Wall clock time and date at job start Tue Mar 31 2020 21:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.52334 * 2 1 4 4 C 1.53191 * 109.50080 * 239.92139 * 2 1 3 5 5 N 1.46923 * 108.77882 * 185.41381 * 4 2 1 6 6 C 1.36938 * 120.63271 * 233.58445 * 5 4 2 7 7 H 1.07994 * 120.00252 * 151.84089 * 6 5 4 8 8 C 1.38814 * 119.99664 * 331.84538 * 6 5 4 9 9 N 1.31612 * 120.00145 * 343.07856 * 8 6 5 10 10 Si 1.86798 * 119.99705 * 163.07761 * 8 6 5 11 11 H 1.48505 * 109.47113 * 59.99863 * 10 8 6 12 12 H 1.48503 * 109.46932 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47293 * 299.99963 * 10 8 6 14 14 C 1.46934 * 118.73887 * 53.60689 * 5 4 2 15 15 C 1.53193 * 108.76140 * 306.38266 * 14 5 4 16 16 C 1.53035 * 109.49880 * 120.08069 * 2 1 3 17 17 H 1.09007 * 109.46100 * 61.31031 * 16 2 1 18 18 N 1.46507 * 109.45786 * 301.33842 * 16 2 1 19 19 C 1.34779 * 119.99449 * 154.97454 * 18 16 2 20 20 O 1.21282 * 120.00378 * 359.97438 * 19 18 16 21 21 C 1.50708 * 119.99632 * 180.02562 * 19 18 16 22 22 N 1.46501 * 109.47068 * 179.97438 * 21 19 18 23 23 C 1.46409 * 119.53681 * 89.99465 * 22 21 19 24 24 C 1.53039 * 109.51485 * 144.16430 * 23 22 21 25 25 C 1.50803 * 109.23130 * 46.67290 * 24 23 22 26 26 O 1.21233 * 120.01843 * 145.77361 * 25 24 23 27 27 N 1.34625 * 119.93082 * 325.88388 * 25 24 23 28 28 C 1.34291 * 119.52981 * 270.01813 * 22 21 19 29 29 O 1.21537 * 119.21398 * 5.66881 * 28 22 21 30 30 H 1.08998 * 109.47406 * 299.91904 * 1 2 3 31 31 H 1.09001 * 109.47484 * 59.92123 * 1 2 3 32 32 H 1.09004 * 109.47119 * 179.91627 * 1 2 3 33 33 H 1.09012 * 109.58485 * 305.20184 * 4 2 1 34 34 H 1.08997 * 109.59098 * 65.48080 * 4 2 1 35 35 H 0.97001 * 120.00023 * 180.02562 * 9 8 6 36 36 H 1.08991 * 109.58576 * 66.17678 * 14 5 4 37 37 H 1.09001 * 109.58474 * 186.47002 * 14 5 4 38 38 H 1.08998 * 109.51345 * 294.70103 * 15 14 5 39 39 H 1.09002 * 109.48450 * 174.59824 * 15 14 5 40 40 H 0.96990 * 120.00205 * 334.97392 * 18 16 2 41 41 H 1.09000 * 109.47125 * 59.99666 * 21 19 18 42 42 H 1.09001 * 109.46652 * 299.99598 * 21 19 18 43 43 H 1.09008 * 109.45896 * 24.15723 * 23 22 21 44 44 H 1.08995 * 109.45681 * 264.17837 * 23 22 21 45 45 H 1.09005 * 109.51598 * 166.60776 * 24 23 22 46 46 H 1.08995 * 109.52432 * 286.72504 * 24 23 22 47 47 H 0.97000 * 119.49188 * 184.33874 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7237 -1.2496 5 7 3.5046 -0.8291 -1.1696 6 6 4.2936 -0.3792 -2.1944 7 1 5.2961 -0.0325 -1.9920 8 6 3.8047 -0.3689 -3.4936 9 7 2.7413 -1.0804 -3.8023 10 14 4.6560 0.6550 -4.8037 11 1 6.0613 0.1988 -4.9528 12 1 3.9442 0.4949 -6.0971 13 1 4.6396 2.0848 -4.4028 14 6 4.1053 -1.4267 0.0308 15 6 3.5708 -0.6947 1.2658 16 6 2.0408 -0.7230 1.2483 17 1 1.6969 -1.7574 1.2351 18 7 1.5264 -0.0529 2.4453 19 6 1.3979 -0.7384 3.5986 20 8 1.7076 -1.9101 3.6454 21 6 0.8683 -0.0492 4.8297 22 7 0.8243 -1.0018 5.9418 23 6 1.9894 -1.1440 6.8170 24 6 1.5228 -1.3995 8.2520 25 6 0.4505 -2.4598 8.2442 26 8 0.3671 -3.2447 9.1644 27 7 -0.4123 -2.5351 7.2136 28 6 -0.2841 -1.7327 6.1438 29 8 -1.1927 -1.6670 5.3394 30 1 -0.3634 0.5126 0.8907 31 1 -0.3634 0.5150 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6052 -1.7216 -1.2981 34 1 1.7616 -0.1592 -2.1390 35 1 2.3999 -1.0734 -4.7102 36 1 3.8375 -2.4817 0.0868 37 1 5.1898 -1.3267 -0.0149 38 1 3.9156 0.3393 1.2538 39 1 3.9336 -1.1892 2.1669 40 1 1.2784 0.8840 2.4077 41 1 -0.1362 0.3254 4.6327 42 1 1.5221 0.7833 5.0896 43 1 2.5813 -0.2292 6.7850 44 1 2.5978 -1.9824 6.4781 45 1 2.3658 -1.7385 8.8541 46 1 1.1210 -0.4783 8.6738 47 1 -1.1381 -3.1779 7.2444 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944017079.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:34 Heat of formation + Delta-G solvation = -72.608306 kcal Electronic energy + Delta-G solvation = -30212.219880 eV Core-core repulsion = 26009.880224 eV Total energy + Delta-G solvation = -4202.339656 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.99751 -39.94928 -39.11102 -37.68121 -36.47723 -34.96575 -34.50657 -32.47321 -31.90317 -31.82304 -29.65886 -27.91572 -25.92407 -25.47329 -24.93762 -23.42257 -22.27311 -20.90324 -20.51599 -19.68431 -19.07810 -18.68477 -18.06783 -17.47110 -16.81807 -16.56620 -16.19038 -15.45807 -15.23925 -15.00459 -14.90685 -14.78552 -14.67180 -13.92077 -13.85718 -13.66955 -13.56476 -13.19889 -12.97842 -12.89446 -12.60442 -12.45078 -12.11956 -11.94060 -11.47833 -11.31932 -11.08859 -11.05111 -10.77265 -10.66373 -10.63046 -10.55200 -10.38887 -10.25962 -10.12519 -10.02751 -9.77241 -9.57779 -9.09157 -8.73346 -8.47253 -6.70255 -5.81245 -3.23953 1.36320 1.90024 2.61225 2.70200 2.84982 3.34609 3.37915 3.42636 3.43348 3.89873 4.05144 4.41593 4.47304 4.48882 4.72101 4.80766 4.89164 5.01569 5.21579 5.25416 5.31508 5.44346 5.55045 5.56475 5.68187 5.72399 5.85780 6.06338 6.08004 6.13175 6.22387 6.34029 6.46114 6.47217 6.57090 6.68889 6.76373 6.91865 6.96523 6.97231 7.12565 7.31672 7.57620 7.67361 7.77498 7.81160 8.32663 8.42692 9.18700 9.81794 10.38964 11.27467 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.029872 B = 0.002297 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.115796 B =12187.153131 C =12569.793673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 H 0.067 0.933 4 C 0.181 3.819 5 N -0.593 5.593 6 C -0.254 4.254 7 H 0.065 0.935 8 C 0.003 3.997 9 N -0.902 5.902 10 Si 0.903 3.097 11 H -0.283 1.283 12 H -0.290 1.290 13 H -0.284 1.284 14 C 0.147 3.853 15 C -0.138 4.138 16 C 0.158 3.842 17 H 0.081 0.919 18 N -0.719 5.719 19 C 0.493 3.507 20 O -0.532 6.532 21 C 0.109 3.891 22 N -0.599 5.599 23 C 0.109 3.891 24 C -0.157 4.157 25 C 0.524 3.476 26 O -0.505 6.505 27 N -0.674 5.674 28 C 0.715 3.285 29 O -0.549 6.549 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.020 0.980 34 H 0.092 0.908 35 H 0.255 0.745 36 H 0.019 0.981 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.396 0.604 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.127 0.873 46 H 0.115 0.885 47 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.798 6.041 22.968 24.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.142 4.142 3 H 0.086 0.914 4 C 0.054 3.946 5 N -0.315 5.315 6 C -0.384 4.384 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.546 5.546 10 Si 0.732 3.268 11 H -0.209 1.209 12 H -0.216 1.216 13 H -0.210 1.210 14 C 0.020 3.980 15 C -0.178 4.178 16 C 0.054 3.946 17 H 0.099 0.901 18 N -0.370 5.370 19 C 0.277 3.723 20 O -0.408 6.408 21 C -0.018 4.018 22 N -0.335 5.335 23 C -0.013 4.013 24 C -0.197 4.197 25 C 0.312 3.688 26 O -0.377 6.377 27 N -0.343 5.343 28 C 0.416 3.584 29 O -0.423 6.423 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.110 0.890 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.229 0.771 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.122 0.878 44 H 0.101 0.899 45 H 0.145 0.855 46 H 0.133 0.867 47 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -4.010 4.902 22.873 23.733 hybrid contribution 0.015 0.642 -0.756 0.992 sum -3.995 5.544 22.117 23.148 Atomic orbital electron populations 1.21724 0.95811 1.01555 1.00605 1.22155 0.94741 1.00551 0.96780 0.91422 1.20801 0.83034 0.97107 0.93644 1.44087 1.01730 1.69363 1.16316 1.19133 0.98021 1.35478 0.85744 0.91705 1.25059 0.98526 0.98967 0.97030 1.70013 1.25624 1.40081 1.18915 0.86369 0.78978 0.80427 0.80981 1.20882 1.21634 1.21038 1.20872 0.96638 0.94282 0.86204 1.22372 0.94815 1.01226 0.99408 1.21064 0.93711 0.97221 0.82570 0.90121 1.46258 1.65898 1.14329 1.10467 1.20946 0.78589 0.87789 0.85005 1.90715 1.49504 1.15980 1.84620 1.21383 1.05042 0.90669 0.84669 1.46501 1.13678 1.42474 1.30849 1.21701 0.87746 1.04886 0.87009 1.22270 0.99024 0.99275 0.99151 1.20989 0.81776 0.85013 0.80998 1.90799 1.71226 1.40772 1.34907 1.44257 1.32514 1.39239 1.18310 1.15501 0.83130 0.78550 0.81195 1.91026 1.39908 1.66530 1.44787 0.93803 0.92632 0.93024 0.96169 0.89026 0.93508 0.96286 0.92584 0.92314 0.92837 0.77065 0.86489 0.86813 0.87797 0.89860 0.85461 0.86727 0.73218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.03 37.15 0.34 -1.79 16 2 C -0.12 -2.13 2.46 -90.51 -0.22 -2.35 16 3 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.18 4.16 4.58 -3.71 -0.02 4.14 16 5 N -0.59 -14.52 2.99 -172.32 -0.52 -15.03 16 6 C -0.25 -6.83 9.58 -15.06 -0.14 -6.97 16 7 H 0.07 1.71 7.88 -52.49 -0.41 1.29 16 8 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 9 N -0.90 -25.80 11.19 55.49 0.62 -25.18 16 10 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.15 3.09 6.52 -3.71 -0.02 3.07 16 15 C -0.14 -2.38 5.65 -26.61 -0.15 -2.53 16 16 C 0.16 2.61 1.88 -67.89 -0.13 2.48 16 17 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16 18 N -0.72 -8.92 4.36 -53.76 -0.23 -9.15 16 19 C 0.49 6.28 7.86 -10.98 -0.09 6.19 16 20 O -0.53 -9.19 16.09 5.56 0.09 -9.10 16 21 C 0.11 0.87 5.82 -5.19 -0.03 0.84 16 22 N -0.60 -5.17 2.28 -181.15 -0.41 -5.59 16 23 C 0.11 0.58 6.64 -4.07 -0.03 0.55 16 24 C -0.16 -0.67 6.28 -27.81 -0.17 -0.85 16 25 C 0.52 4.44 7.76 -11.00 -0.09 4.35 16 26 O -0.50 -5.89 17.93 5.60 0.10 -5.79 16 27 N -0.67 -6.27 5.18 -16.00 -0.08 -6.35 16 28 C 0.71 8.00 8.21 -87.74 -0.72 7.28 16 29 O -0.55 -8.16 16.66 5.33 0.09 -8.07 16 30 H 0.04 0.56 7.36 -51.93 -0.38 0.18 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 34 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 35 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.40 3.71 8.31 -40.82 -0.34 3.37 16 41 H 0.12 0.91 7.43 -51.93 -0.39 0.52 16 42 H 0.11 0.43 7.82 -51.93 -0.41 0.02 16 43 H 0.10 0.24 7.80 -51.92 -0.40 -0.17 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.13 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.43 3.68 8.86 -40.82 -0.36 3.32 16 LS Contribution 381.56 15.07 5.75 5.75 Total: -1.00 -36.55 381.56 -8.36 -44.91 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -7.18 Total: 2.96 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: -1.56 Total: 14.41 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: -0.63 Total: -61.31 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: 0.28 Total: -22.95 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.55 -8.36 -44.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944017079.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.700 kcal (2) G-P(sol) polarization free energy of solvation -36.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds