Wall clock time and date at job start Tue Mar 31 2020 22:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.66438 * 2 1 4 4 C 1.50082 * 109.52583 * 239.92676 * 2 1 3 5 5 O 1.21275 * 118.50790 * 47.48910 * 4 2 1 6 6 N 1.33385 * 123.00453 * 227.66997 * 4 2 1 7 7 C 1.45646 * 124.59132 * 4.15999 * 6 4 2 8 8 C 1.52988 * 110.77501 * 338.08434 * 7 6 4 9 9 N 1.47041 * 109.57011 * 120.30108 * 2 1 3 10 10 C 1.34780 * 121.35359 * 342.58402 * 9 2 1 11 11 O 1.21349 * 119.99937 * 5.92186 * 10 9 2 12 12 C 1.49455 * 119.99951 * 185.92358 * 10 9 2 13 13 O 1.21350 * 119.99820 * 6.13176 * 12 10 9 14 14 N 1.34774 * 119.99818 * 186.12973 * 12 10 9 15 15 C 1.47080 * 120.88167 * 353.63006 * 14 12 10 16 16 C 1.53240 * 108.52116 * 231.15993 * 15 14 12 17 17 N 1.46900 * 109.33842 * 306.17164 * 16 15 14 18 18 C 1.46897 * 110.99622 * 187.25223 * 17 16 15 19 19 C 1.50704 * 109.47234 * 170.00066 * 18 17 16 20 20 H 1.07997 * 119.99511 * 359.97438 * 19 18 17 21 21 C 1.37873 * 119.99984 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00352 * 0.27548 * 21 19 18 23 23 Si 1.86801 * 119.99557 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47274 * 60.00025 * 23 21 19 25 25 H 1.48502 * 109.46935 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47435 * 299.99712 * 23 21 19 27 27 C 1.46899 * 111.27063 * 63.10628 * 17 16 15 28 28 C 1.47075 * 120.87769 * 173.60312 * 14 12 10 29 29 H 1.08999 * 109.46760 * 307.72182 * 1 2 3 30 30 H 1.08998 * 109.47306 * 67.72702 * 1 2 3 31 31 H 1.08993 * 109.46852 * 187.72555 * 1 2 3 32 32 H 0.96993 * 117.70430 * 184.14710 * 6 4 2 33 33 H 1.09000 * 109.21952 * 217.74769 * 7 6 4 34 34 H 1.09003 * 109.21644 * 98.40960 * 7 6 4 35 35 H 1.08997 * 109.72140 * 287.04917 * 8 7 6 36 36 H 1.08997 * 109.76156 * 166.41613 * 8 7 6 37 37 H 1.09007 * 109.62767 * 111.44797 * 15 14 12 38 38 H 1.08999 * 109.62871 * 350.87308 * 15 14 12 39 39 H 1.08998 * 109.49391 * 186.21090 * 16 15 14 40 40 H 1.09001 * 109.50876 * 66.14498 * 16 15 14 41 41 H 1.09001 * 109.47724 * 50.00023 * 18 17 16 42 42 H 1.09003 * 109.47102 * 290.00038 * 18 17 16 43 43 H 0.96999 * 119.99886 * 359.72280 * 22 21 19 44 44 H 1.08999 * 109.49405 * 56.84970 * 27 17 16 45 45 H 1.08996 * 109.49442 * 176.93685 * 27 17 16 46 46 H 1.08996 * 109.63014 * 248.54466 * 28 14 12 47 47 H 1.08998 * 109.63075 * 9.13220 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8968 1.0264 0.0000 4 6 2.0317 -0.7088 -1.2241 5 8 1.5464 -0.4230 -2.2981 6 7 2.9845 -1.6414 -1.1844 7 6 3.5927 -2.1507 0.0371 8 6 3.4236 -1.1528 1.1843 9 7 2.0226 -0.6990 1.1962 10 6 1.2227 -0.9206 2.2581 11 8 0.0441 -0.6379 2.1994 12 6 1.7874 -1.5144 3.5080 13 8 2.9834 -1.6938 3.6079 14 7 0.9683 -1.8504 4.5241 15 6 -0.4632 -1.5155 4.4822 16 6 -0.8349 -0.8030 5.7870 17 7 -0.4240 -1.6319 6.9280 18 6 -0.9144 -1.0673 8.1924 19 6 -0.6909 -2.0586 9.3054 20 1 -0.2309 -3.0126 9.0944 21 6 -1.0745 -1.7478 10.5927 22 7 -1.6405 -0.5885 10.8485 23 14 -0.7980 -2.9768 11.9720 24 1 0.6530 -3.2694 12.0908 25 1 -1.2937 -2.4060 13.2502 26 1 -1.5331 -4.2316 11.6717 27 6 1.0340 -1.8086 6.9608 28 6 1.4822 -2.5623 5.7041 29 1 -0.3633 0.6288 0.8129 30 1 -0.3634 0.3895 -0.9510 31 1 -0.3633 -1.0183 0.1381 32 1 3.2938 -2.0062 -2.0282 33 1 4.6552 -2.3221 -0.1357 34 1 3.1174 -3.0933 0.3086 35 1 4.0850 -0.3001 1.0306 36 1 3.6615 -1.6366 2.1316 37 1 -1.0502 -2.4287 4.3837 38 1 -0.6606 -0.8570 3.6363 39 1 -1.9129 -0.6456 5.8212 40 1 -0.3251 0.1593 5.8342 41 1 -1.9795 -0.8526 8.1057 42 1 -0.3748 -0.1462 8.4125 43 1 -1.7843 0.0495 10.1322 44 1 1.5180 -0.8324 6.9914 45 1 1.3113 -2.3805 7.8462 46 1 1.0822 -3.5761 5.7231 47 1 2.5710 -2.5959 5.6661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601446213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:41 Heat of formation + Delta-G solvation = -62.179546 kcal Electronic energy + Delta-G solvation = -30609.411523 eV Core-core repulsion = 26407.524092 eV Total energy + Delta-G solvation = -4201.887431 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.67802 -41.32362 -39.98320 -39.26794 -37.88058 -36.33329 -35.52574 -34.49938 -32.82535 -32.21874 -30.22685 -29.66900 -27.40314 -26.66375 -25.65413 -24.36421 -24.24725 -23.82077 -22.15029 -20.85636 -20.15890 -18.95790 -18.68541 -18.58888 -18.06495 -17.43892 -17.35988 -17.01720 -16.47347 -16.34006 -16.13922 -16.04733 -15.76854 -15.63959 -15.50278 -15.19471 -14.85271 -14.60053 -14.40708 -14.20578 -13.98186 -13.49804 -13.44614 -13.25815 -13.19805 -13.05454 -12.95510 -12.70261 -12.52262 -12.39435 -12.31130 -12.02411 -11.89252 -11.56042 -11.31958 -10.85842 -10.57808 -10.28094 -10.06388 -9.91615 -9.83203 -9.19739 -8.67745 -6.39059 0.12644 0.91036 1.35362 1.55697 1.63888 1.82880 1.90191 1.93531 2.23283 2.57186 2.86751 3.08465 3.17464 3.30139 3.67485 3.82747 3.84847 3.94492 3.98605 4.06781 4.12024 4.20341 4.27678 4.32424 4.47578 4.65549 4.68346 4.71379 4.74839 4.81269 4.83669 4.85412 4.88667 4.95329 5.00367 5.10831 5.25088 5.33978 5.65001 5.70693 5.75417 5.92078 6.06030 6.14053 6.29630 6.38786 6.46078 6.59202 6.71763 6.98056 7.41864 8.71156 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030346 B = 0.002384 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.462053 B =11741.098713 C =12389.857946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.130 3.870 3 H 0.128 0.872 4 C 0.515 3.485 5 O -0.581 6.581 6 N -0.707 5.707 7 C 0.097 3.903 8 C 0.037 3.963 9 N -0.579 5.579 10 C 0.521 3.479 11 O -0.507 6.507 12 C 0.510 3.490 13 O -0.524 6.524 14 N -0.573 5.573 15 C 0.076 3.924 16 C 0.040 3.960 17 N -0.536 5.536 18 C 0.195 3.805 19 C -0.598 4.598 20 H 0.061 0.939 21 C -0.038 4.038 22 N -0.939 5.939 23 Si 1.121 2.879 24 H -0.267 1.267 25 H -0.287 1.287 26 H -0.269 1.269 27 C 0.054 3.946 28 C 0.123 3.877 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.409 0.591 33 H 0.130 0.870 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.164 0.836 37 H 0.079 0.921 38 H 0.161 0.839 39 H 0.082 0.918 40 H 0.018 0.982 41 H 0.002 0.998 42 H -0.046 1.046 43 H 0.253 0.747 44 H 0.013 0.987 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.055 -3.376 -23.405 27.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.025 3.975 3 H 0.145 0.855 4 C 0.301 3.699 5 O -0.460 6.460 6 N -0.358 5.358 7 C -0.027 4.027 8 C -0.083 4.083 9 N -0.314 5.314 10 C 0.305 3.695 11 O -0.384 6.384 12 C 0.294 3.706 13 O -0.404 6.404 14 N -0.305 5.305 15 C -0.045 4.045 16 C -0.089 4.089 17 N -0.261 5.261 18 C 0.068 3.932 19 C -0.636 4.636 20 H 0.079 0.921 21 C -0.235 4.235 22 N -0.577 5.577 23 Si 0.942 3.058 24 H -0.192 1.192 25 H -0.213 1.213 26 H -0.194 1.194 27 C -0.074 4.074 28 C 0.001 3.999 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.245 0.755 33 H 0.148 0.852 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.180 0.820 37 H 0.098 0.902 38 H 0.177 0.823 39 H 0.100 0.900 40 H 0.036 0.964 41 H 0.020 0.980 42 H -0.029 1.029 43 H 0.062 0.938 44 H 0.031 0.969 45 H 0.103 0.897 46 H 0.109 0.891 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 12.317 -3.805 -22.164 25.641 hybrid contribution 0.319 1.369 -1.519 2.070 sum 12.636 -2.436 -23.683 26.953 Atomic orbital electron populations 1.22042 0.90069 1.03625 1.02985 1.21554 0.98170 0.97302 0.80503 0.85485 1.20247 0.79226 0.80019 0.90423 1.90780 1.58094 1.66080 1.31092 1.45444 1.38628 1.39925 1.11840 1.22010 1.01296 0.96752 0.82646 1.23693 0.79423 1.00498 1.04715 1.48141 1.13547 1.55618 1.14077 1.19978 0.85925 0.79303 0.84340 1.90442 1.15774 1.51799 1.80419 1.20091 0.86264 0.79402 0.84820 1.90333 1.14367 1.55666 1.80014 1.48210 1.10438 1.54007 1.17818 1.23276 0.78561 1.03019 0.99657 1.22533 1.01016 0.94004 0.91342 1.61981 1.11929 1.49182 1.03006 1.19529 0.93182 0.92687 0.87802 1.22270 1.43563 1.03570 0.94151 0.92113 1.27427 0.93012 1.00300 1.02791 1.70934 1.42379 1.08361 1.35994 0.82880 0.77574 0.72978 0.72371 1.19168 1.21281 1.19411 1.22313 0.87751 0.98569 0.98810 1.21926 1.00843 0.95594 0.81549 0.89192 0.91563 0.92689 0.75461 0.85201 0.90877 0.88357 0.82025 0.90246 0.82324 0.89951 0.96423 0.98033 1.02879 0.93819 0.96905 0.89713 0.89122 0.87271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 7.56 71.98 0.54 -1.97 16 2 C 0.13 2.18 3.66 43.95 0.16 2.34 16 3 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 4 C 0.52 9.34 7.34 87.68 0.64 9.98 16 5 O -0.58 -14.89 17.03 -3.02 -0.05 -14.94 16 6 N -0.71 -8.08 5.42 -467.50 -2.53 -10.62 16 7 C 0.10 0.68 7.34 86.54 0.63 1.32 16 8 C 0.04 0.41 6.31 86.23 0.54 0.95 16 9 N -0.58 -9.50 2.98 -801.41 -2.39 -11.89 16 10 C 0.52 10.99 7.57 87.27 0.66 11.66 16 11 O -0.51 -11.93 8.89 -3.24 -0.03 -11.96 16 12 C 0.51 12.02 7.66 87.27 0.67 12.69 16 13 O -0.52 -12.27 12.60 -3.25 -0.04 -12.31 16 14 N -0.57 -15.23 3.01 -819.50 -2.47 -17.69 16 15 C 0.08 2.09 6.31 86.35 0.54 2.63 16 16 C 0.04 1.38 5.62 86.38 0.49 1.87 16 17 N -0.54 -22.36 4.62 -899.80 -4.16 -26.51 16 18 C 0.19 10.12 4.04 85.56 0.35 10.46 16 19 C -0.60 -33.18 8.41 25.60 0.22 -32.96 16 20 H 0.06 3.28 7.13 -2.91 -0.02 3.26 16 21 C -0.04 -2.16 5.46 84.65 0.46 -1.70 16 22 N -0.94 -57.65 13.65 21.45 0.29 -57.35 16 23 Si 1.12 49.16 29.90 68.60 2.05 51.21 16 24 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 25 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 26 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 27 C 0.05 2.00 5.46 86.39 0.47 2.47 16 28 C 0.12 3.41 6.61 86.35 0.57 3.98 16 29 H 0.09 1.82 6.45 -2.39 -0.02 1.81 16 30 H 0.07 1.31 7.62 -2.39 -0.02 1.29 16 31 H 0.05 1.20 7.26 -2.39 -0.02 1.18 16 32 H 0.41 3.64 8.80 -92.71 -0.82 2.82 16 33 H 0.13 0.08 8.14 -2.39 -0.02 0.06 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.16 2.25 3.98 -66.41 -0.26 1.99 16 37 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 38 H 0.16 4.12 4.02 -70.25 -0.28 3.84 16 39 H 0.08 2.83 7.99 -2.39 -0.02 2.81 16 40 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.00 0.09 7.83 -2.39 -0.02 0.07 16 42 H -0.05 -2.62 8.00 -2.39 -0.02 -2.63 16 43 H 0.25 15.76 7.22 -92.71 -0.67 15.09 16 44 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.08 3.37 6.67 -2.39 -0.02 3.35 16 46 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 47 H 0.11 2.71 7.04 -2.39 -0.02 2.70 16 Total: -1.00 -71.78 363.89 -2.60 -74.38 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -0.23 Total: 13.98 kcal Atomic # 6 Polarization: 16.76 SS G_CDS: 6.95 Total: 23.71 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -11.25 Total: -124.07 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -0.12 Total: -39.21 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 2.05 Total: 51.21 kcal Total: -71.78 -2.60 -74.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601446213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.200 kcal (2) G-P(sol) polarization free energy of solvation -71.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds