Wall clock time and date at job start Tue Mar 31 2020 22:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.78365 * 2 1 4 4 C 1.53242 * 109.62690 * 239.51459 * 2 1 3 5 5 N 1.46896 * 109.33531 * 186.46048 * 4 2 1 6 6 C 1.46902 * 110.99664 * 187.24727 * 5 4 2 7 7 C 1.50699 * 109.46799 * 65.70159 * 6 5 4 8 8 C 1.39977 * 126.04739 * 269.68844 * 7 6 5 9 9 Cl 1.73595 * 125.90786 * 0.02562 * 8 7 6 10 10 N 1.30901 * 108.17455 * 179.85480 * 8 7 6 11 11 N 1.40079 * 108.20280 * 0.40474 * 10 8 7 12 12 H 0.96998 * 126.02969 * 179.70444 * 11 10 8 13 13 C 1.34948 * 107.95138 * 359.73865 * 11 10 8 14 14 C 1.50701 * 126.12044 * 180.02562 * 13 11 10 15 15 C 1.52999 * 117.49652 * 8.72555 * 14 13 11 16 16 C 1.52994 * 117.49764 * 300.06365 * 14 13 11 17 17 C 1.46901 * 111.27025 * 63.10681 * 5 4 2 18 18 C 1.53243 * 109.33744 * 296.89259 * 17 5 4 19 19 H 1.09002 * 109.62246 * 294.11959 * 18 17 5 20 20 C 1.52999 * 109.62895 * 173.54257 * 18 17 5 21 21 N 1.47076 * 108.52136 * 53.83115 * 18 17 5 22 22 C 1.36929 * 120.88216 * 128.79698 * 21 18 17 23 23 H 1.07998 * 120.00070 * 232.57160 * 22 21 18 24 24 C 1.38815 * 120.00183 * 52.57258 * 22 21 18 25 25 N 1.31620 * 119.99959 * 18.92481 * 24 22 21 26 26 Si 1.86803 * 119.99917 * 198.93175 * 24 22 21 27 27 H 1.48493 * 109.47247 * 59.99854 * 26 24 22 28 28 H 1.48502 * 109.47169 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.47185 * 299.99399 * 26 24 22 30 30 H 1.08994 * 109.47601 * 180.48616 * 1 2 3 31 31 H 1.08999 * 109.47017 * 300.49179 * 1 2 3 32 32 H 1.09008 * 109.47291 * 60.48328 * 1 2 3 33 33 H 1.08991 * 109.49233 * 66.49701 * 4 2 1 34 34 H 1.09006 * 109.48933 * 306.42120 * 4 2 1 35 35 H 1.08997 * 109.47341 * 185.69685 * 6 5 4 36 36 H 1.08997 * 109.47373 * 305.70401 * 6 5 4 37 37 H 1.09004 * 115.54652 * 154.39379 * 14 13 11 38 38 H 1.08995 * 117.49809 * 0.02562 * 15 14 13 39 39 H 1.09002 * 117.49947 * 145.01929 * 15 14 13 40 40 H 1.09004 * 117.50083 * 214.97649 * 16 14 13 41 41 H 1.09001 * 117.50200 * 359.97438 * 16 14 13 42 42 H 1.09004 * 109.49541 * 56.84798 * 17 5 4 43 43 H 1.08995 * 109.49801 * 176.93119 * 17 5 4 44 44 H 1.09000 * 109.47554 * 52.09387 * 20 18 17 45 45 H 1.08999 * 109.47390 * 172.09927 * 20 18 17 46 46 H 1.09002 * 109.46856 * 292.09562 * 20 18 17 47 47 H 0.96999 * 119.99637 * 182.48841 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0448 -0.7323 -1.2439 5 7 3.5054 -0.8644 -1.1608 6 6 4.0567 -1.4063 -2.4100 7 6 3.8418 -0.4158 -3.5252 8 6 2.7285 -0.3573 -4.3717 9 17 1.3526 -1.4145 -4.3188 10 7 2.9028 0.6349 -5.2075 11 7 4.1374 1.2333 -4.9250 12 1 4.5247 1.9902 -5.3919 13 6 4.6935 0.5706 -3.8893 14 6 6.0246 0.8751 -3.2517 15 6 6.7365 2.1593 -3.6816 16 6 7.2675 0.7990 -4.1407 17 6 3.9015 -1.6871 -0.0101 18 6 3.4628 -0.9940 1.2843 19 1 4.0177 -0.0639 1.4076 20 6 3.7266 -1.9163 2.4761 21 7 2.0240 -0.7028 1.1938 22 6 1.1671 -1.0764 2.1944 23 1 0.2833 -1.6518 1.9616 24 6 1.4343 -0.7156 3.5079 25 7 2.2687 0.2698 3.7629 26 14 0.6097 -1.6288 4.9135 27 1 0.9787 -3.0659 4.8541 28 1 1.0597 -1.0558 6.2076 29 1 -0.8642 -1.4908 4.7964 30 1 -0.3634 -1.0275 0.0087 31 1 -0.3633 0.5215 0.8855 32 1 -0.3634 0.5063 -0.8943 33 1 1.7810 -0.1639 -2.1357 34 1 1.5923 -1.7226 -1.2962 35 1 5.1243 -1.5888 -2.2870 36 1 3.5538 -2.3422 -2.6533 37 1 6.1297 0.5651 -2.2120 38 1 6.2419 2.7842 -4.4251 39 1 7.3103 2.6942 -2.9247 40 1 8.1905 0.4395 -3.6857 41 1 7.1225 0.5284 -5.1865 42 1 3.4232 -2.6641 -0.0796 43 1 4.9844 -1.8113 -0.0072 44 1 4.7617 -2.2570 2.4499 45 1 3.5465 -1.3724 3.4034 46 1 3.0595 -2.7768 2.4242 47 1 2.4832 0.4983 4.6809 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895969838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:26 Heat of formation + Delta-G solvation = 111.186318 kcal Electronic energy + Delta-G solvation = -28592.932917 eV Core-core repulsion = 24839.272359 eV Total energy + Delta-G solvation = -3753.660558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.60508 -39.91522 -38.13824 -37.62029 -36.63425 -34.43118 -33.54299 -32.18505 -31.63180 -29.38367 -27.71150 -27.26513 -25.99068 -24.56775 -23.32270 -22.99239 -22.37392 -21.92736 -20.80246 -20.30993 -18.44517 -18.03801 -17.07864 -16.75291 -16.56255 -16.17610 -16.05396 -15.98361 -15.66339 -15.26094 -14.96744 -14.65823 -14.60539 -14.01117 -13.63563 -13.37639 -13.28470 -13.25307 -13.11742 -12.76920 -12.62453 -12.55232 -12.50508 -12.41145 -12.29964 -12.24136 -12.06473 -11.94124 -11.79761 -11.64268 -11.45818 -11.39762 -11.30122 -11.13797 -10.29654 -10.07704 -9.54772 -9.07936 -8.29343 -7.63601 -5.51184 0.51308 0.59461 1.32962 1.46983 1.49376 1.54897 2.03857 2.52980 2.95598 3.25037 3.30634 3.41839 3.65127 3.74828 3.85660 4.04851 4.09499 4.28377 4.34666 4.38673 4.44243 4.58349 4.64507 4.69960 4.76060 4.77455 4.84024 4.86172 4.96169 4.99921 5.01708 5.01823 5.06136 5.11238 5.15435 5.20362 5.23659 5.31925 5.48497 5.54295 5.76014 5.83037 5.91692 6.13926 6.30746 6.38603 6.39450 6.62852 7.31994 7.89355 8.63675 9.20774 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.014779 B = 0.003771 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.148841 B = 7423.064321 C = 8511.104563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.166 3.834 3 H -0.001 1.001 4 C 0.073 3.927 5 N -0.534 5.534 6 C 0.135 3.865 7 C -0.225 4.225 8 C 0.123 3.877 9 Cl 0.005 6.995 10 N -0.303 5.303 11 N -0.449 5.449 12 H 0.454 0.546 13 C 0.165 3.835 14 C -0.117 4.117 15 C -0.166 4.166 16 C -0.146 4.146 17 C 0.057 3.943 18 C 0.199 3.801 19 H 0.002 0.998 20 C -0.133 4.133 21 N -0.592 5.592 22 C -0.262 4.262 23 H 0.041 0.959 24 C 0.000 4.000 25 N -0.907 5.907 26 Si 0.935 3.065 27 H -0.274 1.274 28 H -0.292 1.292 29 H -0.278 1.278 30 H 0.047 0.953 31 H 0.039 0.961 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.019 0.981 35 H 0.099 0.901 36 H 0.036 0.964 37 H 0.131 0.869 38 H 0.102 0.898 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.101 0.899 42 H 0.021 0.979 43 H 0.086 0.914 44 H 0.052 0.948 45 H 0.058 0.942 46 H 0.037 0.963 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.535 -0.234 -17.864 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.060 3.940 3 H 0.016 0.984 4 C -0.056 4.056 5 N -0.258 5.258 6 C 0.007 3.993 7 C -0.237 4.237 8 C -0.069 4.069 9 Cl 0.033 6.967 10 N -0.130 5.130 11 N -0.162 5.162 12 H 0.303 0.697 13 C 0.035 3.965 14 C -0.137 4.137 15 C -0.203 4.203 16 C -0.183 4.183 17 C -0.072 4.072 18 C 0.093 3.907 19 H 0.020 0.980 20 C -0.191 4.191 21 N -0.318 5.318 22 C -0.392 4.392 23 H 0.059 0.941 24 C -0.200 4.200 25 N -0.548 5.548 26 Si 0.762 3.238 27 H -0.199 1.199 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.037 0.963 35 H 0.117 0.883 36 H 0.055 0.945 37 H 0.149 0.851 38 H 0.120 0.880 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.119 0.881 42 H 0.040 0.960 43 H 0.105 0.895 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.056 0.944 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 10.098 0.867 -18.615 21.195 hybrid contribution -0.824 -1.085 1.425 1.971 sum 9.274 -0.217 -17.190 19.533 Atomic orbital electron populations 1.21561 0.95124 1.00857 1.00097 1.20638 0.93269 0.92718 0.87360 0.98379 1.22378 0.87495 0.98031 0.97742 1.61919 1.10692 1.50675 1.02490 1.20301 1.00806 0.92482 0.85705 1.19469 0.95367 1.05113 1.03731 1.22687 0.91809 0.95034 0.97346 1.98391 1.39626 1.61068 1.97610 1.77255 1.00471 1.11206 1.24028 1.45916 1.13940 1.28636 1.27696 0.69710 1.20121 0.95565 0.91696 0.89099 1.20704 0.86599 1.05985 1.00372 1.23160 1.02698 0.90415 1.04032 1.23180 0.96021 0.99442 0.99686 1.22604 0.99870 0.93781 0.90978 1.20230 0.84554 0.93909 0.92035 0.98032 1.21837 0.98405 0.98862 1.00045 1.44276 1.03247 1.65689 1.18545 1.18720 1.06195 1.27632 0.86682 0.94109 1.26000 0.98223 0.95300 1.00439 1.70247 1.38570 1.27125 1.18871 0.85899 0.78924 0.79405 0.79546 1.19943 1.21839 1.20366 0.93406 0.94224 0.92080 0.91431 0.96254 0.88307 0.94548 0.85124 0.88004 0.86630 0.86130 0.88095 0.96049 0.89529 0.92940 0.92280 0.94371 0.94063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.97 8.18 71.98 0.59 -4.38 16 2 C 0.17 7.55 3.66 44.96 0.16 7.71 16 3 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 4 C 0.07 2.77 4.12 86.39 0.36 3.13 16 5 N -0.53 -18.45 4.62 -899.82 -4.16 -22.61 16 6 C 0.14 3.73 5.06 85.56 0.43 4.16 16 7 C -0.22 -6.04 4.95 -20.12 -0.10 -6.14 16 8 C 0.12 3.49 6.76 85.25 0.58 4.07 16 9 Cl 0.01 0.15 27.35 -2.72 -0.07 0.07 16 10 N -0.30 -8.29 12.70 -49.68 -0.63 -8.92 16 11 N -0.45 -9.28 7.23 -48.00 -0.35 -9.63 16 12 H 0.45 6.13 7.96 -213.34 -1.70 4.43 16 13 C 0.17 3.64 6.71 41.41 0.28 3.92 16 14 C -0.12 -1.94 5.78 -11.54 -0.07 -2.01 16 15 C -0.17 -1.87 10.15 30.62 0.31 -1.56 16 16 C -0.15 -1.53 10.24 30.62 0.31 -1.22 16 17 C 0.06 2.07 4.91 86.38 0.42 2.49 16 18 C 0.20 9.11 3.14 44.96 0.14 9.25 16 19 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 20 C -0.13 -5.98 7.94 71.98 0.57 -5.41 16 21 N -0.59 -29.73 2.82 -650.65 -1.83 -31.56 16 22 C -0.26 -14.12 6.77 84.04 0.57 -13.55 16 23 H 0.04 2.26 7.13 -2.91 -0.02 2.24 16 24 C 0.00 -0.02 3.37 84.86 0.29 0.26 16 25 N -0.91 -52.27 11.69 21.65 0.25 -52.01 16 26 Si 0.93 43.59 29.60 68.60 2.03 45.62 16 27 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 28 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 29 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 30 H 0.05 1.98 7.56 -2.39 -0.02 1.96 16 31 H 0.04 1.82 7.69 -2.39 -0.02 1.80 16 32 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 33 H 0.07 2.47 5.09 -2.39 -0.01 2.46 16 34 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.10 2.29 7.64 -2.39 -0.02 2.27 16 36 H 0.04 1.03 7.98 -2.39 -0.02 1.01 16 37 H 0.13 2.52 8.02 -2.38 -0.02 2.50 16 38 H 0.10 0.89 7.16 -2.39 -0.02 0.88 16 39 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.02 0.80 8.14 -2.38 -0.02 0.79 16 43 H 0.09 2.65 7.99 -2.39 -0.02 2.63 16 44 H 0.05 1.95 8.13 -2.39 -0.02 1.94 16 45 H 0.06 3.01 4.99 -2.39 -0.01 2.99 16 46 H 0.04 1.74 7.64 -2.39 -0.02 1.72 16 47 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -65.58 377.49 -0.63 -66.21 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -0.72 Total: 12.08 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 4.85 Total: 0.74 kcal Atomic # 7 Polarization: -118.02 SS G_CDS: -6.72 Total: -124.73 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 17 Polarization: 0.15 SS G_CDS: -0.07 Total: 0.07 kcal Total: -65.58 -0.63 -66.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895969838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.401 kcal (2) G-P(sol) polarization free energy of solvation -65.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds