Wall clock time and date at job start Tue Mar 31 2020 22:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.62968 * 2 1 4 4 C 1.53239 * 109.62911 * 120.38890 * 2 1 3 5 5 N 1.47327 * 109.11203 * 66.05674 * 4 2 1 6 6 C 1.46901 * 110.93127 * 187.17611 * 5 4 2 7 7 C 1.50698 * 109.47152 * 65.62046 * 6 5 4 8 8 C 1.39970 * 126.04744 * 90.02837 * 7 6 5 9 9 Cl 1.73604 * 125.91030 * 359.97438 * 8 7 6 10 10 N 1.30896 * 108.17970 * 179.97438 * 8 7 6 11 11 N 1.40087 * 108.19781 * 359.97438 * 10 8 7 12 12 H 0.97007 * 126.02083 * 179.97438 * 11 10 8 13 13 C 1.34941 * 107.94982 * 359.77918 * 11 10 8 14 14 C 1.50707 * 126.11888 * 180.24781 * 13 11 10 15 15 C 1.53004 * 117.49626 * 8.88170 * 14 13 11 16 16 C 1.52997 * 117.49637 * 300.22309 * 14 13 11 17 17 C 1.46897 * 111.36744 * 63.00260 * 5 4 2 18 18 C 1.53238 * 109.34146 * 296.88332 * 17 5 4 19 19 H 1.09010 * 109.78520 * 294.02152 * 18 17 5 20 20 C 1.52993 * 109.62740 * 173.54000 * 18 17 5 21 21 N 1.47075 * 108.52538 * 53.82676 * 18 17 5 22 22 C 1.36932 * 120.88290 * 128.79805 * 21 18 17 23 23 H 1.07998 * 119.99977 * 332.77312 * 22 21 18 24 24 C 1.38813 * 120.00236 * 152.77766 * 22 21 18 25 25 N 1.31616 * 119.99801 * 343.99138 * 24 22 21 26 26 Si 1.86804 * 119.99987 * 163.99126 * 24 22 21 27 27 H 1.48500 * 109.47040 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.46859 * 119.99882 * 26 24 22 29 29 H 1.48501 * 109.47002 * 239.99942 * 26 24 22 30 30 H 1.09003 * 109.47283 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47051 * 59.99980 * 1 2 3 32 32 H 1.08996 * 109.47065 * 299.99895 * 1 2 3 33 33 H 1.09002 * 109.49304 * 185.83885 * 4 2 1 34 34 H 1.09000 * 109.48860 * 305.91687 * 4 2 1 35 35 H 1.08996 * 109.46907 * 185.62123 * 6 5 4 36 36 H 1.09002 * 109.46888 * 305.61946 * 6 5 4 37 37 H 1.08994 * 115.54853 * 154.55348 * 14 13 11 38 38 H 1.08998 * 117.49752 * 359.97438 * 15 14 13 39 39 H 1.08995 * 117.49262 * 145.02327 * 15 14 13 40 40 H 1.09003 * 117.49909 * 214.97586 * 16 14 13 41 41 H 1.09002 * 117.50288 * 359.97438 * 16 14 13 42 42 H 1.08995 * 109.49205 * 176.91509 * 17 5 4 43 43 H 1.09008 * 109.48994 * 56.84149 * 17 5 4 44 44 H 1.09000 * 109.47403 * 300.12481 * 20 18 17 45 45 H 1.09002 * 109.47689 * 60.13351 * 20 18 17 46 46 H 1.09002 * 109.47240 * 180.12695 * 20 18 17 47 47 H 0.97002 * 120.00090 * 184.47002 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0447 -0.7301 1.2450 5 7 1.6747 -2.1535 1.1571 6 6 1.9978 -2.8578 2.4051 7 6 1.1385 -2.3222 3.5212 8 6 -0.1196 -2.8067 3.8972 9 17 -0.9634 -4.1313 3.1573 10 7 -0.5500 -2.0884 4.9033 11 7 0.4219 -1.1239 5.1995 12 1 0.3671 -0.4552 5.9002 13 6 1.4495 -1.2918 4.3412 14 6 2.7158 -0.4755 4.3010 15 6 2.9575 0.5102 5.4459 16 6 2.5792 1.0286 4.0562 17 6 2.3147 -2.8027 0.0052 18 6 1.8111 -2.1530 -1.2880 19 1 0.7484 -2.3598 -1.4153 20 6 2.5898 -2.7114 -2.4807 21 7 2.0241 -0.7007 -1.1951 22 6 2.6658 -0.0191 -2.1944 23 1 3.3866 -0.5271 -2.8180 24 6 2.3900 1.3248 -2.4060 25 7 1.3117 1.8660 -1.8800 26 14 3.5492 2.3651 -3.4373 27 1 4.6795 1.5259 -3.9099 28 1 2.8155 2.9122 -4.6067 29 1 4.0744 3.4843 -2.6146 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 3.1297 -0.6396 1.2972 34 1 1.5992 -0.2880 2.1361 35 1 1.8081 -3.9239 2.2801 36 1 3.0487 -2.7018 2.6487 37 1 3.5854 -0.9775 3.8770 38 1 2.2005 0.5686 6.2280 39 1 3.9862 0.6570 5.7748 40 1 3.3592 1.5162 3.4715 41 1 1.5735 1.4277 3.9238 42 1 2.0649 -3.8636 0.0006 43 1 3.3960 -2.6835 0.0750 44 1 3.6509 -2.4962 -2.3548 45 1 2.4420 -3.7898 -2.5385 46 1 2.2311 -2.2460 -3.3988 47 1 1.0843 2.7874 -2.0805 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895969839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:31 Heat of formation + Delta-G solvation = 114.408384 kcal Electronic energy + Delta-G solvation = -29083.151658 eV Core-core repulsion = 25329.630819 eV Total energy + Delta-G solvation = -3753.520839 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.62065 -39.92097 -38.16109 -37.56222 -36.46182 -34.23604 -33.32873 -32.20056 -31.59641 -29.54701 -27.45806 -27.39334 -25.73438 -24.50370 -23.52671 -23.28066 -22.42981 -22.20527 -20.35267 -20.19907 -18.42794 -17.93786 -17.12882 -16.84289 -16.36504 -16.07117 -15.96315 -15.64547 -15.59892 -15.41465 -14.91013 -14.77391 -14.46029 -13.98085 -13.54263 -13.43315 -13.27694 -13.05199 -12.84399 -12.75793 -12.72209 -12.57664 -12.50079 -12.46634 -12.22321 -12.19256 -12.09870 -11.78566 -11.72896 -11.65059 -11.52679 -11.34907 -11.11052 -10.93266 -10.40423 -10.24780 -9.52973 -8.99671 -8.41893 -7.72196 -5.13094 0.56200 0.63145 1.38057 1.48259 1.51707 1.59902 2.06873 2.58398 2.86435 3.26910 3.41307 3.45086 3.71187 3.74521 3.89460 3.96312 4.01472 4.15881 4.36763 4.46453 4.53940 4.61401 4.68514 4.70349 4.72146 4.80823 4.89655 4.96291 4.97867 4.98370 5.00944 5.05251 5.09923 5.15848 5.16743 5.18820 5.33598 5.38847 5.50206 5.63059 5.78715 5.84006 6.05131 6.14889 6.36746 6.41442 6.45895 6.57487 7.32048 8.03655 8.57161 9.34076 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.012680 B = 0.004378 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.636347 B = 6393.615153 C = 7593.264542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.200 3.800 3 H 0.056 0.944 4 C 0.066 3.934 5 N -0.532 5.532 6 C 0.135 3.865 7 C -0.219 4.219 8 C 0.135 3.865 9 Cl 0.010 6.990 10 N -0.305 5.305 11 N -0.450 5.450 12 H 0.453 0.547 13 C 0.150 3.850 14 C -0.112 4.112 15 C -0.146 4.146 16 C -0.169 4.169 17 C 0.061 3.939 18 C 0.164 3.836 19 H 0.012 0.988 20 C -0.128 4.128 21 N -0.598 5.598 22 C -0.244 4.244 23 H 0.071 0.929 24 C -0.050 4.050 25 N -0.926 5.926 26 Si 0.954 3.046 27 H -0.270 1.270 28 H -0.300 1.300 29 H -0.295 1.295 30 H 0.032 0.968 31 H 0.034 0.966 32 H 0.021 0.979 33 H 0.015 0.985 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.133 0.867 38 H 0.107 0.893 39 H 0.125 0.875 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.026 0.974 44 H 0.049 0.951 45 H 0.074 0.926 46 H 0.040 0.960 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.645 -8.001 16.147 18.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.093 3.907 3 H 0.074 0.926 4 C -0.063 4.063 5 N -0.256 5.256 6 C 0.007 3.993 7 C -0.231 4.231 8 C -0.057 4.057 9 Cl 0.038 6.962 10 N -0.132 5.132 11 N -0.162 5.162 12 H 0.302 0.698 13 C 0.020 3.980 14 C -0.132 4.132 15 C -0.183 4.183 16 C -0.207 4.207 17 C -0.068 4.068 18 C 0.058 3.942 19 H 0.030 0.970 20 C -0.186 4.186 21 N -0.322 5.322 22 C -0.375 4.375 23 H 0.089 0.911 24 C -0.245 4.245 25 N -0.574 5.574 26 Si 0.784 3.216 27 H -0.194 1.194 28 H -0.227 1.227 29 H -0.222 1.222 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.040 0.960 33 H 0.033 0.967 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.065 0.935 37 H 0.151 0.849 38 H 0.125 0.875 39 H 0.143 0.857 40 H 0.124 0.876 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.044 0.956 44 H 0.068 0.932 45 H 0.092 0.908 46 H 0.059 0.941 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.102 -7.848 16.830 18.689 hybrid contribution 1.249 1.107 -1.106 2.002 sum 3.351 -6.742 15.724 17.433 Atomic orbital electron populations 1.21695 0.98748 0.98263 0.98380 1.20235 0.91779 0.94600 0.84040 0.92596 1.22616 0.96268 0.88593 0.98864 1.61972 1.59208 1.02182 1.02256 1.20286 0.95078 0.97928 0.85987 1.19481 0.97082 1.02669 1.03839 1.22603 0.93282 0.94278 0.95491 1.98377 1.77128 1.41257 1.79470 1.77262 1.13302 1.04020 1.18618 1.45899 1.12564 1.28129 1.29612 0.69828 1.20119 0.90968 0.95758 0.91175 1.20713 0.93743 0.91144 1.07616 1.23207 1.04894 0.99360 0.90847 1.23111 1.03597 0.93385 1.00575 1.22482 0.95619 0.98098 0.90649 1.20650 0.95812 0.84262 0.93525 0.97017 1.21698 0.99644 0.99910 0.97304 1.44521 1.66794 1.02534 1.18354 1.19503 1.15104 0.92406 1.10476 0.91090 1.25637 0.97998 0.99639 1.01182 1.70142 1.25257 1.13368 1.48604 0.85394 0.79182 0.79027 0.77982 1.19445 1.22722 1.22213 0.94929 0.94685 0.96037 0.96693 0.90576 0.89470 0.93533 0.84888 0.87479 0.85667 0.87564 0.89331 0.89511 0.95565 0.93229 0.90760 0.94128 0.94735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.34 8.96 71.98 0.64 -4.70 16 2 C 0.20 9.35 2.34 44.96 0.11 9.46 16 3 H 0.06 3.03 6.12 -2.39 -0.01 3.01 16 4 C 0.07 2.42 4.25 86.30 0.37 2.79 16 5 N -0.53 -17.73 4.11 -898.67 -3.70 -21.43 16 6 C 0.14 3.65 5.10 85.56 0.44 4.08 16 7 C -0.22 -5.94 4.99 -20.12 -0.10 -6.04 16 8 C 0.13 3.89 7.84 85.25 0.67 4.56 16 9 Cl 0.01 0.27 29.04 -2.72 -0.08 0.19 16 10 N -0.31 -8.60 12.70 -49.68 -0.63 -9.24 16 11 N -0.45 -9.84 7.23 -48.00 -0.35 -10.19 16 12 H 0.45 6.78 7.97 -213.32 -1.70 5.08 16 13 C 0.15 3.47 5.75 41.41 0.24 3.70 16 14 C -0.11 -2.09 4.56 -11.54 -0.05 -2.14 16 15 C -0.15 -1.82 10.15 30.62 0.31 -1.51 16 16 C -0.17 -3.18 9.16 30.62 0.28 -2.90 16 17 C 0.06 2.02 4.92 86.38 0.42 2.45 16 18 C 0.16 6.66 3.25 44.96 0.15 6.80 16 19 H 0.01 0.54 7.63 -2.38 -0.02 0.52 16 20 C -0.13 -4.58 7.94 71.98 0.57 -4.01 16 21 N -0.60 -28.92 2.73 -650.66 -1.78 -30.70 16 22 C -0.24 -12.91 8.71 84.03 0.73 -12.18 16 23 H 0.07 3.66 6.18 -2.91 -0.02 3.64 16 24 C -0.05 -2.70 4.96 84.86 0.42 -2.28 16 25 N -0.93 -53.33 9.73 21.65 0.21 -53.12 16 26 Si 0.95 44.48 29.59 68.60 2.03 46.51 16 27 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 28 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 29 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 30 H 0.03 1.52 7.08 -2.39 -0.02 1.50 16 31 H 0.03 1.90 6.87 -2.38 -0.02 1.88 16 32 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.08 2.64 4.24 -2.39 -0.01 2.63 16 35 H 0.09 2.18 7.84 -2.39 -0.02 2.16 16 36 H 0.05 1.15 7.30 -2.39 -0.02 1.13 16 37 H 0.13 2.46 7.41 -2.39 -0.02 2.44 16 38 H 0.11 0.98 7.17 -2.39 -0.02 0.96 16 39 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.11 2.09 8.14 -2.39 -0.02 2.08 16 41 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.09 2.44 7.99 -2.39 -0.02 2.42 16 43 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 44 H 0.05 1.78 7.54 -2.39 -0.02 1.76 16 45 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.04 1.60 7.58 -2.39 -0.02 1.58 16 47 H 0.24 13.80 8.32 -92.71 -0.77 13.03 16 Total: -1.00 -64.72 373.54 0.19 -64.52 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -0.71 Total: 15.36 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 5.19 Total: -1.91 kcal Atomic # 7 Polarization: -118.43 SS G_CDS: -6.24 Total: -124.67 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -0.08 Total: 0.19 kcal Total: -64.72 0.19 -64.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895969839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.930 kcal (2) G-P(sol) polarization free energy of solvation -64.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds