Wall clock time and date at job start Tue Mar 31 2020 22:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99621 * 2 1 4 4 C 1.52995 * 109.46990 * 60.00603 * 3 2 1 5 5 C 1.52999 * 109.47022 * 300.00102 * 3 2 1 6 6 C 1.53003 * 109.46735 * 180.02562 * 3 2 1 7 7 C 1.53002 * 109.47148 * 299.84553 * 6 3 2 8 8 H 1.08998 * 109.47184 * 305.91261 * 7 6 3 9 9 C 1.53003 * 109.46995 * 185.90893 * 7 6 3 10 10 N 1.46504 * 109.46839 * 65.91169 * 7 6 3 11 11 C 1.34779 * 119.99835 * 204.99542 * 10 7 6 12 12 O 1.21362 * 119.99852 * 0.02562 * 11 10 7 13 13 C 1.49305 * 120.00013 * 179.97438 * 11 10 7 14 14 O 1.21406 * 120.00089 * 0.02562 * 13 11 10 15 15 N 1.34771 * 120.00239 * 180.02562 * 13 11 10 16 16 C 1.40297 * 120.00420 * 180.02562 * 15 13 11 17 17 C 1.40721 * 126.09597 * 359.97438 * 16 15 13 18 18 N 1.30881 * 108.37406 * 179.77526 * 17 16 15 19 19 N 1.40059 * 108.43519 * 0.38137 * 18 17 16 20 20 C 1.37292 * 126.05741 * 179.87891 * 19 18 17 21 21 H 1.08006 * 120.00212 * 179.68843 * 20 19 18 22 22 C 1.39010 * 120.00085 * 359.96724 * 20 19 18 23 23 N 1.31281 * 119.99458 * 359.72258 * 22 20 19 24 24 Si 1.86800 * 120.00366 * 179.72769 * 22 20 19 25 25 H 1.48498 * 109.47019 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47254 * 119.99613 * 24 22 20 27 27 H 1.48495 * 109.46795 * 239.99875 * 24 22 20 28 28 C 1.35782 * 126.10055 * 180.02562 * 16 15 13 29 29 H 1.08998 * 109.46947 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47106 * 299.99594 * 1 2 3 31 31 H 1.08999 * 109.47117 * 59.99868 * 1 2 3 32 32 H 1.09002 * 109.46749 * 179.97438 * 4 3 2 33 33 H 1.09004 * 109.47115 * 299.98866 * 4 3 2 34 34 H 1.08996 * 109.47330 * 59.99751 * 4 3 2 35 35 H 1.09001 * 109.47297 * 305.78050 * 5 3 2 36 36 H 1.09000 * 109.47110 * 65.78872 * 5 3 2 37 37 H 1.09001 * 109.46688 * 185.78701 * 5 3 2 38 38 H 1.09002 * 109.46845 * 179.84677 * 6 3 2 39 39 H 1.08998 * 109.47040 * 59.84927 * 6 3 2 40 40 H 1.08998 * 109.47456 * 300.00202 * 9 7 6 41 41 H 1.08997 * 109.46511 * 60.00410 * 9 7 6 42 42 H 1.08997 * 109.46655 * 180.02562 * 9 7 6 43 43 H 0.96998 * 119.99947 * 25.00608 * 10 7 6 44 44 H 0.97011 * 119.99746 * 0.02562 * 15 13 11 45 45 H 1.07997 * 125.81675 * 0.02562 * 17 16 15 46 46 H 0.97007 * 120.00174 * 180.02562 * 23 22 20 47 47 H 1.07997 * 126.25267 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5588 2.0647 1.2493 5 6 1.5586 2.0647 -1.2492 6 6 3.5354 1.1847 -0.0006 7 6 3.9877 0.4286 1.2502 8 1 3.5779 0.9137 2.1361 9 6 5.5158 0.4355 1.3257 10 7 3.5082 -0.9542 1.1849 11 6 3.3265 -1.6588 2.3195 12 8 3.5597 -1.1475 3.3951 13 6 2.8373 -3.0678 2.2530 14 8 2.6037 -3.5792 1.1769 15 7 2.6552 -3.7722 3.3874 16 6 2.1960 -5.0964 3.3250 17 6 1.8868 -5.8123 2.1536 18 7 1.4967 -7.0140 2.4953 19 7 1.5324 -7.1107 3.8921 20 6 1.1926 -8.2144 4.6347 21 1 1.2617 -8.1827 5.7120 22 6 0.7650 -9.3747 3.9996 23 7 0.6810 -9.4132 2.6900 24 14 0.3099 -10.8788 5.0094 25 1 0.4902 -10.5792 6.4526 26 1 -1.1077 -11.2380 4.7513 27 1 1.1860 -12.0152 4.6270 28 6 1.9698 -5.9155 4.3840 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.0025 3.0603 1.2495 33 1 0.4722 2.1508 1.2493 34 1 1.8805 1.5237 2.1392 35 1 1.7891 1.4746 -2.1362 36 1 0.4841 2.2407 -1.1989 37 1 2.0811 3.0199 -1.3025 38 1 3.9787 2.1805 -0.0034 39 1 3.8565 0.6416 -0.8895 40 1 5.9256 -0.0497 0.4398 41 1 5.8724 1.4643 1.3743 42 1 5.8380 -0.1036 2.2166 43 1 3.3217 -1.3628 0.3252 44 1 2.8415 -3.3635 4.2473 45 1 1.9627 -5.4358 1.1442 46 1 0.3823 -10.2227 2.2467 47 1 2.1107 -5.6667 5.4254 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746419401.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:49 Heat of formation + Delta-G solvation = -32.192589 kcal Electronic energy + Delta-G solvation = -29932.333073 eV Core-core repulsion = 25731.745974 eV Total energy + Delta-G solvation = -4200.587099 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.50675 -39.73198 -39.09241 -37.80629 -35.99832 -34.31659 -33.30828 -33.00496 -30.86452 -30.26322 -27.97281 -27.84396 -27.76421 -26.14307 -25.41419 -24.03544 -21.55772 -20.89834 -20.16790 -20.08848 -19.38791 -18.06121 -17.38565 -16.62593 -16.36130 -15.94261 -15.57030 -15.45223 -15.23217 -15.06541 -15.01954 -14.07255 -13.97114 -13.77081 -13.61402 -13.47360 -13.21628 -13.03530 -12.93355 -12.73491 -12.53021 -12.33879 -12.30005 -12.11221 -11.79378 -11.70729 -11.49812 -11.48387 -11.27935 -11.13354 -10.96917 -10.74600 -10.56964 -10.50770 -10.21151 -9.71862 -9.18869 -9.03431 -8.96453 -8.81638 -8.07808 -6.71356 -6.56904 -4.23513 1.83872 2.78110 2.95305 3.06118 3.11652 3.43675 3.56853 3.80633 3.81290 4.12472 4.26516 4.43365 4.45773 4.65175 4.71349 4.92632 4.99541 5.01721 5.12192 5.13826 5.17496 5.19934 5.27177 5.32278 5.38105 5.45968 5.49133 5.55688 5.63945 5.74074 5.79698 5.84264 6.02180 6.07809 6.25282 6.42446 6.48099 6.83754 6.93755 7.02508 7.08999 7.21131 7.47104 7.84028 8.02593 8.24421 8.25292 8.58223 8.77308 9.36164 9.65109 10.39028 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022582 B = 0.002336 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.608332 B =11985.830762 C =12580.026709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.367 6.367 3 C 0.108 3.892 4 C -0.183 4.183 5 C -0.177 4.177 6 C -0.114 4.114 7 C 0.141 3.859 8 H 0.093 0.907 9 C -0.166 4.166 10 N -0.679 5.679 11 C 0.517 3.483 12 O -0.540 6.540 13 C 0.485 3.515 14 O -0.520 6.520 15 N -0.588 5.588 16 C -0.065 4.065 17 C -0.028 4.028 18 N -0.260 5.260 19 N -0.140 5.140 20 C -0.321 4.321 21 H 0.118 0.882 22 C 0.046 3.954 23 N -0.768 5.768 24 Si 0.935 3.065 25 H -0.263 1.263 26 H -0.274 1.274 27 H -0.274 1.274 28 C -0.079 4.079 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.416 0.584 44 H 0.408 0.592 45 H 0.178 0.822 46 H 0.275 0.725 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.491 22.104 -4.722 22.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.286 6.286 3 C 0.068 3.932 4 C -0.240 4.240 5 C -0.234 4.234 6 C -0.152 4.152 7 C 0.037 3.963 8 H 0.111 0.889 9 C -0.225 4.225 10 N -0.332 5.332 11 C 0.298 3.702 12 O -0.417 6.417 13 C 0.266 3.734 14 O -0.397 6.397 15 N -0.231 5.231 16 C -0.171 4.171 17 C -0.204 4.204 18 N -0.091 5.091 19 N 0.093 4.907 20 C -0.454 4.454 21 H 0.135 0.865 22 C -0.171 4.171 23 N -0.395 5.395 24 Si 0.759 3.241 25 H -0.187 1.187 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.230 4.230 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.253 0.747 44 H 0.243 0.757 45 H 0.194 0.806 46 H 0.085 0.915 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.129 20.657 -5.347 21.566 hybrid contribution -0.173 0.496 0.827 0.980 sum 2.956 21.153 -4.520 21.832 Atomic orbital electron populations 1.22773 0.81445 1.03080 0.99609 1.88028 1.19473 1.26222 1.94901 1.21489 0.93392 0.84090 0.94208 1.22501 1.01947 1.00760 0.98782 1.22410 1.01878 1.00805 0.98334 1.21968 0.93063 1.01567 0.98615 1.21029 0.94108 0.82063 0.99103 0.88940 1.22215 0.95072 1.02267 1.02901 1.45651 1.64991 1.13020 1.09562 1.20180 0.78220 0.87216 0.84535 1.90700 1.51106 1.71322 1.28594 1.19744 0.82098 0.86660 0.84900 1.90648 1.50649 1.70117 1.28292 1.42167 1.61096 1.11315 1.08556 1.17261 1.19835 0.85411 0.94622 1.24148 1.05582 0.92215 0.98435 1.78250 1.25072 1.16726 0.89079 1.44555 1.34858 1.06980 1.04335 1.19949 1.45770 0.88524 0.91138 0.86468 1.25661 0.95852 0.99657 0.95980 1.70222 1.33669 1.27773 1.07814 0.85751 0.78625 0.79986 0.79718 1.18652 1.19899 1.19902 1.21306 1.15714 0.88864 0.97106 0.89400 0.94079 0.94121 0.91564 0.92149 0.91154 0.91570 0.92196 0.91598 0.88864 0.90163 0.92199 0.91617 0.91726 0.74652 0.75737 0.80565 0.91475 0.83431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.21 101.05 1.03 1.30 16 2 O -0.37 -4.06 8.00 -35.23 -0.28 -4.35 16 3 C 0.11 0.89 0.82 -90.62 -0.07 0.81 16 4 C -0.18 -1.46 7.91 37.16 0.29 -1.16 16 5 C -0.18 -1.18 8.07 37.16 0.30 -0.88 16 6 C -0.11 -0.84 4.11 -26.73 -0.11 -0.95 16 7 C 0.14 1.38 2.36 -67.93 -0.16 1.22 16 8 H 0.09 1.00 5.56 -51.93 -0.29 0.71 16 9 C -0.17 -1.46 9.48 37.16 0.35 -1.11 16 10 N -0.68 -8.64 3.70 -54.28 -0.20 -8.84 16 11 C 0.52 8.23 7.85 -11.65 -0.09 8.14 16 12 O -0.54 -9.19 16.14 5.49 0.09 -9.10 16 13 C 0.49 9.17 7.85 -11.66 -0.09 9.08 16 14 O -0.52 -10.94 13.62 5.45 0.07 -10.86 16 15 N -0.59 -11.52 5.45 -10.46 -0.06 -11.58 16 16 C -0.07 -1.55 6.90 -83.92 -0.58 -2.13 16 17 C -0.03 -0.74 10.85 -17.02 -0.18 -0.93 16 18 N -0.26 -7.57 10.39 30.81 0.32 -7.25 16 19 N -0.14 -3.87 3.73 -11.40 -0.04 -3.91 16 20 C -0.32 -8.52 10.25 -14.82 -0.15 -8.67 16 21 H 0.12 2.78 7.83 -52.48 -0.41 2.37 16 22 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 23 N -0.77 -21.40 11.81 55.50 0.66 -20.75 16 24 Si 0.94 18.92 29.55 -169.99 -5.02 13.90 16 25 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 26 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 27 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 28 C -0.08 -1.89 11.50 -16.38 -0.19 -2.07 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.04 0.39 6.42 -51.93 -0.33 0.05 16 31 H 0.04 0.33 6.55 -51.93 -0.34 -0.01 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.47 6.54 -51.93 -0.34 0.13 16 34 H 0.07 0.69 6.30 -51.93 -0.33 0.36 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.39 6.86 -51.93 -0.36 0.04 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.42 5.37 7.26 -40.82 -0.30 5.07 16 44 H 0.41 6.96 8.29 -40.82 -0.34 6.63 16 45 H 0.18 4.54 5.92 -52.49 -0.31 4.23 16 46 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 47 H 0.15 2.98 8.06 -52.49 -0.42 2.56 16 LS Contribution 384.54 15.07 5.79 5.79 Total: -1.00 -33.05 384.54 -5.13 -38.18 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -6.70 Total: 15.00 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 0.25 Total: 3.76 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: 0.68 Total: -52.33 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.12 Total: -24.31 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.90 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.05 -5.13 -38.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746419401.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.985 kcal (2) G-P(sol) polarization free energy of solvation -33.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds