.03 10.48 -12.76 -0.13 -5.17 16 21 C -0.02 -0.27 11.16 -17.18 -0.19 -0.46 16 22 C 0.32 5.00 7.46 -16.96 -0.13 4.87 16 23 O -0.30 -4.52 9.77 -18.73 -0.18 -4.70 16 24 C 0.07 1.15 3.12 -26.73 -0.08 1.06 16 25 C -0.16 -2.32 9.53 37.16 0.35 -1.97 16 26 C -0.15 -1.82 9.56 37.16 0.36 -1.46 16 27 N -0.49 -8.74 6.38 -12.24 -0.08 -8.82 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.10 1.58 8.07 -51.93 -0.42 1.16 16 34 H 0.07 0.80 6.44 -51.93 -0.33 0.47 16 35 H 0.05 1.29 7.11 -51.93 -0.37 0.92 16 36 H 0.04 1.20 7.42 -51.93 -0.39 0.81 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.41 4.44 6.52 -40.82 -0.27 4.18 16 39 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.17 1.79 8.06 -52.49 -0.42 1.36 16 41 H 0.11 2.07 6.89 -51.93 -0.36 1.71 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.06 0.66 8.14 -51.94 -0.42 0.24 16 LS Contribution 396.52 15.07 5.98 5.98 Total: -1.00 -35.35 396.52 -7.52 -42.87 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -7.17 Total: 3.77 kcal Atomic # 6 Polarization: 17.74 SS G_CDS: -0.87 Total: 16.87 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: 0.00 Total: -62.57 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.44 Total: -23.82 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.35 -7.52 -42.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594135459.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.012 kcal (2) G-P(sol) polarization free energy of solvation -35.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds