Wall clock time and date at job start Tue Mar 31 2020 22:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.21461 * 2 1 4 4 C 1.52989 * 109.21295 * 240.66772 * 2 1 3 5 5 N 1.47269 * 108.18912 * 286.39311 * 4 2 1 6 6 C 1.34780 * 121.35668 * 118.52370 * 5 4 2 7 7 O 1.21351 * 119.99054 * 354.94995 * 6 5 4 8 8 C 1.49444 * 120.00166 * 174.95063 * 6 5 4 9 9 O 1.21341 * 120.00144 * 85.38915 * 8 6 5 10 10 N 1.34784 * 119.99810 * 265.38816 * 8 6 5 11 11 C 1.47075 * 120.87901 * 4.78466 * 10 8 6 12 12 C 1.53702 * 108.27526 * 128.75397 * 11 10 8 13 13 N 1.46896 * 109.25418 * 54.08260 * 12 11 10 14 14 C 1.46901 * 110.99925 * 172.60720 * 13 12 11 15 15 C 1.50699 * 109.47426 * 294.30164 * 14 13 12 16 16 H 1.08004 * 119.99443 * 359.97438 * 15 14 13 17 17 C 1.37869 * 120.00350 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00275 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00052 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47474 * 89.99998 * 19 17 15 21 21 H 1.48502 * 109.47214 * 210.00020 * 19 17 15 22 22 H 1.48497 * 109.47246 * 330.00040 * 19 17 15 23 23 C 1.46904 * 111.26875 * 296.75414 * 13 12 11 24 24 C 1.47073 * 120.87832 * 185.06016 * 10 8 6 25 25 C 1.47178 * 117.15566 * 298.30823 * 5 4 2 26 26 C 1.50437 * 108.82477 * 43.13650 * 25 5 4 27 27 O 1.21279 * 118.48873 * 167.08785 * 26 25 5 28 28 N 1.33383 * 123.01886 * 346.81641 * 26 25 5 29 29 H 1.09000 * 109.46632 * 300.61820 * 1 2 3 30 30 H 1.09003 * 109.46798 * 60.60980 * 1 2 3 31 31 H 1.09000 * 109.47100 * 180.61650 * 1 2 3 32 32 H 1.08998 * 109.72077 * 46.06988 * 4 2 1 33 33 H 1.09003 * 109.72053 * 166.67721 * 4 2 1 34 34 H 1.09006 * 109.62893 * 248.52124 * 11 10 8 35 35 H 1.08999 * 109.63131 * 9.10327 * 11 10 8 36 36 H 1.09001 * 109.64836 * 294.07791 * 12 11 10 37 37 H 1.09003 * 109.41709 * 173.94186 * 12 11 10 38 38 H 1.09003 * 109.46998 * 54.29642 * 14 13 12 39 39 H 1.09001 * 109.47506 * 174.29666 * 14 13 12 40 40 H 0.96993 * 120.00165 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.49072 * 303.14810 * 23 13 12 42 42 H 1.08998 * 109.49424 * 183.06717 * 23 13 12 43 43 H 1.08997 * 109.63475 * 350.89828 * 24 10 8 44 44 H 1.09001 * 109.62680 * 111.28531 * 24 10 8 45 45 H 1.09002 * 109.76752 * 283.23742 * 25 5 4 46 46 H 1.09005 * 109.43942 * 162.84147 * 25 5 4 47 47 H 0.96994 * 117.70713 * 184.59900 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8887 1.0293 0.0000 4 6 2.0335 -0.7077 -1.2595 5 7 1.8119 -2.1542 -1.0937 6 6 1.0078 -2.8408 -1.9294 7 8 0.3776 -2.2534 -2.7840 8 6 0.8924 -4.3255 -1.8036 9 8 0.1030 -4.8084 -1.0187 10 7 1.6652 -5.1281 -2.5621 11 6 2.7005 -4.5666 -3.4429 12 6 4.0234 -5.2950 -3.1572 13 7 3.8167 -6.7435 -3.2874 14 6 5.0916 -7.4676 -3.1953 15 6 5.9569 -7.1138 -4.3772 16 1 5.5956 -6.4207 -5.1226 17 6 7.2095 -7.6749 -4.5071 18 7 7.9645 -7.3665 -5.5389 19 14 7.8345 -8.8731 -3.2176 20 1 7.4483 -10.2556 -3.5979 21 1 9.3140 -8.7788 -3.1299 22 1 7.2383 -8.5374 -1.8996 23 6 2.8578 -7.2368 -2.2898 24 6 1.4913 -6.5883 -2.5353 25 6 2.5095 -2.8173 0.0198 26 6 2.4103 -1.9463 1.2423 27 8 2.7135 -2.4205 2.3166 28 7 2.0094 -0.6749 1.1983 29 1 -0.3632 0.5234 0.8844 30 1 -0.3633 0.5044 -0.8954 31 1 -0.3633 -1.0276 0.0111 32 1 1.4823 -0.3484 -2.1285 33 1 3.0974 -0.5108 -1.3916 34 1 2.4149 -4.7147 -4.4844 35 1 2.8160 -3.5019 -3.2399 36 1 4.3575 -5.0648 -2.1455 37 1 4.7783 -4.9696 -3.8730 38 1 5.6027 -7.1876 -2.2741 39 1 4.9007 -8.5408 -3.1930 40 1 8.8459 -7.7609 -5.6301 41 1 3.2082 -6.9795 -1.2902 42 1 2.7674 -8.3196 -2.3764 43 1 0.8070 -6.8610 -1.7320 44 1 1.0885 -6.9267 -3.4900 45 1 3.5580 -2.9661 -0.2384 46 1 2.0406 -3.7810 0.2191 47 1 2.0390 -0.1640 2.0223 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601531470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:33 Heat of formation + Delta-G solvation = -70.087821 kcal Electronic energy + Delta-G solvation = -30953.365809 eV Core-core repulsion = 26751.135450 eV Total energy + Delta-G solvation = -4202.230360 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.55986 -40.31859 -38.99083 -37.76517 -37.15411 -35.05698 -34.73301 -32.49932 -31.68090 -31.10715 -29.08159 -28.41280 -27.83026 -26.07875 -24.21593 -23.49660 -22.95212 -21.57641 -20.68049 -19.70045 -19.25067 -18.07919 -17.87159 -17.16816 -16.90721 -16.87818 -16.18381 -16.03547 -15.21279 -15.11191 -14.90137 -14.78030 -14.67379 -14.42512 -14.22641 -14.10041 -13.72788 -13.61791 -13.30598 -13.03988 -12.82180 -12.52875 -12.49487 -12.37640 -12.02404 -11.89361 -11.77628 -11.68782 -11.33651 -11.21413 -10.94493 -10.69640 -10.65368 -10.43157 -9.99471 -9.79754 -9.65105 -9.43240 -9.28532 -8.84750 -8.66743 -7.60328 -6.15330 -4.14096 1.72136 1.80694 2.11703 2.30517 2.68855 2.98560 3.21902 3.30019 3.31262 3.79909 3.91044 4.05621 4.33047 4.41850 4.46017 4.52918 4.68386 4.90179 4.95636 5.02253 5.10905 5.12207 5.18836 5.24411 5.27314 5.30506 5.40579 5.53098 5.56708 5.58458 5.76041 5.76872 6.02304 6.19097 6.21151 6.27604 6.34615 6.47827 6.68910 6.78236 6.81158 7.03814 7.34364 7.43373 7.63780 7.68659 7.69646 7.83057 8.51393 8.91170 9.45806 10.97327 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014945 B = 0.003101 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.092218 B = 9028.353403 C = 9528.254563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.123 3.877 3 H 0.103 0.897 4 C 0.097 3.903 5 N -0.605 5.605 6 C 0.530 3.470 7 O -0.500 6.500 8 C 0.511 3.489 9 O -0.520 6.520 10 N -0.586 5.586 11 C 0.108 3.892 12 C 0.052 3.948 13 N -0.527 5.527 14 C 0.163 3.837 15 C -0.514 4.514 16 H 0.082 0.918 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.874 3.126 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.268 1.268 23 C 0.038 3.962 24 C 0.116 3.884 25 C 0.092 3.908 26 C 0.519 3.481 27 O -0.540 6.540 28 N -0.712 5.712 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.118 0.882 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.028 0.972 37 H 0.107 0.893 38 H -0.010 1.010 39 H 0.027 0.973 40 H 0.265 0.735 41 H 0.031 0.969 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.117 0.883 46 H 0.121 0.879 47 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.358 15.298 9.910 22.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.017 3.983 3 H 0.121 0.879 4 C -0.025 4.025 5 N -0.343 5.343 6 C 0.313 3.687 7 O -0.373 6.373 8 C 0.293 3.707 9 O -0.396 6.396 10 N -0.320 5.320 11 C -0.015 4.015 12 C -0.077 4.077 13 N -0.251 5.251 14 C 0.037 3.963 15 C -0.552 4.552 16 H 0.100 0.900 17 C -0.132 4.132 18 N -0.536 5.536 19 Si 0.701 3.299 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.193 1.193 23 C -0.091 4.091 24 C -0.006 4.006 25 C -0.034 4.034 26 C 0.305 3.695 27 O -0.416 6.416 28 N -0.365 5.365 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.136 0.864 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.046 0.954 37 H 0.125 0.875 38 H 0.008 0.992 39 H 0.045 0.955 40 H 0.075 0.925 41 H 0.049 0.951 42 H 0.105 0.895 43 H 0.112 0.888 44 H 0.101 0.899 45 H 0.134 0.866 46 H 0.139 0.861 47 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -12.999 14.812 9.638 21.938 hybrid contribution 0.851 -0.295 1.625 1.858 sum -12.149 14.517 11.264 22.027 Atomic orbital electron populations 1.22269 0.94213 1.03252 1.02844 1.21381 0.95397 0.96926 0.84610 0.87907 1.22188 1.02904 0.78734 0.98672 1.48181 1.46351 1.09510 1.30292 1.20313 0.78898 0.88429 0.81048 1.90813 1.42915 1.69281 1.34289 1.20054 0.82089 0.87017 0.81539 1.90814 1.37320 1.74881 1.36578 1.48300 1.34144 1.07759 1.41833 1.22230 0.87451 0.96790 0.95016 1.22447 0.95325 0.89198 1.00730 1.61898 1.13172 1.02947 1.47105 1.20185 0.85524 0.93748 0.96822 1.20983 0.98898 1.28013 1.07348 0.90034 1.24884 0.96608 0.96313 0.95347 1.69880 1.10568 1.44099 1.29039 0.86883 0.78267 0.82101 0.82622 1.20075 1.21157 1.19282 1.22470 0.92253 1.00196 0.94193 1.21925 0.98081 0.77015 1.03541 1.22070 1.00794 0.97284 0.83203 1.20076 0.76456 0.82425 0.90581 1.90836 1.49500 1.71857 1.29391 1.45466 1.65830 1.12092 1.13089 0.91893 0.90725 0.92119 0.86405 0.89059 0.89391 0.90604 0.95410 0.87466 0.99186 0.95462 0.92537 0.95087 0.89506 0.88824 0.89915 0.86572 0.86084 0.76198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 9.37 37.16 0.35 -0.72 16 2 C 0.12 0.64 3.87 -68.39 -0.26 0.38 16 3 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 4 C 0.10 0.62 5.88 -3.63 -0.02 0.60 16 5 N -0.61 -5.82 2.75 -174.55 -0.48 -6.30 16 6 C 0.53 6.73 5.56 -11.59 -0.06 6.66 16 7 O -0.50 -7.25 16.59 5.50 0.09 -7.16 16 8 C 0.51 7.34 5.82 -11.58 -0.07 7.27 16 9 O -0.52 -8.70 16.29 5.50 0.09 -8.61 16 10 N -0.59 -8.08 3.00 -172.70 -0.52 -8.60 16 11 C 0.11 1.43 6.51 -3.36 -0.02 1.41 16 12 C 0.05 0.84 5.47 -3.46 -0.02 0.82 16 13 N -0.53 -9.71 4.62 -235.46 -1.09 -10.80 16 14 C 0.16 3.62 3.79 -4.98 -0.02 3.60 16 15 C -0.51 -13.53 8.96 -34.44 -0.31 -13.84 16 16 H 0.08 2.32 7.37 -52.48 -0.39 1.93 16 17 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 18 N -0.90 -26.21 13.96 55.43 0.77 -25.44 16 19 Si 0.87 20.49 27.47 -169.99 -4.67 15.82 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 23 C 0.04 0.58 5.62 -3.70 -0.02 0.56 16 24 C 0.12 1.57 6.61 -3.61 -0.02 1.55 16 25 C 0.09 0.91 6.38 -4.95 -0.03 0.88 16 26 C 0.52 5.50 7.84 -11.73 -0.09 5.41 16 27 O -0.54 -7.86 17.80 5.56 0.10 -7.76 16 28 N -0.71 -5.16 5.00 -54.78 -0.27 -5.43 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.58 7.99 -51.93 -0.42 0.16 16 32 H 0.12 0.77 7.00 -51.93 -0.36 0.41 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.08 0.87 6.44 -51.93 -0.33 0.54 16 36 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.11 1.94 6.67 -51.93 -0.35 1.59 16 38 H -0.01 -0.22 7.18 -51.93 -0.37 -0.59 16 39 H 0.03 0.61 7.40 -51.93 -0.38 0.23 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.09 1.25 7.99 -51.93 -0.41 0.83 16 43 H 0.09 1.23 7.04 -51.93 -0.37 0.86 16 44 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.12 1.41 6.51 -51.93 -0.34 1.07 16 47 H 0.40 2.43 8.80 -40.82 -0.36 2.07 16 LS Contribution 377.36 15.07 5.69 5.69 Total: -1.00 -34.25 377.36 -8.05 -42.29 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -7.05 Total: -0.12 kcal Atomic # 6 Polarization: 17.14 SS G_CDS: -0.70 Total: 16.43 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -1.59 Total: -56.57 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: 0.28 Total: -23.54 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.67 Total: 15.82 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.25 -8.05 -42.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601531470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.797 kcal (2) G-P(sol) polarization free energy of solvation -34.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds