Wall clock time and date at job start Tue Mar 31 2020 22:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 117.00465 * 2 1 4 4 O 1.20820 * 119.99764 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99947 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47356 * 59.99381 * 5 3 2 7 7 C 1.53002 * 109.46782 * 299.99561 * 5 3 2 8 8 N 1.46497 * 109.46852 * 180.02562 * 5 3 2 9 9 C 1.35846 * 126.06342 * 44.98937 * 8 5 3 10 10 C 1.35726 * 107.56402 * 180.02562 * 9 8 5 11 11 N 1.40844 * 126.07618 * 179.97438 * 10 9 8 12 12 C 1.34778 * 120.00118 * 180.02562 * 11 10 9 13 13 O 1.21597 * 119.99872 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00191 * 179.97438 * 12 11 10 15 15 C 1.46507 * 119.99791 * 0.02562 * 14 12 11 16 16 C 1.46495 * 120.00361 * 180.02562 * 14 12 11 17 17 H 1.09000 * 109.47378 * 0.02562 * 16 14 12 18 18 C 1.53009 * 109.47194 * 240.00449 * 16 14 12 19 19 C 1.50702 * 109.47571 * 120.00380 * 16 14 12 20 20 H 1.08002 * 119.99446 * 359.97438 * 19 16 14 21 21 C 1.37871 * 120.00072 * 180.02562 * 19 16 14 22 22 N 1.31516 * 119.99826 * 179.72119 * 21 19 16 23 23 Si 1.86800 * 120.00406 * 359.97438 * 21 19 16 24 24 H 1.48501 * 109.46758 * 269.72576 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72423 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72459 * 23 21 19 27 27 C 1.40243 * 107.84880 * 0.24779 * 10 9 8 28 28 N 1.30837 * 108.34073 * 359.58600 * 27 10 9 29 29 H 1.08992 * 109.47415 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46564 * 300.00322 * 1 2 3 31 31 H 1.08998 * 109.46799 * 59.99645 * 1 2 3 32 32 H 1.08995 * 109.46845 * 180.02562 * 6 5 3 33 33 H 1.08996 * 109.47123 * 300.00307 * 6 5 3 34 34 H 1.08999 * 109.46778 * 60.00057 * 6 5 3 35 35 H 1.09008 * 109.47014 * 299.99999 * 7 5 3 36 36 H 1.08996 * 109.47188 * 60.00005 * 7 5 3 37 37 H 1.08995 * 109.47072 * 180.02562 * 7 5 3 38 38 H 1.07997 * 126.21516 * 0.07028 * 9 8 5 39 39 H 0.96999 * 120.00052 * 359.97438 * 11 10 9 40 40 H 1.08993 * 109.47215 * 269.99521 * 15 14 12 41 41 H 1.09001 * 109.46606 * 30.00126 * 15 14 12 42 42 H 1.09004 * 109.46774 * 149.99850 * 15 14 12 43 43 H 1.08994 * 109.46846 * 179.97438 * 18 16 14 44 44 H 1.09001 * 109.46592 * 299.99497 * 18 16 14 45 45 H 1.08990 * 109.47127 * 59.99623 * 18 16 14 46 46 H 0.96999 * 120.00128 * 180.27192 * 22 21 19 47 47 H 1.07997 * 125.82476 * 179.75717 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5665 1.2747 -0.0006 6 6 4.1130 0.5812 -1.2501 7 6 4.1139 0.5809 1.2484 8 7 3.9819 2.6795 0.0002 9 6 3.4642 3.6661 0.7774 10 6 4.1208 4.8144 0.4730 11 7 3.8923 6.0785 1.0505 12 6 4.6192 7.1419 0.6539 13 8 5.4725 7.0099 -0.2022 14 7 4.4002 8.3516 1.2062 15 6 3.3725 8.5105 2.2382 16 6 5.1899 9.5076 0.7747 17 1 5.8980 9.1976 0.0063 18 6 5.9530 10.0794 1.9714 19 6 4.2712 10.5627 0.2143 20 1 3.2057 10.3891 0.1823 21 6 4.7910 11.7488 -0.2586 22 7 3.9898 12.6673 -0.7527 23 14 6.6340 12.0487 -0.2039 24 1 6.9917 12.6991 1.0823 25 1 7.3500 10.7528 -0.3193 26 1 7.0255 12.9325 -1.3312 27 6 5.0628 4.5197 -0.5234 28 7 4.9829 3.2437 -0.8010 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 5.2015 0.6378 -1.2502 33 1 3.8039 -0.4640 -1.2501 34 1 3.7230 1.0755 -2.1398 35 1 3.7245 1.0750 2.1386 36 1 3.8047 -0.4643 1.2484 37 1 5.2023 0.6382 1.2482 38 1 2.6744 3.5565 1.5057 39 1 3.2114 6.1839 1.7332 40 1 2.4202 8.7554 1.7679 41 1 3.2730 7.5806 2.7980 42 1 3.6599 9.3140 2.9165 43 1 6.5408 10.9392 1.6502 44 1 5.2445 10.3896 2.7394 45 1 6.6174 9.3164 2.3767 46 1 4.3559 13.5002 -1.0890 47 1 5.7404 5.2252 -0.9811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597100053.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:24 Heat of formation + Delta-G solvation = 0.874368 kcal Electronic energy + Delta-G solvation = -29971.309724 eV Core-core repulsion = 25772.156516 eV Total energy + Delta-G solvation = -4199.153208 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.72760 -40.66523 -39.43019 -37.10490 -36.20987 -35.50903 -34.18060 -32.57434 -30.55533 -30.37819 -28.55201 -28.15468 -27.67371 -26.27417 -25.07057 -24.43124 -22.38761 -22.21058 -20.62616 -20.07091 -18.84876 -17.81051 -17.74805 -17.59272 -16.87272 -16.69244 -16.23397 -15.74108 -15.22166 -15.06841 -14.61805 -14.43669 -14.26185 -14.00782 -13.84642 -13.23762 -13.08759 -13.07168 -12.89312 -12.75425 -12.64762 -12.54349 -12.50210 -12.31115 -12.20036 -11.88925 -11.83479 -11.61267 -11.29038 -11.17176 -10.90995 -10.65418 -10.60701 -10.40463 -10.10843 -9.61385 -9.42738 -9.29969 -9.20240 -8.60085 -7.87149 -7.33284 -6.10882 -4.11274 1.56975 1.62567 2.03884 2.49967 2.96932 3.24225 3.26531 3.40564 3.43708 3.95584 4.00753 4.13317 4.24505 4.38688 4.46779 4.64505 4.73476 4.78753 5.02069 5.06497 5.07882 5.20670 5.22002 5.28400 5.32613 5.53878 5.54516 5.64806 5.73927 5.79855 5.85945 5.95230 6.18832 6.27869 6.35316 6.47252 6.50947 6.86293 6.87382 6.91477 7.16776 7.22440 7.38439 7.57001 7.67248 7.82526 8.41817 8.57042 8.90776 9.16391 9.50348 11.01997 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023398 B = 0.002421 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.402503 B =11564.616308 C =11938.801401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.351 6.351 3 C 0.454 3.546 4 O -0.483 6.483 5 C 0.213 3.787 6 C -0.142 4.142 7 C -0.157 4.157 8 N -0.375 5.375 9 C 0.025 3.975 10 C 0.039 3.961 11 N -0.666 5.666 12 C 0.706 3.294 13 O -0.586 6.586 14 N -0.600 5.600 15 C 0.087 3.913 16 C 0.245 3.755 17 H 0.066 0.934 18 C -0.162 4.162 19 C -0.526 4.526 20 H 0.078 0.922 21 C 0.075 3.925 22 N -0.896 5.896 23 Si 0.883 3.117 24 H -0.278 1.278 25 H -0.262 1.262 26 H -0.295 1.295 27 C 0.064 3.936 28 N -0.283 5.283 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.168 0.832 39 H 0.403 0.597 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.078 0.922 43 H 0.051 0.949 44 H 0.055 0.945 45 H 0.034 0.966 46 H 0.265 0.735 47 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.510 -27.957 7.078 29.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.267 6.267 3 C 0.294 3.706 4 O -0.368 6.368 5 C 0.127 3.873 6 C -0.200 4.200 7 C -0.215 4.215 8 N -0.163 5.163 9 C -0.121 4.121 10 C -0.066 4.066 11 N -0.316 5.316 12 C 0.408 3.592 13 O -0.465 6.465 14 N -0.334 5.334 15 C -0.057 4.057 16 C 0.143 3.857 17 H 0.083 0.917 18 C -0.220 4.220 19 C -0.565 4.565 20 H 0.096 0.904 21 C -0.128 4.128 22 N -0.534 5.534 23 Si 0.713 3.287 24 H -0.205 1.205 25 H -0.186 1.186 26 H -0.222 1.222 27 C -0.124 4.124 28 N -0.103 5.103 29 H 0.124 0.876 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.186 0.814 39 H 0.239 0.761 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.053 0.947 46 H 0.075 0.925 47 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -3.735 -28.522 5.695 29.324 hybrid contribution -0.382 1.370 0.997 1.737 sum -4.117 -27.152 6.692 28.266 Atomic orbital electron populations 1.23361 0.75505 1.04060 1.02974 1.86468 1.23909 1.32302 1.83989 1.23698 0.91634 0.82113 0.73181 1.90763 1.66459 1.36044 1.43511 1.19835 0.86791 0.79531 1.01154 1.21942 1.03824 1.00140 0.94065 1.22291 1.03389 1.01156 0.94642 1.47869 1.30416 1.05788 1.32228 1.21563 1.01795 0.87605 1.01133 1.17477 1.02088 0.85243 1.01822 1.42150 1.40879 1.05184 1.43402 1.15763 0.81591 0.80165 0.81717 1.90721 1.37082 1.83633 1.35015 1.47104 1.38774 1.07109 1.40388 1.21540 0.92185 1.00697 0.91232 1.19222 0.91162 0.82517 0.92795 0.91665 1.22475 0.99587 0.99559 1.00373 1.21184 0.95306 0.99103 1.40892 0.90389 1.24862 0.97807 0.95695 0.94428 1.69877 1.35030 1.07482 1.40987 0.86915 0.86295 0.78693 0.76790 1.20474 1.18640 1.22195 1.24697 0.99194 0.92358 0.96195 1.77346 1.08042 1.09471 1.15482 0.87616 0.91597 0.91587 0.89057 0.89630 0.90991 0.91295 0.89160 0.89649 0.81445 0.76131 0.92743 0.93426 0.90378 0.93095 0.92592 0.94718 0.92474 0.77142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.26 16 2 O -0.35 -2.73 10.37 -39.26 -0.41 -3.13 16 3 C 0.45 4.65 6.49 36.01 0.23 4.88 16 4 O -0.48 -6.45 14.22 -18.75 -0.27 -6.72 16 5 C 0.21 2.06 1.18 -132.97 -0.16 1.90 16 6 C -0.14 -1.15 8.02 37.16 0.30 -0.86 16 7 C -0.16 -1.05 8.66 37.16 0.32 -0.73 16 8 N -0.38 -4.99 3.36 -49.40 -0.17 -5.16 16 9 C 0.02 0.34 9.67 -16.67 -0.16 0.18 16 10 C 0.04 0.64 6.90 -83.86 -0.58 0.06 16 11 N -0.67 -11.02 5.34 -14.39 -0.08 -11.10 16 12 C 0.71 14.61 8.25 -86.92 -0.72 13.89 16 13 O -0.59 -13.90 12.82 5.28 0.07 -13.83 16 14 N -0.60 -12.43 2.75 -181.00 -0.50 -12.93 16 15 C 0.09 1.41 9.44 59.85 0.57 1.97 16 16 C 0.25 5.94 2.23 -69.08 -0.15 5.78 16 17 H 0.07 1.75 5.95 -51.93 -0.31 1.44 16 18 C -0.16 -3.47 8.65 37.16 0.32 -3.15 16 19 C -0.53 -14.65 8.95 -34.44 -0.31 -14.96 16 20 H 0.08 2.34 7.89 -52.49 -0.41 1.93 16 21 C 0.07 2.14 5.45 -17.82 -0.10 2.05 16 22 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 23 Si 0.88 21.94 24.37 -169.99 -4.14 17.80 16 24 H -0.28 -6.58 6.88 56.52 0.39 -6.19 16 25 H -0.26 -6.41 6.52 56.52 0.37 -6.04 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 C 0.06 1.12 10.84 -17.22 -0.19 0.93 16 28 N -0.28 -4.44 11.65 30.70 0.36 -4.08 16 29 H 0.11 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.36 8.13 -51.93 -0.42 -0.06 16 31 H 0.07 0.40 8.13 -51.93 -0.42 -0.02 16 32 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 33 H 0.08 0.46 8.11 -51.93 -0.42 0.04 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 36 H 0.09 0.40 8.11 -51.93 -0.42 -0.02 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.17 1.95 7.49 -52.49 -0.39 1.56 16 39 H 0.40 5.37 6.56 -40.82 -0.27 5.10 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.58 6.36 -51.93 -0.33 0.25 16 42 H 0.08 1.24 6.43 -51.93 -0.33 0.91 16 43 H 0.05 1.14 3.28 -51.93 -0.17 0.97 16 44 H 0.06 1.10 6.66 -51.93 -0.35 0.76 16 45 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.21 4.03 5.91 -52.49 -0.31 3.72 16 LS Contribution 378.88 15.07 5.71 5.71 Total: -1.00 -35.77 378.88 -4.90 -40.67 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.70 Total: 5.99 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: 0.45 Total: 13.22 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: 0.39 Total: -59.71 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.61 Total: -23.68 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.14 Total: 17.80 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.77 -4.90 -40.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597100053.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.544 kcal (2) G-P(sol) polarization free energy of solvation -35.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds