Wall clock time and date at job start Tue Mar 31 2020 22:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.78602 * 2 1 4 4 C 1.53240 * 109.62998 * 239.51941 * 2 1 3 5 5 N 1.46889 * 109.34238 * 186.45980 * 4 2 1 6 6 C 1.46904 * 110.99954 * 187.25122 * 5 4 2 7 7 C 1.50704 * 109.46835 * 169.99903 * 6 5 4 8 8 C 1.39967 * 126.04501 * 270.11616 * 7 6 5 9 9 Cl 1.73595 * 125.91443 * 0.05283 * 8 7 6 10 10 N 1.30900 * 108.17302 * 180.28993 * 8 7 6 11 11 N 1.40080 * 108.20300 * 359.76419 * 10 8 7 12 12 H 0.96999 * 126.02322 * 180.02562 * 11 10 8 13 13 C 1.34947 * 107.94997 * 0.02562 * 11 10 8 14 14 C 1.50693 * 126.11941 * 179.97438 * 13 11 10 15 15 C 1.52998 * 117.50027 * 60.02719 * 14 13 11 16 16 C 1.53001 * 60.03493 * 252.52177 * 15 14 13 17 17 C 1.46902 * 111.27231 * 63.10064 * 5 4 2 18 18 C 1.53235 * 109.34004 * 296.89826 * 17 5 4 19 19 H 1.09001 * 109.63072 * 173.53333 * 18 17 5 20 20 C 1.53002 * 109.78864 * 294.02456 * 18 17 5 21 21 N 1.47070 * 109.63147 * 120.48761 * 2 1 3 22 22 C 1.36943 * 120.88228 * 350.87163 * 21 2 1 23 23 H 1.07998 * 119.99746 * 26.21519 * 22 21 2 24 24 C 1.38810 * 119.99941 * 206.21637 * 22 21 2 25 25 N 1.31614 * 120.00507 * 17.45527 * 24 22 21 26 26 Si 1.86807 * 119.99728 * 197.45160 * 24 22 21 27 27 H 1.48500 * 109.46981 * 90.00244 * 26 24 22 28 28 H 1.48494 * 109.47222 * 210.00069 * 26 24 22 29 29 H 1.48500 * 109.47012 * 330.00526 * 26 24 22 30 30 H 1.09000 * 109.47020 * 180.48229 * 1 2 3 31 31 H 1.08997 * 109.47101 * 300.48276 * 1 2 3 32 32 H 1.09001 * 109.47291 * 60.48041 * 1 2 3 33 33 H 1.09005 * 109.49568 * 66.49404 * 4 2 1 34 34 H 1.09000 * 109.48878 * 306.42222 * 4 2 1 35 35 H 1.08999 * 109.47206 * 50.00127 * 6 5 4 36 36 H 1.09000 * 109.47189 * 289.99688 * 6 5 4 37 37 H 1.09004 * 115.56521 * 205.71774 * 14 13 11 38 38 H 1.08998 * 117.50651 * 145.02030 * 15 14 13 39 39 H 1.09006 * 117.49912 * 0.02562 * 15 14 13 40 40 H 1.08996 * 117.50279 * 107.47613 * 16 15 14 41 41 H 1.09004 * 117.49556 * 252.47581 * 16 15 14 42 42 H 1.08998 * 109.48839 * 56.85372 * 17 5 4 43 43 H 1.08994 * 109.49462 * 176.93335 * 17 5 4 44 44 H 1.08997 * 109.47230 * 179.12671 * 20 18 17 45 45 H 1.09000 * 109.47112 * 299.12441 * 20 18 17 46 46 H 1.08993 * 109.47157 * 59.12555 * 20 18 17 47 47 H 0.96998 * 120.00076 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0448 -0.7321 -1.2439 5 7 3.5053 -0.8643 -1.1610 6 6 4.0567 -1.4060 -2.4102 7 6 5.5597 -1.2989 -2.3840 8 6 6.3161 -0.2135 -2.8410 9 17 5.6852 1.2464 -3.5367 10 7 7.5819 -0.4921 -2.6578 11 7 7.6704 -1.7619 -2.0730 12 1 8.4887 -2.2208 -1.8266 13 6 6.4164 -2.2343 -1.9129 14 6 6.0383 -3.5673 -1.3207 15 6 6.4692 -3.8480 0.1203 16 6 7.1677 -4.5615 -1.0390 17 6 3.9016 -1.6870 -0.0103 18 6 3.4629 -0.9940 1.2841 19 1 3.6508 -1.6512 2.1332 20 6 4.2412 0.3112 1.4623 21 7 2.0241 -0.7028 1.1937 22 6 1.1673 -1.0758 2.1947 23 1 0.1252 -1.2550 1.9747 24 6 1.6381 -1.2235 3.4922 25 7 2.7900 -0.6895 3.8391 26 14 0.6368 -2.1800 4.7460 27 1 1.0298 -3.6114 4.7052 28 1 0.8924 -1.6350 6.1034 29 1 -0.8078 -2.0540 4.4258 30 1 -0.3633 -1.0276 0.0087 31 1 -0.3633 0.5213 0.8856 32 1 -0.3634 0.5064 -0.8943 33 1 1.7809 -0.1637 -2.1358 34 1 1.5923 -1.7224 -1.2963 35 1 3.6667 -0.8389 -3.2555 36 1 3.7687 -2.4524 -2.5108 37 1 5.0806 -3.9727 -1.6475 38 1 5.7952 -4.4379 0.7415 39 1 7.0259 -3.0682 0.6401 40 1 8.1838 -4.2509 -1.2822 41 1 6.9534 -5.6209 -1.1803 42 1 3.4233 -2.6640 -0.0798 43 1 4.9844 -1.8111 -0.0075 44 1 3.9143 0.8073 2.3761 45 1 5.3070 0.0925 1.5290 46 1 4.0569 0.9635 0.6088 47 1 3.1188 -0.7924 4.7458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895969836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:22 Heat of formation + Delta-G solvation = 114.322091 kcal Electronic energy + Delta-G solvation = -29090.594006 eV Core-core repulsion = 25337.069425 eV Total energy + Delta-G solvation = -3753.524581 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.62431 -39.94590 -38.16231 -37.56345 -36.47836 -34.24336 -33.32616 -32.20451 -31.60156 -29.54886 -27.47209 -27.40010 -25.73749 -24.50584 -23.52970 -23.28300 -22.43246 -22.20834 -20.35386 -20.19569 -18.42934 -17.94574 -17.12850 -16.84804 -16.36700 -16.07418 -15.96307 -15.65114 -15.60203 -15.42387 -14.90779 -14.77537 -14.46716 -13.98549 -13.54444 -13.43860 -13.28261 -13.04810 -12.82288 -12.76354 -12.73283 -12.58007 -12.50386 -12.46593 -12.23581 -12.19166 -12.11080 -11.78589 -11.72564 -11.65401 -11.53172 -11.35133 -11.11332 -10.92189 -10.39101 -10.24765 -9.53204 -9.00188 -8.45769 -7.71168 -5.12568 0.56231 0.62935 1.38001 1.49774 1.51908 1.58950 2.06692 2.59249 2.86229 3.27187 3.41399 3.45198 3.71257 3.74194 3.89303 3.96474 4.01301 4.15721 4.36550 4.46228 4.53691 4.61211 4.68248 4.70230 4.72013 4.80670 4.89244 4.96183 4.97734 4.98323 5.00781 5.04966 5.09813 5.15549 5.16535 5.18656 5.33189 5.38513 5.49822 5.62947 5.77666 5.83872 6.04658 6.14756 6.37263 6.41451 6.45912 6.56161 7.31773 8.03722 8.56892 9.33540 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.012659 B = 0.004394 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.392269 B = 6371.228661 C = 7578.969352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.164 3.836 3 H 0.012 0.988 4 C 0.060 3.940 5 N -0.532 5.532 6 C 0.136 3.864 7 C -0.219 4.219 8 C 0.135 3.865 9 Cl 0.010 6.990 10 N -0.305 5.305 11 N -0.449 5.449 12 H 0.454 0.546 13 C 0.150 3.850 14 C -0.113 4.113 15 C -0.169 4.169 16 C -0.146 4.146 17 C 0.066 3.934 18 C 0.200 3.800 19 H 0.056 0.944 20 C -0.112 4.112 21 N -0.598 5.598 22 C -0.245 4.245 23 H 0.072 0.928 24 C -0.050 4.050 25 N -0.924 5.924 26 Si 0.953 3.047 27 H -0.290 1.290 28 H -0.302 1.302 29 H -0.273 1.273 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.026 0.974 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.133 0.867 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.125 0.875 42 H 0.014 0.986 43 H 0.076 0.924 44 H 0.034 0.966 45 H 0.021 0.979 46 H 0.032 0.968 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.867 -6.891 -15.166 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.057 3.943 3 H 0.030 0.970 4 C -0.069 4.069 5 N -0.256 5.256 6 C 0.007 3.993 7 C -0.231 4.231 8 C -0.056 4.056 9 Cl 0.038 6.962 10 N -0.132 5.132 11 N -0.162 5.162 12 H 0.302 0.698 13 C 0.020 3.980 14 C -0.132 4.132 15 C -0.206 4.206 16 C -0.183 4.183 17 C -0.063 4.063 18 C 0.093 3.907 19 H 0.074 0.926 20 C -0.171 4.171 21 N -0.322 5.322 22 C -0.376 4.376 23 H 0.090 0.910 24 C -0.245 4.245 25 N -0.571 5.571 26 Si 0.783 3.217 27 H -0.217 1.217 28 H -0.230 1.230 29 H -0.198 1.198 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.045 0.955 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.151 0.849 38 H 0.124 0.876 39 H 0.107 0.893 40 H 0.125 0.875 41 H 0.143 0.857 42 H 0.033 0.967 43 H 0.094 0.906 44 H 0.053 0.947 45 H 0.040 0.960 46 H 0.051 0.949 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 9.217 -5.842 -15.177 18.693 hybrid contribution -1.075 -1.066 1.333 2.017 sum 8.142 -6.908 -13.844 17.483 Atomic orbital electron populations 1.21696 0.94658 1.01218 1.00975 1.20650 0.93481 0.93343 0.86779 0.96999 1.22490 0.86970 0.98858 0.98580 1.61855 1.10438 1.50890 1.02416 1.20290 0.87970 0.98486 0.92511 1.19486 0.96970 0.94117 1.12524 1.22600 0.91587 0.90928 1.00526 1.98377 1.84475 1.31663 1.81699 1.77261 1.17652 0.97744 1.20546 1.45898 1.07756 1.12973 1.49571 0.69826 1.20114 0.84629 0.95770 0.97486 1.20721 1.01894 0.90637 0.99994 1.23098 1.03890 1.03402 0.90256 1.23208 0.96181 0.98785 1.00134 1.22532 0.99509 0.93077 0.91199 1.20245 0.82599 0.94240 0.93611 0.92596 1.21686 0.96536 0.99663 0.99212 1.44534 1.03692 1.65576 1.18394 1.19490 0.93213 1.37661 0.87200 0.91017 1.25585 0.98796 1.01852 0.98272 1.70198 1.22543 1.46784 1.17581 0.85478 0.78924 0.78629 0.78673 1.21683 1.22973 1.19833 0.93186 0.94169 0.90739 0.89503 0.95550 0.89437 0.93522 0.84896 0.87585 0.89326 0.87466 0.85672 0.96742 0.90590 0.94681 0.96002 0.94907 0.94807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 7.93 71.98 0.57 -4.00 16 2 C 0.16 6.64 3.26 44.96 0.15 6.79 16 3 H 0.01 0.55 7.63 -2.39 -0.02 0.53 16 4 C 0.06 2.00 4.91 86.39 0.42 2.43 16 5 N -0.53 -17.70 4.12 -899.83 -3.71 -21.41 16 6 C 0.14 3.65 5.10 85.56 0.44 4.08 16 7 C -0.22 -5.94 5.00 -20.12 -0.10 -6.04 16 8 C 0.13 3.89 7.84 85.25 0.67 4.56 16 9 Cl 0.01 0.27 29.04 -2.72 -0.08 0.19 16 10 N -0.31 -8.59 12.70 -49.69 -0.63 -9.22 16 11 N -0.45 -9.82 7.23 -48.01 -0.35 -10.17 16 12 H 0.45 6.76 7.96 -213.33 -1.70 5.06 16 13 C 0.15 3.47 5.75 41.40 0.24 3.71 16 14 C -0.11 -2.10 4.54 -11.52 -0.05 -2.15 16 15 C -0.17 -3.18 9.16 30.59 0.28 -2.90 16 16 C -0.15 -1.82 10.15 30.62 0.31 -1.51 16 17 C 0.07 2.43 4.22 86.38 0.36 2.80 16 18 C 0.20 9.32 2.34 44.96 0.11 9.42 16 19 H 0.06 3.02 6.10 -2.39 -0.01 3.00 16 20 C -0.11 -5.34 8.97 71.98 0.65 -4.69 16 21 N -0.60 -28.90 2.73 -650.67 -1.78 -30.68 16 22 C -0.25 -12.95 8.73 84.03 0.73 -12.22 16 23 H 0.07 3.70 6.15 -2.91 -0.02 3.68 16 24 C -0.05 -2.72 4.93 84.86 0.42 -2.30 16 25 N -0.92 -53.19 9.77 21.65 0.21 -52.98 16 26 Si 0.95 44.47 29.59 68.60 2.03 46.50 16 27 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 28 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 29 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 30 H 0.05 1.79 7.55 -2.39 -0.02 1.77 16 31 H 0.04 1.59 7.57 -2.39 -0.02 1.57 16 32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.09 2.44 7.99 -2.38 -0.02 2.42 16 34 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.09 2.18 7.84 -2.39 -0.02 2.16 16 36 H 0.05 1.15 7.31 -2.39 -0.02 1.13 16 37 H 0.13 2.46 7.41 -2.38 -0.02 2.45 16 38 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 40 H 0.11 0.98 7.16 -2.39 -0.02 0.96 16 41 H 0.13 1.15 8.14 -2.39 -0.02 1.14 16 42 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.08 2.63 4.20 -2.39 -0.01 2.62 16 44 H 0.03 1.90 6.89 -2.39 -0.02 1.88 16 45 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.03 1.53 7.10 -2.39 -0.02 1.51 16 47 H 0.24 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -64.66 373.53 0.18 -64.47 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -0.70 Total: 15.31 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 5.19 Total: -2.03 kcal Atomic # 7 Polarization: -118.20 SS G_CDS: -6.25 Total: -124.45 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -0.08 Total: 0.19 kcal Total: -64.66 0.18 -64.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895969836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.796 kcal (2) G-P(sol) polarization free energy of solvation -64.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds