Wall clock time and date at job start Tue Mar 31 2020 22:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.78365 * 2 1 4 4 C 1.53242 * 109.62690 * 239.51459 * 2 1 3 5 5 N 1.46896 * 109.33531 * 186.46048 * 4 2 1 6 6 C 1.46902 * 110.99664 * 187.24727 * 5 4 2 7 7 C 1.50699 * 109.46799 * 65.70159 * 6 5 4 8 8 C 1.39977 * 126.04739 * 269.68844 * 7 6 5 9 9 Cl 1.73595 * 125.90786 * 0.02562 * 8 7 6 10 10 N 1.30901 * 108.17455 * 179.85480 * 8 7 6 11 11 N 1.40079 * 108.20280 * 0.40474 * 10 8 7 12 12 H 0.96998 * 126.02969 * 179.70444 * 11 10 8 13 13 C 1.34948 * 107.95138 * 359.73865 * 11 10 8 14 14 C 1.50701 * 126.12044 * 180.02562 * 13 11 10 15 15 C 1.52999 * 117.49652 * 8.72555 * 14 13 11 16 16 C 1.52994 * 117.49764 * 300.06365 * 14 13 11 17 17 C 1.46901 * 111.27025 * 63.10681 * 5 4 2 18 18 C 1.53243 * 109.33744 * 296.89259 * 17 5 4 19 19 H 1.09002 * 109.62246 * 294.11959 * 18 17 5 20 20 C 1.52999 * 109.62895 * 173.54257 * 18 17 5 21 21 N 1.47076 * 108.52136 * 53.83115 * 18 17 5 22 22 C 1.36929 * 120.88216 * 128.79698 * 21 18 17 23 23 H 1.07998 * 120.00070 * 232.57160 * 22 21 18 24 24 C 1.38815 * 120.00183 * 52.57258 * 22 21 18 25 25 N 1.31620 * 119.99959 * 18.92481 * 24 22 21 26 26 Si 1.86803 * 119.99917 * 198.93175 * 24 22 21 27 27 H 1.48493 * 109.47247 * 59.99854 * 26 24 22 28 28 H 1.48502 * 109.47169 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.47185 * 299.99399 * 26 24 22 30 30 H 1.08994 * 109.47601 * 180.48616 * 1 2 3 31 31 H 1.08999 * 109.47017 * 300.49179 * 1 2 3 32 32 H 1.09008 * 109.47291 * 60.48328 * 1 2 3 33 33 H 1.08991 * 109.49233 * 66.49701 * 4 2 1 34 34 H 1.09006 * 109.48933 * 306.42120 * 4 2 1 35 35 H 1.08997 * 109.47341 * 185.69685 * 6 5 4 36 36 H 1.08997 * 109.47373 * 305.70401 * 6 5 4 37 37 H 1.09004 * 115.54652 * 154.39379 * 14 13 11 38 38 H 1.08995 * 117.49809 * 0.02562 * 15 14 13 39 39 H 1.09002 * 117.49947 * 145.01929 * 15 14 13 40 40 H 1.09004 * 117.50083 * 214.97649 * 16 14 13 41 41 H 1.09001 * 117.50200 * 359.97438 * 16 14 13 42 42 H 1.09004 * 109.49541 * 56.84798 * 17 5 4 43 43 H 1.08995 * 109.49801 * 176.93119 * 17 5 4 44 44 H 1.09000 * 109.47554 * 52.09387 * 20 18 17 45 45 H 1.08999 * 109.47390 * 172.09927 * 20 18 17 46 46 H 1.09002 * 109.46856 * 292.09562 * 20 18 17 47 47 H 0.96999 * 119.99637 * 182.48841 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0448 -0.7323 -1.2439 5 7 3.5054 -0.8644 -1.1608 6 6 4.0567 -1.4063 -2.4100 7 6 3.8418 -0.4158 -3.5252 8 6 2.7285 -0.3573 -4.3717 9 17 1.3526 -1.4145 -4.3188 10 7 2.9028 0.6349 -5.2075 11 7 4.1374 1.2333 -4.9250 12 1 4.5247 1.9902 -5.3919 13 6 4.6935 0.5706 -3.8893 14 6 6.0246 0.8751 -3.2517 15 6 6.7365 2.1593 -3.6816 16 6 7.2675 0.7990 -4.1407 17 6 3.9015 -1.6871 -0.0101 18 6 3.4628 -0.9940 1.2843 19 1 4.0177 -0.0639 1.4076 20 6 3.7266 -1.9163 2.4761 21 7 2.0240 -0.7028 1.1938 22 6 1.1671 -1.0764 2.1944 23 1 0.2833 -1.6518 1.9616 24 6 1.4343 -0.7156 3.5079 25 7 2.2687 0.2698 3.7629 26 14 0.6097 -1.6288 4.9135 27 1 0.9787 -3.0659 4.8541 28 1 1.0597 -1.0558 6.2076 29 1 -0.8642 -1.4908 4.7964 30 1 -0.3634 -1.0275 0.0087 31 1 -0.3633 0.5215 0.8855 32 1 -0.3634 0.5063 -0.8943 33 1 1.7810 -0.1639 -2.1357 34 1 1.5923 -1.7226 -1.2962 35 1 5.1243 -1.5888 -2.2870 36 1 3.5538 -2.3422 -2.6533 37 1 6.1297 0.5651 -2.2120 38 1 6.2419 2.7842 -4.4251 39 1 7.3103 2.6942 -2.9247 40 1 8.1905 0.4395 -3.6857 41 1 7.1225 0.5284 -5.1865 42 1 3.4232 -2.6641 -0.0796 43 1 4.9844 -1.8113 -0.0072 44 1 4.7617 -2.2570 2.4499 45 1 3.5465 -1.3724 3.4034 46 1 3.0595 -2.7768 2.4242 47 1 2.4832 0.4983 4.6809 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895969838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:27 Heat of formation + Delta-G solvation = 129.193592 kcal Electronic energy + Delta-G solvation = -28592.152063 eV Core-core repulsion = 24839.272359 eV Total energy + Delta-G solvation = -3752.879704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.61829 -38.29035 -37.37272 -36.63555 -35.01095 -32.65304 -31.91132 -31.02081 -30.34227 -27.57564 -26.21854 -25.70538 -24.28649 -23.55249 -22.75976 -21.50624 -21.41241 -20.20509 -19.30178 -18.96867 -17.52912 -16.21852 -15.97680 -15.49512 -15.15039 -14.98774 -14.53546 -14.33144 -14.24311 -14.11941 -13.44044 -13.34061 -12.90665 -12.76578 -12.32349 -12.14872 -11.93870 -11.80753 -11.64956 -11.51609 -11.37548 -11.23380 -11.07538 -10.92503 -10.81235 -10.72522 -10.55005 -10.47414 -10.42332 -10.23370 -10.06487 -9.69597 -9.64111 -9.38156 -9.29348 -8.51203 -8.05061 -7.64902 -6.25752 -5.63037 -3.43017 1.53789 1.55984 2.39152 2.93801 3.37944 3.43843 3.46714 3.59496 4.18369 4.46760 4.49914 4.59383 4.68521 4.79054 4.94829 5.25568 5.27528 5.34261 5.44008 5.48785 5.53231 5.71893 5.72253 5.87549 5.96759 6.04477 6.11697 6.21399 6.24583 6.35778 6.39663 6.46146 6.55367 6.62045 6.72855 6.82523 6.92289 7.00462 7.04731 7.25840 7.32429 7.34500 7.65161 7.66834 7.80715 7.86847 7.96957 8.70429 9.31817 9.85209 10.64610 11.26987 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.014779 B = 0.003771 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.148841 B = 7423.064321 C = 8511.104563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.174 3.826 3 H 0.028 0.972 4 C 0.052 3.948 5 N -0.527 5.527 6 C 0.127 3.873 7 C -0.196 4.196 8 C 0.135 3.865 9 Cl 0.009 6.991 10 N -0.281 5.281 11 N -0.464 5.464 12 H 0.440 0.560 13 C 0.148 3.852 14 C -0.091 4.091 15 C -0.174 4.174 16 C -0.166 4.166 17 C 0.043 3.957 18 C 0.201 3.799 19 H 0.034 0.966 20 C -0.142 4.142 21 N -0.578 5.578 22 C -0.258 4.258 23 H 0.050 0.950 24 C 0.035 3.965 25 N -0.875 5.875 26 Si 0.881 3.119 27 H -0.280 1.280 28 H -0.290 1.290 29 H -0.280 1.280 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.060 0.940 34 H 0.026 0.974 35 H 0.077 0.923 36 H 0.038 0.962 37 H 0.142 0.858 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.026 0.974 43 H 0.057 0.943 44 H 0.020 0.980 45 H 0.087 0.913 46 H 0.047 0.953 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.968 0.160 -16.388 18.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.067 3.933 3 H 0.045 0.955 4 C -0.077 4.077 5 N -0.251 5.251 6 C -0.001 4.001 7 C -0.208 4.208 8 C -0.057 4.057 9 Cl 0.037 6.963 10 N -0.107 5.107 11 N -0.175 5.175 12 H 0.285 0.715 13 C 0.019 3.981 14 C -0.111 4.111 15 C -0.211 4.211 16 C -0.204 4.204 17 C -0.086 4.086 18 C 0.095 3.905 19 H 0.052 0.948 20 C -0.200 4.200 21 N -0.303 5.303 22 C -0.388 4.388 23 H 0.067 0.933 24 C -0.167 4.167 25 N -0.516 5.516 26 Si 0.709 3.291 27 H -0.206 1.206 28 H -0.216 1.216 29 H -0.206 1.206 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.096 0.904 36 H 0.056 0.944 37 H 0.159 0.841 38 H 0.108 0.892 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.113 0.887 42 H 0.044 0.956 43 H 0.076 0.924 44 H 0.039 0.961 45 H 0.105 0.895 46 H 0.066 0.934 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.531 1.260 -17.101 19.153 hybrid contribution -0.399 -1.305 1.027 1.708 sum 8.132 -0.045 -16.074 18.014 Atomic orbital electron populations 1.21684 0.96071 1.00993 0.99971 1.20523 0.92318 0.93941 0.86491 0.95453 1.22719 0.86453 0.99001 0.99530 1.61968 1.11709 1.50231 1.01202 1.20330 0.99942 0.92574 0.87303 1.19434 0.94524 1.03725 1.03082 1.22556 0.91597 0.94744 0.96845 1.98400 1.39388 1.60938 1.97592 1.77318 0.99093 1.10831 1.23443 1.45910 1.14886 1.28688 1.27985 0.71481 1.19807 0.95234 0.93057 0.89982 1.20702 0.86781 1.03105 1.00480 1.23014 1.03634 0.90613 1.03876 1.23097 0.97209 1.00156 0.99934 1.22865 0.98319 0.94808 0.92626 1.20249 0.85800 0.94823 0.89619 0.94819 1.21982 0.96692 0.99863 1.01488 1.44013 1.02601 1.65411 1.18267 1.18617 1.06113 1.28187 0.85925 0.93271 1.25498 0.97613 0.94831 0.98723 1.70140 1.36929 1.25652 1.18833 0.86756 0.79838 0.80291 0.82176 1.20599 1.21611 1.20564 0.93319 0.91782 0.94784 0.92183 0.95575 0.90417 0.94372 0.84052 0.89218 0.87343 0.87528 0.88736 0.95586 0.92448 0.96099 0.89482 0.93435 0.93679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 8.18 37.16 0.30 -2.38 16 2 C 0.17 3.88 3.66 -67.49 -0.25 3.63 16 3 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 4 C 0.05 1.00 4.12 -3.70 -0.02 0.99 16 5 N -0.53 -9.38 4.62 -235.76 -1.09 -10.47 16 6 C 0.13 1.87 5.06 -4.98 -0.03 1.84 16 7 C -0.20 -2.78 4.95 -105.01 -0.52 -3.30 16 8 C 0.13 1.99 6.76 -17.30 -0.12 1.88 16 9 Cl 0.01 0.13 27.35 -51.86 -1.42 -1.29 16 10 N -0.28 -4.02 12.70 32.95 0.42 -3.61 16 11 N -0.46 -5.26 7.23 33.48 0.24 -5.02 16 12 H 0.44 3.52 7.96 -182.62 -1.45 2.06 16 13 C 0.15 1.78 6.71 -82.26 -0.55 1.23 16 14 C -0.09 -0.87 5.78 -91.77 -0.53 -1.40 16 15 C -0.17 -1.25 10.15 -26.69 -0.27 -1.52 16 16 C -0.17 -1.16 10.24 -26.69 -0.27 -1.43 16 17 C 0.04 0.81 4.91 -3.70 -0.02 0.79 16 18 C 0.20 4.59 3.14 -67.49 -0.21 4.38 16 19 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 20 C -0.14 -3.20 7.94 37.16 0.30 -2.90 16 21 N -0.58 -14.25 2.82 -157.01 -0.44 -14.69 16 22 C -0.26 -6.85 6.77 -15.06 -0.10 -6.95 16 23 H 0.05 1.34 7.13 -52.49 -0.37 0.96 16 24 C 0.04 0.94 3.37 -17.43 -0.06 0.88 16 25 N -0.88 -24.63 11.69 55.49 0.65 -23.98 16 26 Si 0.88 20.97 29.60 -169.99 -5.03 15.94 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 30 H 0.05 1.00 7.56 -51.93 -0.39 0.61 16 31 H 0.06 1.44 7.69 -51.93 -0.40 1.04 16 32 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.06 1.11 5.09 -51.93 -0.26 0.85 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 1.00 7.64 -51.93 -0.40 0.61 16 36 H 0.04 0.57 7.98 -51.93 -0.41 0.16 16 37 H 0.14 1.50 8.02 -51.93 -0.42 1.09 16 38 H 0.09 0.55 7.16 -51.93 -0.37 0.17 16 39 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.95 7.99 -51.93 -0.41 0.54 16 44 H 0.02 0.39 8.13 -51.93 -0.42 -0.03 16 45 H 0.09 2.19 4.99 -51.93 -0.26 1.94 16 46 H 0.05 1.09 7.64 -51.93 -0.40 0.70 16 47 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 377.49 15.07 5.69 5.69 Total: -1.00 -29.83 377.49 -11.82 -41.65 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -8.49 Total: 0.04 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -2.34 Total: -4.26 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.22 Total: -57.76 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -1.42 Total: -1.29 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.83 -11.82 -41.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895969838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.843 kcal (2) G-P(sol) polarization free energy of solvation -29.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds