Wall clock time and date at job start Tue Mar 31 2020 22:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.62968 * 2 1 4 4 C 1.53239 * 109.62911 * 120.38890 * 2 1 3 5 5 N 1.47327 * 109.11203 * 66.05674 * 4 2 1 6 6 C 1.46901 * 110.93127 * 187.17611 * 5 4 2 7 7 C 1.50698 * 109.47152 * 65.62046 * 6 5 4 8 8 C 1.39970 * 126.04744 * 90.02837 * 7 6 5 9 9 Cl 1.73604 * 125.91030 * 359.97438 * 8 7 6 10 10 N 1.30896 * 108.17970 * 179.97438 * 8 7 6 11 11 N 1.40087 * 108.19781 * 359.97438 * 10 8 7 12 12 H 0.97007 * 126.02083 * 179.97438 * 11 10 8 13 13 C 1.34941 * 107.94982 * 359.77918 * 11 10 8 14 14 C 1.50707 * 126.11888 * 180.24781 * 13 11 10 15 15 C 1.53004 * 117.49626 * 8.88170 * 14 13 11 16 16 C 1.52997 * 117.49637 * 300.22309 * 14 13 11 17 17 C 1.46897 * 111.36744 * 63.00260 * 5 4 2 18 18 C 1.53238 * 109.34146 * 296.88332 * 17 5 4 19 19 H 1.09010 * 109.78520 * 294.02152 * 18 17 5 20 20 C 1.52993 * 109.62740 * 173.54000 * 18 17 5 21 21 N 1.47075 * 108.52538 * 53.82676 * 18 17 5 22 22 C 1.36932 * 120.88290 * 128.79805 * 21 18 17 23 23 H 1.07998 * 119.99977 * 332.77312 * 22 21 18 24 24 C 1.38813 * 120.00236 * 152.77766 * 22 21 18 25 25 N 1.31616 * 119.99801 * 343.99138 * 24 22 21 26 26 Si 1.86804 * 119.99987 * 163.99126 * 24 22 21 27 27 H 1.48500 * 109.47040 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.46859 * 119.99882 * 26 24 22 29 29 H 1.48501 * 109.47002 * 239.99942 * 26 24 22 30 30 H 1.09003 * 109.47283 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47051 * 59.99980 * 1 2 3 32 32 H 1.08996 * 109.47065 * 299.99895 * 1 2 3 33 33 H 1.09002 * 109.49304 * 185.83885 * 4 2 1 34 34 H 1.09000 * 109.48860 * 305.91687 * 4 2 1 35 35 H 1.08996 * 109.46907 * 185.62123 * 6 5 4 36 36 H 1.09002 * 109.46888 * 305.61946 * 6 5 4 37 37 H 1.08994 * 115.54853 * 154.55348 * 14 13 11 38 38 H 1.08998 * 117.49752 * 359.97438 * 15 14 13 39 39 H 1.08995 * 117.49262 * 145.02327 * 15 14 13 40 40 H 1.09003 * 117.49909 * 214.97586 * 16 14 13 41 41 H 1.09002 * 117.50288 * 359.97438 * 16 14 13 42 42 H 1.08995 * 109.49205 * 176.91509 * 17 5 4 43 43 H 1.09008 * 109.48994 * 56.84149 * 17 5 4 44 44 H 1.09000 * 109.47403 * 300.12481 * 20 18 17 45 45 H 1.09002 * 109.47689 * 60.13351 * 20 18 17 46 46 H 1.09002 * 109.47240 * 180.12695 * 20 18 17 47 47 H 0.97002 * 120.00090 * 184.47002 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0447 -0.7301 1.2450 5 7 1.6747 -2.1535 1.1571 6 6 1.9978 -2.8578 2.4051 7 6 1.1385 -2.3222 3.5212 8 6 -0.1196 -2.8067 3.8972 9 17 -0.9634 -4.1313 3.1573 10 7 -0.5500 -2.0884 4.9033 11 7 0.4219 -1.1239 5.1995 12 1 0.3671 -0.4552 5.9002 13 6 1.4495 -1.2918 4.3412 14 6 2.7158 -0.4755 4.3010 15 6 2.9575 0.5102 5.4459 16 6 2.5792 1.0286 4.0562 17 6 2.3147 -2.8027 0.0052 18 6 1.8111 -2.1530 -1.2880 19 1 0.7484 -2.3598 -1.4153 20 6 2.5898 -2.7114 -2.4807 21 7 2.0241 -0.7007 -1.1951 22 6 2.6658 -0.0191 -2.1944 23 1 3.3866 -0.5271 -2.8180 24 6 2.3900 1.3248 -2.4060 25 7 1.3117 1.8660 -1.8800 26 14 3.5492 2.3651 -3.4373 27 1 4.6795 1.5259 -3.9099 28 1 2.8155 2.9122 -4.6067 29 1 4.0744 3.4843 -2.6146 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 3.1297 -0.6396 1.2972 34 1 1.5992 -0.2880 2.1361 35 1 1.8081 -3.9239 2.2801 36 1 3.0487 -2.7018 2.6487 37 1 3.5854 -0.9775 3.8770 38 1 2.2005 0.5686 6.2280 39 1 3.9862 0.6570 5.7748 40 1 3.3592 1.5162 3.4715 41 1 1.5735 1.4277 3.9238 42 1 2.0649 -3.8636 0.0006 43 1 3.3960 -2.6835 0.0750 44 1 3.6509 -2.4962 -2.3548 45 1 2.4420 -3.7898 -2.5385 46 1 2.2311 -2.2460 -3.3988 47 1 1.0843 2.7874 -2.0805 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895969839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:32 Heat of formation + Delta-G solvation = 131.531550 kcal Electronic energy + Delta-G solvation = -29082.409142 eV Core-core repulsion = 25329.630819 eV Total energy + Delta-G solvation = -3752.778323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.59490 -38.34505 -37.31052 -36.52556 -34.89921 -32.52586 -31.68428 -30.98122 -30.33271 -27.74579 -26.05951 -25.88711 -23.98207 -23.42015 -22.67305 -21.88774 -21.36450 -20.65352 -19.26005 -18.45801 -17.45129 -16.25697 -15.86099 -15.50092 -15.09260 -14.89914 -14.59367 -14.24144 -14.05305 -13.87703 -13.72414 -13.12968 -12.94974 -12.59591 -12.37235 -12.11864 -11.80308 -11.73913 -11.57372 -11.48595 -11.38406 -11.11100 -11.02868 -10.88520 -10.84807 -10.73192 -10.49992 -10.41222 -10.40210 -10.32504 -9.94772 -9.79009 -9.33957 -9.23601 -9.12897 -8.48047 -8.37829 -7.58844 -6.50332 -5.69334 -3.09178 1.58439 1.66077 2.47328 3.01640 3.38819 3.47577 3.48611 3.63288 4.24761 4.52360 4.53823 4.66537 4.72507 4.87998 4.95933 5.16961 5.34613 5.41879 5.45990 5.56316 5.73277 5.77088 5.82242 5.89749 5.93228 5.98500 6.10868 6.22475 6.23797 6.29133 6.34777 6.41767 6.48027 6.53591 6.76316 6.95786 7.05123 7.05462 7.14712 7.22414 7.35509 7.39928 7.66501 7.75462 7.83344 7.97892 8.06180 8.55580 9.33021 9.95621 10.54374 11.38807 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.012680 B = 0.004378 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.636347 B = 6393.615153 C = 7593.264542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.200 3.800 3 H 0.092 0.908 4 C 0.043 3.957 5 N -0.521 5.521 6 C 0.129 3.871 7 C -0.194 4.194 8 C 0.148 3.852 9 Cl 0.009 6.991 10 N -0.283 5.283 11 N -0.463 5.463 12 H 0.440 0.560 13 C 0.137 3.863 14 C -0.097 4.097 15 C -0.178 4.178 16 C -0.155 4.155 17 C 0.051 3.949 18 C 0.172 3.828 19 H 0.033 0.967 20 C -0.137 4.137 21 N -0.585 5.585 22 C -0.244 4.244 23 H 0.069 0.931 24 C 0.001 3.999 25 N -0.901 5.901 26 Si 0.896 3.104 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.033 0.967 31 H 0.070 0.930 32 H 0.014 0.986 33 H 0.018 0.982 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.033 0.967 37 H 0.131 0.869 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.100 0.900 42 H 0.059 0.941 43 H 0.026 0.974 44 H 0.050 0.950 45 H 0.038 0.962 46 H 0.061 0.939 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.147 -6.958 14.553 16.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.094 3.906 3 H 0.110 0.890 4 C -0.086 4.086 5 N -0.246 5.246 6 C 0.000 4.000 7 C -0.206 4.206 8 C -0.044 4.044 9 Cl 0.037 6.963 10 N -0.109 5.109 11 N -0.174 5.174 12 H 0.285 0.715 13 C 0.009 3.991 14 C -0.117 4.117 15 C -0.215 4.215 16 C -0.192 4.192 17 C -0.078 4.078 18 C 0.065 3.935 19 H 0.051 0.949 20 C -0.195 4.195 21 N -0.308 5.308 22 C -0.374 4.374 23 H 0.087 0.913 24 C -0.197 4.197 25 N -0.546 5.546 26 Si 0.727 3.273 27 H -0.205 1.205 28 H -0.220 1.220 29 H -0.219 1.219 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.033 0.967 33 H 0.036 0.964 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.051 0.949 37 H 0.149 0.851 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.119 0.881 42 H 0.078 0.922 43 H 0.044 0.956 44 H 0.070 0.930 45 H 0.057 0.943 46 H 0.080 0.920 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.601 -6.778 15.213 16.665 hybrid contribution 1.758 0.802 -0.640 2.035 sum 2.359 -5.975 14.573 15.926 Atomic orbital electron populations 1.21924 0.98160 0.99074 0.99909 1.20363 0.92419 0.95642 0.82222 0.89046 1.23007 0.96822 0.87752 1.00982 1.62041 1.58846 1.02879 1.00805 1.20311 0.94291 0.97851 0.87534 1.19398 0.96885 1.01341 1.02951 1.22429 0.92892 0.93935 0.95154 1.98386 1.77110 1.41331 1.79493 1.77322 1.12217 1.03190 1.18209 1.45886 1.13312 1.28559 1.29609 0.71506 1.19854 0.90581 0.96563 0.92148 1.20648 0.94652 0.91329 1.05106 1.23065 1.03255 1.03266 0.91918 1.23145 1.04204 0.93760 0.98111 1.22636 0.95859 0.97091 0.92249 1.20451 0.96461 0.85856 0.90760 0.94942 1.21800 1.00416 0.97947 0.99356 1.44286 1.66925 1.01080 1.18486 1.19231 1.15442 0.92158 1.10534 0.91297 1.25012 0.96714 0.98495 0.99448 1.69969 1.23779 1.13725 1.47132 0.86309 0.80699 0.80590 0.79711 1.20508 1.21958 1.21868 0.94774 0.91113 0.96685 0.96363 0.91611 0.90487 0.94877 0.85119 0.89225 0.87601 0.87132 0.88146 0.92234 0.95615 0.93047 0.94304 0.91967 0.93914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.96 37.16 0.33 -2.74 16 2 C 0.20 4.61 2.34 -67.49 -0.16 4.45 16 3 H 0.09 2.40 6.12 -51.93 -0.32 2.08 16 4 C 0.04 0.81 4.25 -3.47 -0.01 0.80 16 5 N -0.52 -9.12 4.11 -235.40 -0.97 -10.08 16 6 C 0.13 1.89 5.10 -4.98 -0.03 1.86 16 7 C -0.19 -2.81 4.99 -105.02 -0.52 -3.34 16 8 C 0.15 2.23 7.84 -17.30 -0.14 2.10 16 9 Cl 0.01 0.13 29.04 -51.86 -1.51 -1.38 16 10 N -0.28 -4.19 12.70 32.95 0.42 -3.77 16 11 N -0.46 -5.53 7.23 33.48 0.24 -5.29 16 12 H 0.44 3.82 7.97 -182.60 -1.45 2.37 16 13 C 0.14 1.73 5.75 -82.26 -0.47 1.26 16 14 C -0.10 -1.02 4.56 -91.77 -0.42 -1.44 16 15 C -0.18 -1.40 10.15 -26.69 -0.27 -1.67 16 16 C -0.15 -1.58 9.16 -26.69 -0.24 -1.83 16 17 C 0.05 0.91 4.92 -3.70 -0.02 0.89 16 18 C 0.17 3.55 3.25 -67.50 -0.22 3.33 16 19 H 0.03 0.73 7.63 -51.92 -0.40 0.34 16 20 C -0.14 -2.55 7.94 37.15 0.29 -2.26 16 21 N -0.58 -14.01 2.73 -157.01 -0.43 -14.44 16 22 C -0.24 -6.38 8.71 -15.06 -0.13 -6.51 16 23 H 0.07 1.78 6.18 -52.49 -0.32 1.46 16 24 C 0.00 0.03 4.96 -17.43 -0.09 -0.05 16 25 N -0.90 -25.07 9.73 55.49 0.54 -24.53 16 26 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H 0.03 0.79 7.08 -51.93 -0.37 0.42 16 31 H 0.07 1.86 6.87 -51.93 -0.36 1.51 16 32 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 1.17 4.24 -51.93 -0.22 0.95 16 35 H 0.08 1.07 7.84 -51.93 -0.41 0.66 16 36 H 0.03 0.46 7.30 -51.93 -0.38 0.08 16 37 H 0.13 1.38 7.41 -51.93 -0.38 0.99 16 38 H 0.09 0.58 7.17 -51.93 -0.37 0.21 16 39 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 0.94 7.99 -51.93 -0.41 0.52 16 43 H 0.03 0.47 8.14 -51.92 -0.42 0.04 16 44 H 0.05 0.96 7.54 -51.93 -0.39 0.57 16 45 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 1.25 7.58 -51.93 -0.39 0.85 16 47 H 0.25 6.85 8.32 -40.82 -0.34 6.51 16 LS Contribution 373.54 15.07 5.63 5.63 Total: -1.00 -29.44 373.54 -11.47 -40.90 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -8.27 Total: 1.86 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -2.09 Total: -5.15 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -0.20 Total: -58.12 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -1.51 Total: -1.38 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.44 -11.47 -40.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895969839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.436 kcal (2) G-P(sol) polarization free energy of solvation -29.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds