Wall clock time and date at job start Tue Mar 31 2020 21:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46891 * 2 1 4 4 O 1.42895 * 109.47455 * 119.99968 * 2 1 3 5 5 C 1.42902 * 114.00093 * 149.99992 * 4 2 1 6 6 C 1.50702 * 109.46771 * 180.02562 * 5 4 2 7 7 N 1.29946 * 126.28749 * 270.02288 * 6 5 4 8 8 O 1.21302 * 110.25563 * 179.69049 * 7 6 5 9 9 C 1.33642 * 109.80289 * 0.46549 * 8 7 6 10 10 C 1.50703 * 126.54768 * 179.80041 * 9 8 7 11 11 N 1.46897 * 109.47390 * 269.68942 * 10 9 8 12 12 C 1.46905 * 110.99826 * 169.99874 * 11 10 9 13 13 C 1.53243 * 109.33672 * 187.25448 * 12 11 10 14 14 N 1.47076 * 108.52280 * 306.17389 * 13 12 11 15 15 C 1.34777 * 120.88062 * 231.18540 * 14 13 12 16 16 O 1.21687 * 120.00006 * 5.22924 * 15 14 13 17 17 C 1.46376 * 120.00313 * 185.22734 * 15 14 13 18 18 H 1.07997 * 119.99552 * 354.99977 * 17 15 14 19 19 C 1.40044 * 120.00321 * 175.00114 * 17 15 14 20 20 N 1.30673 * 119.99689 * 359.97438 * 19 17 15 21 21 Si 1.86795 * 120.00192 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47087 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.47042 * 299.99758 * 21 19 17 24 24 H 1.48503 * 109.47023 * 59.99987 * 21 19 17 25 25 C 1.47077 * 118.23996 * 51.45605 * 14 13 12 26 26 C 1.46898 * 111.00153 * 294.30172 * 11 10 9 27 27 N 1.31128 * 106.90378 * 359.54196 * 9 8 7 28 28 H 1.09003 * 109.46767 * 299.99896 * 1 2 3 29 29 H 1.09002 * 109.46988 * 60.00112 * 1 2 3 30 30 H 1.08997 * 109.46672 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47260 * 240.00605 * 2 1 3 32 32 H 1.09004 * 109.46980 * 60.00043 * 3 2 1 33 33 H 1.08993 * 109.47026 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46852 * 300.00136 * 3 2 1 35 35 H 1.08994 * 109.47055 * 60.00531 * 5 4 2 36 36 H 1.08998 * 109.46998 * 299.99864 * 5 4 2 37 37 H 1.09003 * 109.46865 * 149.68963 * 10 9 8 38 38 H 1.09003 * 109.47067 * 29.69539 * 10 9 8 39 39 H 1.08994 * 109.49159 * 67.30254 * 12 11 10 40 40 H 1.08999 * 109.51460 * 307.22708 * 12 11 10 41 41 H 1.08999 * 109.62657 * 186.46027 * 13 12 11 42 42 H 1.09008 * 109.62520 * 65.87988 * 13 12 11 43 43 H 0.97000 * 120.00181 * 180.02562 * 20 19 17 44 44 H 1.09007 * 109.62715 * 68.25082 * 25 14 13 45 45 H 1.09000 * 109.63081 * 188.83321 * 25 14 13 46 46 H 1.09001 * 109.49368 * 292.70476 * 26 11 10 47 47 H 1.08999 * 109.49029 * 52.75792 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2661 -1.3244 0.9885 6 6 3.6694 -1.9987 2.2745 7 7 4.3686 -1.4700 3.2337 8 8 4.5176 -2.2688 4.1343 9 6 3.9177 -3.4212 3.8213 10 6 3.8722 -4.6679 4.6667 11 7 5.0215 -5.5229 4.3408 12 6 5.1452 -6.6272 5.3017 13 6 6.4507 -7.3852 5.0380 14 7 6.4810 -7.7855 3.6231 15 6 6.7338 -9.0615 3.2704 16 8 6.8465 -9.9185 4.1269 17 6 6.8728 -9.4165 1.8572 18 1 6.6933 -8.6739 1.0938 19 6 7.2386 -10.7189 1.4950 20 7 7.4563 -11.6171 2.4187 21 14 7.4167 -11.1716 -0.3085 22 1 7.8096 -12.5991 -0.4241 23 1 6.1219 -10.9564 -1.0031 24 1 8.4607 -10.3193 -0.9321 25 6 6.2342 -6.7552 2.6030 26 6 4.9314 -6.0232 2.9626 27 7 3.3715 -3.2582 2.6404 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 4.0200 -0.5873 0.7124 36 1 3.1810 -2.0706 0.1986 37 1 2.9479 -5.2096 4.4658 38 1 3.9107 -4.3936 5.7209 39 1 4.3007 -7.3064 5.1859 40 1 5.1548 -6.2281 6.3159 41 1 6.4933 -8.2720 5.6704 42 1 7.3003 -6.7372 5.2535 43 1 7.7100 -12.5191 2.1679 44 1 7.0633 -6.0477 2.5889 45 1 6.1335 -7.2252 1.6247 46 1 4.0897 -6.7108 2.8795 47 1 4.7856 -5.1856 2.2805 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930629135.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:09 Heat of formation + Delta-G solvation = 5.625774 kcal Electronic energy + Delta-G solvation = -29255.493931 eV Core-core repulsion = 25056.546760 eV Total energy + Delta-G solvation = -4198.947172 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.74250 -39.01476 -38.91528 -36.83931 -35.97848 -34.15598 -33.20068 -32.55106 -32.20982 -30.66780 -28.58186 -28.05306 -27.51668 -26.43099 -24.73769 -23.52077 -23.18112 -21.78281 -21.55475 -20.74008 -18.92118 -18.33981 -17.76439 -17.09711 -16.70572 -16.07756 -15.83950 -15.72162 -15.19086 -15.04497 -14.89952 -14.37475 -14.21257 -14.12309 -13.88582 -13.58128 -13.31148 -13.01372 -12.91608 -12.61886 -12.52067 -12.28059 -12.20029 -11.90718 -11.87830 -11.66302 -11.46770 -11.24430 -11.20018 -11.15721 -11.04518 -10.92446 -10.80964 -10.62368 -10.27308 -10.17535 -10.08589 -9.99627 -8.88085 -8.47298 -7.62745 -7.25042 -6.22728 -4.67904 0.95035 1.86689 2.63679 3.04417 3.13569 3.18794 3.20209 3.62533 3.86837 3.94446 4.07946 4.43651 4.51020 4.55873 4.57320 4.65304 4.74016 4.78626 4.86840 5.11113 5.17079 5.19372 5.28718 5.30412 5.36488 5.41784 5.41854 5.52234 5.63194 5.64403 5.73913 5.77195 5.78933 5.80014 5.82622 6.01416 6.16529 6.40100 6.47921 6.64958 6.70684 6.89206 7.04671 7.42251 7.55841 7.99671 8.09356 8.32080 8.99071 9.39421 10.53975 10.72496 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.002361 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.873831 B =11855.022038 C =13387.776365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.082 3.918 3 C -0.177 4.177 4 O -0.377 6.377 5 C 0.158 3.842 6 C 0.167 3.833 7 N -0.368 5.368 8 O 0.092 5.908 9 C 0.203 3.797 10 C 0.142 3.858 11 N -0.533 5.533 12 C 0.048 3.952 13 C 0.125 3.875 14 N -0.645 5.645 15 C 0.560 3.440 16 O -0.578 6.578 17 C -0.545 4.545 18 H 0.072 0.928 19 C 0.088 3.912 20 N -0.767 5.767 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.268 1.268 24 H -0.268 1.268 25 C 0.131 3.869 26 C 0.037 3.963 27 N -0.468 5.468 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.042 0.958 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.051 0.949 43 H 0.269 0.731 44 H 0.049 0.951 45 H 0.096 0.904 46 H 0.044 0.956 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.056 21.939 -2.620 24.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.025 3.975 3 C -0.234 4.234 4 O -0.295 6.295 5 C 0.080 3.920 6 C -0.106 4.106 7 N -0.074 5.074 8 O 0.030 5.970 9 C -0.018 4.018 10 C 0.012 3.988 11 N -0.260 5.260 12 C -0.080 4.080 13 C 0.000 4.000 14 N -0.384 5.384 15 C 0.366 3.634 16 O -0.461 6.461 17 C -0.581 4.581 18 H 0.090 0.910 19 C -0.132 4.132 20 N -0.396 5.396 21 Si 0.731 3.269 22 H -0.205 1.205 23 H -0.192 1.192 24 H -0.192 1.192 25 C 0.006 3.994 26 C -0.092 4.092 27 N -0.202 5.202 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.131 0.869 39 H 0.061 0.939 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.114 0.886 46 H 0.063 0.937 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.563 22.242 -2.314 24.731 hybrid contribution -0.477 -0.563 -1.133 1.352 sum -11.039 21.679 -3.448 24.571 Atomic orbital electron populations 1.21867 0.93167 1.03051 1.02629 1.22153 0.95325 0.92392 0.87661 1.22325 1.01691 0.96601 1.02815 1.87976 1.35266 1.69953 1.36320 1.20362 0.87067 0.95394 0.89136 1.25250 0.97790 0.88892 0.98647 1.74629 1.19038 1.15097 0.98676 1.85314 1.56298 1.19111 1.36241 1.28666 0.90237 0.90935 0.91952 1.20554 0.95608 0.85412 0.97235 1.61957 1.38215 1.21421 1.04427 1.22581 0.99747 0.90958 0.94739 1.21221 0.94240 0.98154 0.86336 1.48269 1.77119 1.09431 1.03583 1.18236 0.76134 0.78693 0.90308 1.90589 1.55727 1.47167 1.52590 1.20928 1.50041 0.96457 0.90685 0.91040 1.25721 0.92924 0.95993 0.98565 1.69999 1.32851 1.03049 1.33701 0.86455 0.79383 0.77895 0.83182 1.20531 1.19235 1.19235 1.21553 0.93852 0.90105 0.93925 1.22802 0.99475 0.98644 0.88282 1.71911 1.22716 1.15319 1.10302 0.91750 0.90973 0.91710 0.91644 0.91660 0.92337 0.91346 0.90423 0.89712 0.89861 0.86914 0.93932 0.90108 0.89147 0.93040 0.92001 0.93271 0.88577 0.93740 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.56 37.16 0.36 -0.62 16 2 C 0.08 0.61 3.34 -26.73 -0.09 0.52 16 3 C -0.18 -1.12 9.53 37.16 0.35 -0.77 16 4 O -0.38 -4.07 9.97 -35.23 -0.35 -4.42 16 5 C 0.16 1.62 6.37 36.01 0.23 1.85 16 6 C 0.17 2.20 7.85 -156.37 -1.23 0.97 16 7 N -0.37 -5.11 12.16 30.90 0.38 -4.74 16 8 O 0.09 1.22 11.31 18.10 0.20 1.42 16 9 C 0.20 2.55 7.13 -13.06 -0.09 2.45 16 10 C 0.14 1.52 5.59 -4.98 -0.03 1.49 16 11 N -0.53 -7.33 4.62 -235.46 -1.09 -8.41 16 12 C 0.05 0.68 5.62 -3.70 -0.02 0.66 16 13 C 0.13 2.33 6.61 -3.60 -0.02 2.31 16 14 N -0.65 -14.38 3.00 -173.84 -0.52 -14.90 16 15 C 0.56 15.66 7.63 -12.99 -0.10 15.56 16 16 O -0.58 -18.36 14.49 5.20 0.08 -18.28 16 17 C -0.54 -15.02 8.86 -35.63 -0.32 -15.33 16 18 H 0.07 1.79 5.74 -52.49 -0.30 1.49 16 19 C 0.09 2.41 5.50 -17.37 -0.10 2.32 16 20 N -0.77 -22.68 11.84 55.55 0.66 -22.03 16 21 Si 0.91 19.82 29.56 -169.99 -5.02 14.79 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 C 0.13 2.43 6.50 -3.36 -0.02 2.41 16 26 C 0.04 0.57 5.49 -3.46 -0.02 0.55 16 27 N -0.47 -6.41 10.65 -9.87 -0.11 -6.52 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.40 7.79 -51.93 -0.40 0.00 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.37 7.87 -51.93 -0.41 -0.04 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.66 7.87 -51.93 -0.41 0.25 16 36 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 37 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 38 H 0.11 0.88 7.97 -51.93 -0.41 0.47 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.89 7.99 -51.93 -0.41 0.48 16 41 H 0.09 1.87 7.04 -51.93 -0.37 1.50 16 42 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 43 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 44 H 0.05 0.89 8.14 -51.92 -0.42 0.46 16 45 H 0.10 1.87 5.46 -51.93 -0.28 1.58 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.08 1.15 6.38 -51.93 -0.33 0.81 16 LS Contribution 386.37 15.07 5.82 5.82 Total: -1.00 -35.32 386.37 -8.16 -43.48 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -7.11 Total: -0.59 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: -1.09 Total: 14.37 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.68 Total: -56.59 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.07 Total: -21.28 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.32 -8.16 -43.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930629135.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.110 kcal (2) G-P(sol) polarization free energy of solvation -35.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds