Wall clock time and date at job start Tue Mar 31 2020 21:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00254 * 2 1 4 4 C 1.53005 * 109.47048 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47205 * 64.99940 * 4 3 2 6 6 C 1.46495 * 119.99899 * 270.00301 * 5 4 3 7 7 C 1.50701 * 109.46620 * 269.99614 * 6 5 4 8 8 H 1.08005 * 120.00300 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00082 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99622 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00223 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47022 * 89.99631 * 11 9 7 13 13 H 1.48500 * 109.46761 * 209.99294 * 11 9 7 14 14 H 1.48495 * 109.46785 * 329.99401 * 11 9 7 15 15 C 1.34778 * 119.99450 * 89.99504 * 5 4 3 16 16 O 1.21582 * 119.99437 * 179.97438 * 15 5 4 17 17 N 1.34768 * 120.00535 * 0.27992 * 15 5 4 18 18 C 1.39382 * 120.00432 * 174.58884 * 17 15 5 19 19 C 1.39102 * 120.04959 * 185.04672 * 18 17 15 20 20 N 1.32032 * 120.04611 * 180.02562 * 19 18 17 21 21 C 1.32096 * 120.14282 * 359.97438 * 20 19 18 22 22 C 1.38946 * 120.08416 * 0.02562 * 21 20 19 23 23 O 1.35676 * 120.01985 * 180.02562 * 22 21 20 24 24 C 1.42899 * 117.00141 * 180.02562 * 23 22 21 25 25 C 1.52999 * 109.47362 * 89.99711 * 24 23 22 26 26 C 1.52999 * 109.47303 * 209.99564 * 24 23 22 27 27 N 1.32591 * 119.95699 * 359.72435 * 22 21 20 28 28 H 1.08997 * 109.47177 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46973 * 300.00407 * 1 2 3 30 30 H 1.09001 * 109.46935 * 59.99966 * 1 2 3 31 31 H 1.08992 * 109.46851 * 59.99844 * 3 2 1 32 32 H 1.09000 * 109.47271 * 299.99683 * 3 2 1 33 33 H 1.08998 * 109.46795 * 304.99932 * 4 3 2 34 34 H 1.08998 * 109.46808 * 184.99827 * 4 3 2 35 35 H 1.08999 * 109.47562 * 29.99699 * 6 5 4 36 36 H 1.09001 * 109.46797 * 150.00053 * 6 5 4 37 37 H 0.96995 * 120.00159 * 180.02562 * 10 9 7 38 38 H 0.97005 * 119.99875 * 354.59136 * 17 15 5 39 39 H 1.07998 * 119.97385 * 359.97438 * 19 18 17 40 40 H 1.07997 * 119.95812 * 179.97438 * 21 20 19 41 41 H 1.09001 * 109.47029 * 330.00171 * 24 23 22 42 42 H 1.09000 * 109.47258 * 180.02562 * 25 24 23 43 43 H 1.09001 * 109.47187 * 300.00287 * 25 24 23 44 44 H 1.08993 * 109.47407 * 59.99944 * 25 24 23 45 45 H 1.09006 * 109.46936 * 60.00130 * 26 24 23 46 46 H 1.09000 * 109.47033 * 179.97438 * 26 24 23 47 47 H 1.08989 * 109.47308 * 300.00101 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.1062 -0.8927 -1.3403 7 6 5.5016 -1.2983 -0.9412 8 1 6.2201 -0.5463 -0.6497 9 6 5.8613 -2.6293 -0.9481 10 7 4.9863 -3.5450 -1.3026 11 14 7.5908 -3.1322 -0.4528 12 1 7.6330 -3.3847 1.0100 13 1 7.9740 -4.3690 -1.1799 14 1 8.5400 -2.0426 -0.7946 15 6 4.2634 1.3328 -2.3200 16 8 4.6300 0.8177 -3.3585 17 7 4.1495 2.6731 -2.2361 18 6 4.5527 3.4749 -3.3025 19 6 4.5343 4.8603 -3.1781 20 7 4.9158 5.6198 -4.1885 21 6 5.3163 5.0672 -5.3195 22 6 5.3369 3.6840 -5.4499 23 8 5.7490 3.1179 -6.6120 24 6 5.7439 1.6903 -6.6757 25 6 4.3869 1.2076 -7.1920 26 6 6.8476 1.2182 -7.6242 27 7 4.9593 2.9177 -4.4359 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8463 0.8899 32 1 1.6887 1.8464 -0.8900 33 1 3.8507 0.5684 0.8427 34 1 3.9785 2.1764 0.0902 35 1 3.3857 -1.3633 -0.6713 36 1 3.9138 -1.2123 -2.3644 37 1 5.2391 -4.4814 -1.3072 38 1 3.7870 3.0797 -1.4335 39 1 4.2070 5.3148 -2.2548 40 1 5.6273 5.6913 -6.1442 41 1 5.9203 1.2816 -5.6808 42 1 4.3829 0.1187 -7.2402 43 1 3.6005 1.5440 -6.5163 44 1 4.2104 1.6163 -8.1869 45 1 7.8144 1.5620 -7.2564 46 1 6.8440 0.1292 -7.6725 47 1 6.6712 1.6269 -8.6191 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594135459.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:04 Heat of formation + Delta-G solvation = -64.797607 kcal Electronic energy + Delta-G solvation = -30616.137026 eV Core-core repulsion = 26414.136068 eV Total energy + Delta-G solvation = -4202.000959 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.53395 -41.13464 -39.72387 -38.79240 -36.80555 -36.20072 -34.91208 -34.63794 -33.78057 -31.15671 -30.80734 -28.87001 -28.24233 -27.12008 -26.22985 -25.26461 -24.34885 -23.87992 -22.59610 -21.05702 -20.10832 -18.99162 -18.59312 -18.37858 -17.74694 -17.62743 -17.25434 -17.12968 -16.73561 -16.67898 -16.24908 -15.87731 -15.70882 -15.52604 -15.18259 -14.77782 -14.57136 -14.29911 -13.95377 -13.63038 -13.47822 -13.37313 -13.25634 -13.08983 -13.05656 -12.91125 -12.77780 -12.61306 -12.59421 -12.53382 -12.17687 -12.15491 -11.96004 -11.71336 -11.67753 -11.23409 -10.87791 -10.60884 -10.54176 -10.05803 -9.50802 -9.15205 -8.17555 -6.31651 -0.14410 0.17073 1.35263 1.38313 1.41172 1.49536 1.87554 2.17862 2.39049 2.72235 2.80817 2.95150 3.11746 3.20161 3.42223 3.52156 3.87560 3.98022 4.13199 4.14827 4.21954 4.28431 4.32941 4.37354 4.45313 4.52949 4.58712 4.62437 4.72722 4.76631 4.84601 4.86327 4.91350 4.97172 5.07335 5.12046 5.18742 5.30896 5.42347 5.57199 5.68448 5.90986 6.08723 6.11881 6.30528 6.37612 6.73067 6.78035 7.09450 7.34518 7.66338 8.88996 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008286 B = 0.004363 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3378.306557 B = 6416.472895 C = 8346.096309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.416 6.416 3 C 0.043 3.957 4 C 0.101 3.899 5 N -0.603 5.603 6 C 0.292 3.708 7 C -0.539 4.539 8 H 0.050 0.950 9 C 0.010 3.990 10 N -0.927 5.927 11 Si 0.963 3.037 12 H -0.263 1.263 13 H -0.282 1.282 14 H -0.276 1.276 15 C 0.683 3.317 16 O -0.574 6.574 17 N -0.649 5.649 18 C 0.363 3.637 19 C -0.012 4.012 20 N -0.382 5.382 21 C -0.004 4.004 22 C 0.290 3.710 23 O -0.296 6.296 24 C 0.076 3.924 25 C -0.151 4.151 26 C -0.140 4.140 27 N -0.526 5.526 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.041 0.959 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.121 0.879 35 H 0.032 0.968 36 H -0.011 1.011 37 H 0.265 0.735 38 H 0.432 0.568 39 H 0.215 0.785 40 H 0.201 0.799 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.032 0.968 44 H 0.080 0.920 45 H 0.061 0.939 46 H 0.082 0.918 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.163 18.164 -1.833 18.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.335 6.335 3 C -0.034 4.034 4 C -0.022 4.022 5 N -0.338 5.338 6 C 0.170 3.830 7 C -0.578 4.578 8 H 0.068 0.932 9 C -0.189 4.189 10 N -0.567 5.567 11 Si 0.788 3.212 12 H -0.188 1.188 13 H -0.207 1.207 14 H -0.201 1.201 15 C 0.384 3.616 16 O -0.448 6.448 17 N -0.302 5.302 18 C 0.127 3.873 19 C -0.177 4.177 20 N -0.095 5.095 21 C -0.166 4.166 22 C 0.107 3.893 23 O -0.202 6.202 24 C 0.020 3.980 25 C -0.209 4.209 26 C -0.197 4.197 27 N -0.261 5.261 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.116 0.884 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.138 0.862 35 H 0.050 0.950 36 H 0.007 0.993 37 H 0.074 0.926 38 H 0.274 0.726 39 H 0.231 0.769 40 H 0.217 0.783 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.051 0.949 44 H 0.099 0.901 45 H 0.081 0.919 46 H 0.101 0.899 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.728 17.396 -2.781 18.240 hybrid contribution 0.242 -1.010 0.653 1.227 sum -4.487 16.385 -2.128 17.121 Atomic orbital electron populations 1.22838 0.80086 1.03036 1.00742 1.88046 1.21059 1.28895 1.95513 1.23231 0.93340 0.84999 1.01860 1.21905 0.93268 1.00066 0.86962 1.47398 1.68065 1.07700 1.10644 1.18542 0.95333 0.73887 0.95223 1.21738 0.98347 0.92446 1.45292 0.93181 1.25778 1.01464 0.96424 0.95216 1.70066 1.36402 1.01354 1.48840 0.85489 0.79423 0.77448 0.78847 1.18802 1.20722 1.20144 1.16240 0.79583 0.81291 0.84471 1.90956 1.51563 1.72253 1.30068 1.42765 1.64987 1.04508 1.17958 1.19365 0.92114 0.89529 0.86311 1.23465 1.05741 0.87029 1.01454 1.68438 1.05236 1.37030 0.98841 1.23000 1.05526 0.89375 0.98693 1.21189 0.91211 0.91147 0.85753 1.86257 1.79426 1.24417 1.30076 1.22441 0.97528 0.77003 1.01077 1.22029 0.95671 1.01870 1.01289 1.21858 0.96501 1.02027 0.99313 1.67922 1.17272 1.39878 1.01057 0.90206 0.91731 0.94077 0.88408 0.93257 0.89746 0.86163 0.94984 0.99274 0.92585 0.72588 0.76888 0.78257 0.92017 0.91194 0.94870 0.90106 0.91946 0.89911 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.42 -13.52 9.53 -148.98 -1.42 -14.94 16 3 C 0.04 1.03 6.28 71.98 0.45 1.48 16 4 C 0.10 2.87 5.54 86.38 0.48 3.35 16 5 N -0.60 -25.29 2.42 -844.20 -2.04 -27.33 16 6 C 0.29 15.99 4.98 85.63 0.43 16.42 16 7 C -0.54 -31.48 9.39 25.60 0.24 -31.24 16 8 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 9 C 0.01 0.59 5.46 84.66 0.46 1.05 16 10 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 11 Si 0.96 45.74 29.54 68.60 2.03 47.76 16 12 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 14 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 15 C 0.68 28.86 8.24 179.06 1.47 30.33 16 16 O -0.57 -30.39 14.11 -3.98 -0.06 -30.44 16 17 N -0.65 -19.07 5.22 -321.95 -1.68 -20.76 16 18 C 0.36 10.97 7.42 132.84 0.99 11.95 16 19 C -0.01 -0.26 11.07 84.87 0.94 0.68 16 20 N -0.38 -9.00 10.48 -194.28 -2.04 -11.04 16 21 C 0.00 -0.09 11.16 84.82 0.95 0.86 16 22 C 0.29 9.15 7.46 84.75 0.63 9.78 16 23 O -0.30 -9.10 9.77 -89.93 -0.88 -9.98 16 24 C 0.08 2.45 3.12 30.59 0.10 2.55 16 25 C -0.15 -4.62 9.53 71.98 0.69 -3.93 16 26 C -0.14 -3.46 9.56 71.98 0.69 -2.77 16 27 N -0.53 -19.36 6.38 -305.34 -1.95 -21.31 16 28 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 2.67 8.07 -2.39 -0.02 2.65 16 34 H 0.12 2.23 6.44 -2.39 -0.02 2.21 16 35 H 0.03 1.84 7.11 -2.39 -0.02 1.82 16 36 H -0.01 -0.70 7.42 -2.39 -0.02 -0.72 16 37 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 38 H 0.43 8.11 6.52 -92.70 -0.60 7.50 16 39 H 0.21 2.50 8.06 -2.91 -0.02 2.47 16 40 H 0.20 3.60 8.06 -2.91 -0.02 3.58 16 41 H 0.06 2.59 6.89 -2.39 -0.02 2.57 16 42 H 0.07 2.12 8.14 -2.39 -0.02 2.11 16 43 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 46 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -84.22 396.52 2.38 -81.84 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.38 Total: 20.50 kcal Atomic # 6 Polarization: 32.67 SS G_CDS: 9.76 Total: 42.43 kcal Atomic # 7 Polarization: -129.75 SS G_CDS: -7.42 Total: -137.17 kcal Atomic # 8 Polarization: -53.01 SS G_CDS: -2.35 Total: -55.36 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -84.22 2.38 -81.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594135459.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.038 kcal (2) G-P(sol) polarization free energy of solvation -84.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds