Wall clock time and date at job start Tue Mar 31 2020 22:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99621 * 2 1 4 4 C 1.52995 * 109.46990 * 60.00603 * 3 2 1 5 5 C 1.52999 * 109.47022 * 300.00102 * 3 2 1 6 6 C 1.53003 * 109.46735 * 180.02562 * 3 2 1 7 7 C 1.53002 * 109.47148 * 299.84553 * 6 3 2 8 8 H 1.08998 * 109.47184 * 305.91261 * 7 6 3 9 9 C 1.53003 * 109.46995 * 185.90893 * 7 6 3 10 10 N 1.46504 * 109.46839 * 65.91169 * 7 6 3 11 11 C 1.34779 * 119.99835 * 204.99542 * 10 7 6 12 12 O 1.21362 * 119.99852 * 0.02562 * 11 10 7 13 13 C 1.49305 * 120.00013 * 179.97438 * 11 10 7 14 14 O 1.21406 * 120.00089 * 0.02562 * 13 11 10 15 15 N 1.34771 * 120.00239 * 180.02562 * 13 11 10 16 16 C 1.40297 * 120.00420 * 180.02562 * 15 13 11 17 17 C 1.40721 * 126.09597 * 359.97438 * 16 15 13 18 18 N 1.30881 * 108.37406 * 179.77526 * 17 16 15 19 19 N 1.40059 * 108.43519 * 0.38137 * 18 17 16 20 20 C 1.37292 * 126.05741 * 179.87891 * 19 18 17 21 21 H 1.08006 * 120.00212 * 179.68843 * 20 19 18 22 22 C 1.39010 * 120.00085 * 359.96724 * 20 19 18 23 23 N 1.31281 * 119.99458 * 359.72258 * 22 20 19 24 24 Si 1.86800 * 120.00366 * 179.72769 * 22 20 19 25 25 H 1.48498 * 109.47019 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47254 * 119.99613 * 24 22 20 27 27 H 1.48495 * 109.46795 * 239.99875 * 24 22 20 28 28 C 1.35782 * 126.10055 * 180.02562 * 16 15 13 29 29 H 1.08998 * 109.46947 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47106 * 299.99594 * 1 2 3 31 31 H 1.08999 * 109.47117 * 59.99868 * 1 2 3 32 32 H 1.09002 * 109.46749 * 179.97438 * 4 3 2 33 33 H 1.09004 * 109.47115 * 299.98866 * 4 3 2 34 34 H 1.08996 * 109.47330 * 59.99751 * 4 3 2 35 35 H 1.09001 * 109.47297 * 305.78050 * 5 3 2 36 36 H 1.09000 * 109.47110 * 65.78872 * 5 3 2 37 37 H 1.09001 * 109.46688 * 185.78701 * 5 3 2 38 38 H 1.09002 * 109.46845 * 179.84677 * 6 3 2 39 39 H 1.08998 * 109.47040 * 59.84927 * 6 3 2 40 40 H 1.08998 * 109.47456 * 300.00202 * 9 7 6 41 41 H 1.08997 * 109.46511 * 60.00410 * 9 7 6 42 42 H 1.08997 * 109.46655 * 180.02562 * 9 7 6 43 43 H 0.96998 * 119.99947 * 25.00608 * 10 7 6 44 44 H 0.97011 * 119.99746 * 0.02562 * 15 13 11 45 45 H 1.07997 * 125.81675 * 0.02562 * 17 16 15 46 46 H 0.97007 * 120.00174 * 180.02562 * 23 22 20 47 47 H 1.07997 * 126.25267 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5588 2.0647 1.2493 5 6 1.5586 2.0647 -1.2492 6 6 3.5354 1.1847 -0.0006 7 6 3.9877 0.4286 1.2502 8 1 3.5779 0.9137 2.1361 9 6 5.5158 0.4355 1.3257 10 7 3.5082 -0.9542 1.1849 11 6 3.3265 -1.6588 2.3195 12 8 3.5597 -1.1475 3.3951 13 6 2.8373 -3.0678 2.2530 14 8 2.6037 -3.5792 1.1769 15 7 2.6552 -3.7722 3.3874 16 6 2.1960 -5.0964 3.3250 17 6 1.8868 -5.8123 2.1536 18 7 1.4967 -7.0140 2.4953 19 7 1.5324 -7.1107 3.8921 20 6 1.1926 -8.2144 4.6347 21 1 1.2617 -8.1827 5.7120 22 6 0.7650 -9.3747 3.9996 23 7 0.6810 -9.4132 2.6900 24 14 0.3099 -10.8788 5.0094 25 1 0.4902 -10.5792 6.4526 26 1 -1.1077 -11.2380 4.7513 27 1 1.1860 -12.0152 4.6270 28 6 1.9698 -5.9155 4.3840 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.0025 3.0603 1.2495 33 1 0.4722 2.1508 1.2493 34 1 1.8805 1.5237 2.1392 35 1 1.7891 1.4746 -2.1362 36 1 0.4841 2.2407 -1.1989 37 1 2.0811 3.0199 -1.3025 38 1 3.9787 2.1805 -0.0034 39 1 3.8565 0.6416 -0.8895 40 1 5.9256 -0.0497 0.4398 41 1 5.8724 1.4643 1.3743 42 1 5.8380 -0.1036 2.2166 43 1 3.3217 -1.3628 0.3252 44 1 2.8415 -3.3635 4.2473 45 1 1.9627 -5.4358 1.1442 46 1 0.3823 -10.2227 2.2467 47 1 2.1107 -5.6667 5.4254 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746419401.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:49 Heat of formation + Delta-G solvation = -55.829966 kcal Electronic energy + Delta-G solvation = -29933.358067 eV Core-core repulsion = 25731.745974 eV Total energy + Delta-G solvation = -4201.612093 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.99843 -41.23995 -40.19704 -39.24219 -37.01523 -36.00691 -34.99929 -34.01707 -32.29193 -31.75575 -29.84830 -28.53454 -28.33359 -27.23007 -26.84730 -25.58308 -22.98319 -22.42551 -21.53938 -21.18635 -20.79404 -19.57771 -19.10873 -17.73469 -17.45926 -17.24168 -16.94597 -16.67655 -16.55537 -16.46048 -15.99094 -15.65349 -15.45532 -15.02844 -14.86856 -14.75981 -14.51460 -14.35383 -13.90303 -13.51728 -13.42132 -13.37185 -13.32781 -13.02078 -12.93615 -12.90626 -12.84606 -12.73968 -12.44617 -12.34718 -12.20806 -12.02585 -11.96033 -11.67977 -11.26444 -11.07078 -10.86610 -10.48245 -10.44919 -10.13400 -10.06323 -8.60507 -8.48535 -6.25905 0.39276 1.29306 1.38481 1.46706 1.60303 1.73695 2.10524 2.12688 2.58050 2.63355 2.87162 3.05491 3.07978 3.57623 3.66928 3.82595 4.04888 4.25483 4.29401 4.40343 4.42305 4.44523 4.53185 4.53627 4.69485 4.72441 4.76036 4.79884 4.90089 4.92185 4.94161 4.97369 4.99362 5.04095 5.15514 5.23752 5.27946 5.32940 5.34016 5.39815 5.48772 5.92036 6.11864 6.29215 6.39591 6.57216 6.69056 6.93864 7.14830 7.42180 7.63604 8.50943 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022582 B = 0.002336 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.608332 B =11985.830762 C =12580.026709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.393 6.393 3 C 0.100 3.900 4 C -0.180 4.180 5 C -0.172 4.172 6 C -0.108 4.108 7 C 0.136 3.864 8 H 0.085 0.915 9 C -0.162 4.162 10 N -0.663 5.663 11 C 0.524 3.476 12 O -0.551 6.551 13 C 0.485 3.515 14 O -0.542 6.542 15 N -0.587 5.587 16 C -0.054 4.054 17 C -0.050 4.050 18 N -0.307 5.307 19 N -0.163 5.163 20 C -0.352 4.352 21 H 0.141 0.859 22 C -0.006 4.006 23 N -0.821 5.821 24 Si 1.020 2.980 25 H -0.242 1.242 26 H -0.272 1.272 27 H -0.272 1.272 28 C -0.077 4.077 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.127 0.873 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.040 0.960 43 H 0.416 0.584 44 H 0.422 0.578 45 H 0.174 0.826 46 H 0.278 0.722 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.227 24.143 -3.869 24.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.313 6.313 3 C 0.061 3.939 4 C -0.237 4.237 5 C -0.229 4.229 6 C -0.146 4.146 7 C 0.033 3.967 8 H 0.103 0.897 9 C -0.220 4.220 10 N -0.314 5.314 11 C 0.304 3.696 12 O -0.430 6.430 13 C 0.267 3.733 14 O -0.420 6.420 15 N -0.232 5.232 16 C -0.160 4.160 17 C -0.225 4.225 18 N -0.139 5.139 19 N 0.068 4.932 20 C -0.483 4.483 21 H 0.159 0.841 22 C -0.218 4.218 23 N -0.449 5.449 24 Si 0.839 3.161 25 H -0.164 1.164 26 H -0.197 1.197 27 H -0.197 1.197 28 C -0.228 4.228 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.145 0.855 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.059 0.941 43 H 0.253 0.747 44 H 0.259 0.741 45 H 0.191 0.809 46 H 0.087 0.913 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 3.889 22.768 -4.499 23.531 hybrid contribution -0.345 0.064 0.489 0.601 sum 3.545 22.832 -4.010 23.451 Atomic orbital electron populations 1.22747 0.81386 1.02216 1.00565 1.87983 1.19816 1.28359 1.95107 1.21733 0.93864 0.83185 0.95140 1.22476 1.01974 1.01581 0.97642 1.22359 1.02099 1.01398 0.97044 1.22032 0.92470 1.02930 0.97145 1.21328 0.94897 0.80120 1.00338 0.89707 1.22188 0.93928 1.03873 1.02014 1.45761 1.63244 1.14034 1.08406 1.19565 0.78827 0.85857 0.85368 1.90700 1.52200 1.71055 1.29041 1.20444 0.80782 0.87888 0.84211 1.90635 1.51161 1.71000 1.29179 1.42117 1.61375 1.09965 1.09699 1.17310 1.18301 0.86836 0.93547 1.24224 1.06592 0.92432 0.99253 1.78149 1.26769 1.18164 0.90776 1.44844 1.36015 1.08351 1.03952 1.20689 1.46401 0.88890 0.92354 0.84129 1.26898 0.94907 1.02943 0.97053 1.70389 1.35311 1.29001 1.10179 0.84519 0.77973 0.74871 0.78734 1.16426 1.19675 1.19713 1.21988 1.14102 0.87770 0.98925 0.91235 0.93860 0.92414 0.89310 0.92376 0.93322 0.92005 0.92276 0.89504 0.85515 0.89726 0.91603 0.88734 0.94059 0.74670 0.74119 0.80912 0.91261 0.79587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.21 113.37 1.16 1.70 16 2 O -0.39 -8.45 8.00 -148.98 -1.19 -9.64 16 3 C 0.10 1.44 0.82 -10.79 -0.01 1.43 16 4 C -0.18 -2.52 7.91 71.98 0.57 -1.95 16 5 C -0.17 -1.83 8.07 71.98 0.58 -1.25 16 6 C -0.11 -1.27 4.11 30.60 0.13 -1.14 16 7 C 0.14 2.40 2.36 44.99 0.11 2.51 16 8 H 0.08 1.70 5.56 -2.39 -0.01 1.69 16 9 C -0.16 -2.47 9.48 71.98 0.68 -1.79 16 10 N -0.66 -16.36 3.70 -444.00 -1.64 -18.01 16 11 C 0.52 16.49 7.85 87.22 0.68 17.18 16 12 O -0.55 -18.37 16.14 -3.28 -0.05 -18.43 16 13 C 0.48 18.48 7.85 87.23 0.69 19.16 16 14 O -0.54 -23.35 13.62 -3.42 -0.05 -23.40 16 15 N -0.59 -22.92 5.45 -305.34 -1.66 -24.58 16 16 C -0.05 -2.56 6.90 37.82 0.26 -2.30 16 17 C -0.05 -2.73 10.85 85.44 0.93 -1.80 16 18 N -0.31 -18.56 10.39 -56.43 -0.59 -19.15 16 19 N -0.16 -9.17 3.73 -189.97 -0.71 -9.88 16 20 C -0.35 -18.74 10.25 84.02 0.86 -17.88 16 21 H 0.14 6.51 7.83 -2.91 -0.02 6.49 16 22 C -0.01 -0.31 5.50 84.96 0.47 0.15 16 23 N -0.82 -47.27 11.81 21.67 0.26 -47.01 16 24 Si 1.02 38.62 29.55 68.60 2.03 40.65 16 25 H -0.24 -8.22 7.11 99.48 0.71 -7.51 16 26 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 27 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 28 C -0.08 -3.69 11.50 83.41 0.96 -2.73 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.04 0.81 6.42 -2.39 -0.02 0.80 16 31 H 0.06 0.91 6.55 -2.39 -0.02 0.90 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.83 6.54 -2.38 -0.02 0.81 16 34 H 0.05 0.90 6.30 -2.39 -0.02 0.89 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.64 6.86 -2.39 -0.02 0.63 16 37 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.13 0.69 8.14 -2.39 -0.02 0.68 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.42 10.54 7.26 -92.71 -0.67 9.86 16 44 H 0.42 14.05 8.29 -92.70 -0.77 13.28 16 45 H 0.17 9.37 5.92 -2.91 -0.02 9.35 16 46 H 0.28 14.61 8.31 -92.70 -0.77 13.84 16 47 H 0.19 7.16 8.06 -2.91 -0.02 7.14 16 Total: -1.00 -74.92 384.54 4.03 -70.89 By element: Atomic # 1 Polarization: 47.67 SS G_CDS: -0.42 Total: 47.25 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 8.06 Total: 11.29 kcal Atomic # 7 Polarization: -114.28 SS G_CDS: -4.34 Total: -118.63 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -1.29 Total: -51.46 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -74.92 4.03 -70.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746419401.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.065 kcal (2) G-P(sol) polarization free energy of solvation -74.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds