Wall clock time and date at job start Tue Mar 31 2020 21:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.52334 * 2 1 4 4 C 1.53191 * 109.50080 * 239.92139 * 2 1 3 5 5 N 1.46923 * 108.77882 * 185.41381 * 4 2 1 6 6 C 1.36938 * 120.63271 * 233.58445 * 5 4 2 7 7 H 1.07994 * 120.00252 * 151.84089 * 6 5 4 8 8 C 1.38814 * 119.99664 * 331.84538 * 6 5 4 9 9 N 1.31612 * 120.00145 * 343.07856 * 8 6 5 10 10 Si 1.86798 * 119.99705 * 163.07761 * 8 6 5 11 11 H 1.48505 * 109.47113 * 59.99863 * 10 8 6 12 12 H 1.48503 * 109.46932 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47293 * 299.99963 * 10 8 6 14 14 C 1.46934 * 118.73887 * 53.60689 * 5 4 2 15 15 C 1.53193 * 108.76140 * 306.38266 * 14 5 4 16 16 C 1.53035 * 109.49880 * 120.08069 * 2 1 3 17 17 H 1.09007 * 109.46100 * 61.31031 * 16 2 1 18 18 N 1.46507 * 109.45786 * 301.33842 * 16 2 1 19 19 C 1.34779 * 119.99449 * 154.97454 * 18 16 2 20 20 O 1.21282 * 120.00378 * 359.97438 * 19 18 16 21 21 C 1.50708 * 119.99632 * 180.02562 * 19 18 16 22 22 N 1.46501 * 109.47068 * 179.97438 * 21 19 18 23 23 C 1.46409 * 119.53681 * 89.99465 * 22 21 19 24 24 C 1.53039 * 109.51485 * 144.16430 * 23 22 21 25 25 C 1.50803 * 109.23130 * 46.67290 * 24 23 22 26 26 O 1.21233 * 120.01843 * 145.77361 * 25 24 23 27 27 N 1.34625 * 119.93082 * 325.88388 * 25 24 23 28 28 C 1.34291 * 119.52981 * 270.01813 * 22 21 19 29 29 O 1.21537 * 119.21398 * 5.66881 * 28 22 21 30 30 H 1.08998 * 109.47406 * 299.91904 * 1 2 3 31 31 H 1.09001 * 109.47484 * 59.92123 * 1 2 3 32 32 H 1.09004 * 109.47119 * 179.91627 * 1 2 3 33 33 H 1.09012 * 109.58485 * 305.20184 * 4 2 1 34 34 H 1.08997 * 109.59098 * 65.48080 * 4 2 1 35 35 H 0.97001 * 120.00023 * 180.02562 * 9 8 6 36 36 H 1.08991 * 109.58576 * 66.17678 * 14 5 4 37 37 H 1.09001 * 109.58474 * 186.47002 * 14 5 4 38 38 H 1.08998 * 109.51345 * 294.70103 * 15 14 5 39 39 H 1.09002 * 109.48450 * 174.59824 * 15 14 5 40 40 H 0.96990 * 120.00205 * 334.97392 * 18 16 2 41 41 H 1.09000 * 109.47125 * 59.99666 * 21 19 18 42 42 H 1.09001 * 109.46652 * 299.99598 * 21 19 18 43 43 H 1.09008 * 109.45896 * 24.15723 * 23 22 21 44 44 H 1.08995 * 109.45681 * 264.17837 * 23 22 21 45 45 H 1.09005 * 109.51598 * 166.60776 * 24 23 22 46 46 H 1.08995 * 109.52432 * 286.72504 * 24 23 22 47 47 H 0.97000 * 119.49188 * 184.33874 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7237 -1.2496 5 7 3.5046 -0.8291 -1.1696 6 6 4.2936 -0.3792 -2.1944 7 1 5.2961 -0.0325 -1.9920 8 6 3.8047 -0.3689 -3.4936 9 7 2.7413 -1.0804 -3.8023 10 14 4.6560 0.6550 -4.8037 11 1 6.0613 0.1988 -4.9528 12 1 3.9442 0.4949 -6.0971 13 1 4.6396 2.0848 -4.4028 14 6 4.1053 -1.4267 0.0308 15 6 3.5708 -0.6947 1.2658 16 6 2.0408 -0.7230 1.2483 17 1 1.6969 -1.7574 1.2351 18 7 1.5264 -0.0529 2.4453 19 6 1.3979 -0.7384 3.5986 20 8 1.7076 -1.9101 3.6454 21 6 0.8683 -0.0492 4.8297 22 7 0.8243 -1.0018 5.9418 23 6 1.9894 -1.1440 6.8170 24 6 1.5228 -1.3995 8.2520 25 6 0.4505 -2.4598 8.2442 26 8 0.3671 -3.2447 9.1644 27 7 -0.4123 -2.5351 7.2136 28 6 -0.2841 -1.7327 6.1438 29 8 -1.1927 -1.6670 5.3394 30 1 -0.3634 0.5126 0.8907 31 1 -0.3634 0.5150 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6052 -1.7216 -1.2981 34 1 1.7616 -0.1592 -2.1390 35 1 2.3999 -1.0734 -4.7102 36 1 3.8375 -2.4817 0.0868 37 1 5.1898 -1.3267 -0.0149 38 1 3.9156 0.3393 1.2538 39 1 3.9336 -1.1892 2.1669 40 1 1.2784 0.8840 2.4077 41 1 -0.1362 0.3254 4.6327 42 1 1.5221 0.7833 5.0896 43 1 2.5813 -0.2292 6.7850 44 1 2.5978 -1.9824 6.4781 45 1 2.3658 -1.7385 8.8541 46 1 1.1210 -0.4783 8.6738 47 1 -1.1381 -3.1779 7.2444 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944017079.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:33 Heat of formation + Delta-G solvation = -100.716784 kcal Electronic energy + Delta-G solvation = -30213.438755 eV Core-core repulsion = 26009.880224 eV Total energy + Delta-G solvation = -4203.558531 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.71340 -41.02841 -40.02221 -39.08788 -37.24529 -36.11920 -35.68608 -33.97919 -33.48601 -32.51017 -31.25232 -28.83743 -27.55272 -26.60020 -25.98997 -24.36572 -23.67192 -22.49818 -21.58668 -20.99585 -19.99228 -19.37434 -18.89516 -18.72150 -18.18766 -17.47693 -17.23759 -16.78345 -16.29588 -16.13412 -15.77115 -15.68535 -15.53584 -15.47886 -15.35693 -14.85172 -14.62641 -14.55684 -14.19737 -14.10956 -13.62876 -13.46218 -13.19608 -12.98765 -12.90366 -12.84343 -12.53778 -12.52125 -12.44675 -12.03491 -11.86653 -11.82779 -11.73541 -11.54881 -11.37923 -11.37732 -11.25916 -11.07144 -10.54968 -9.93155 -9.90061 -8.70494 -7.87213 -5.33759 0.66104 1.22353 1.49192 1.50800 1.58168 1.71451 1.94164 2.18933 2.39636 2.52249 3.28011 3.41477 3.62957 3.65593 3.77083 3.88097 4.02066 4.09170 4.18000 4.22361 4.37485 4.43106 4.48397 4.59186 4.61541 4.71037 4.76135 4.85755 4.88209 4.94129 4.95114 5.03320 5.10053 5.11066 5.18925 5.32293 5.35640 5.44957 5.51444 5.61326 5.66472 5.74155 6.28054 6.38840 6.44258 6.67538 7.03419 7.14286 7.37483 7.84128 8.37346 9.19466 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.029872 B = 0.002297 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.115796 B =12187.153131 C =12569.793673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 H 0.081 0.919 4 C 0.187 3.813 5 N -0.609 5.609 6 C -0.264 4.264 7 H 0.070 0.930 8 C -0.051 4.051 9 N -0.937 5.937 10 Si 0.970 3.030 11 H -0.277 1.277 12 H -0.297 1.297 13 H -0.273 1.273 14 C 0.142 3.858 15 C -0.120 4.120 16 C 0.171 3.829 17 H 0.044 0.956 18 N -0.705 5.705 19 C 0.489 3.511 20 O -0.583 6.583 21 C 0.115 3.885 22 N -0.595 5.595 23 C 0.105 3.895 24 C -0.144 4.144 25 C 0.521 3.479 26 O -0.543 6.543 27 N -0.677 5.677 28 C 0.711 3.289 29 O -0.595 6.595 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.033 0.967 33 H -0.016 1.016 34 H 0.062 0.938 35 H 0.250 0.750 36 H -0.001 1.001 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.416 0.584 41 H 0.124 0.876 42 H 0.173 0.827 43 H 0.150 0.850 44 H 0.065 0.935 45 H 0.148 0.852 46 H 0.146 0.854 47 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.648 9.411 25.299 27.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.126 4.126 3 H 0.099 0.901 4 C 0.061 3.939 5 N -0.332 5.332 6 C -0.394 4.394 7 H 0.088 0.912 8 C -0.246 4.246 9 N -0.583 5.583 10 Si 0.798 3.202 11 H -0.203 1.203 12 H -0.223 1.223 13 H -0.199 1.199 14 C 0.016 3.984 15 C -0.160 4.160 16 C 0.065 3.935 17 H 0.062 0.938 18 N -0.358 5.358 19 C 0.275 3.725 20 O -0.462 6.462 21 C -0.011 4.011 22 N -0.330 5.330 23 C -0.016 4.016 24 C -0.184 4.184 25 C 0.312 3.688 26 O -0.418 6.418 27 N -0.344 5.344 28 C 0.412 3.588 29 O -0.472 6.472 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.002 0.998 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.017 0.983 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.254 0.746 41 H 0.142 0.858 42 H 0.190 0.810 43 H 0.168 0.832 44 H 0.083 0.917 45 H 0.166 0.834 46 H 0.164 0.836 47 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -2.828 8.326 25.259 26.745 hybrid contribution -0.320 -0.524 -1.462 1.586 sum -3.148 7.802 23.796 25.240 Atomic orbital electron populations 1.21679 0.93983 1.01026 1.02367 1.21872 0.96132 1.00159 0.94479 0.90101 1.20597 0.82604 0.95346 0.95361 1.44367 1.02189 1.69807 1.16880 1.19502 0.98467 1.34867 0.86537 0.91239 1.25854 0.99455 1.00204 0.99126 1.70192 1.27349 1.41802 1.18954 0.85311 0.77855 0.79189 0.77893 1.20278 1.22301 1.19855 1.20993 0.96938 0.93626 0.86840 1.22144 0.95056 1.01394 0.97422 1.20560 0.93320 0.95591 0.84005 0.93791 1.45950 1.65560 1.15172 1.09096 1.21897 0.77280 0.87246 0.86027 1.90711 1.51648 1.18424 1.85448 1.21622 1.06430 0.91019 0.82079 1.46702 1.13592 1.41620 1.31042 1.22002 0.86602 1.06506 0.86509 1.22372 0.98062 0.98804 0.99113 1.21879 0.81898 0.85287 0.79774 1.90785 1.72305 1.42547 1.36135 1.44332 1.32770 1.38865 1.18429 1.15764 0.83520 0.78581 0.80915 1.90990 1.41774 1.68125 1.46315 0.90271 0.92581 0.94732 0.99790 0.92012 0.94087 0.98332 0.92233 0.90783 0.91828 0.74640 0.85780 0.80956 0.83244 0.91676 0.83425 0.83643 0.73608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 9.03 71.98 0.65 -3.30 16 2 C -0.11 -3.65 2.46 -10.72 -0.03 -3.68 16 3 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 4 C 0.19 8.95 4.58 86.36 0.40 9.34 16 5 N -0.61 -30.51 2.99 -699.09 -2.09 -32.60 16 6 C -0.26 -14.31 9.58 84.03 0.81 -13.50 16 7 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16 8 C -0.05 -2.82 4.92 84.86 0.42 -2.41 16 9 N -0.94 -55.52 11.19 21.65 0.24 -55.27 16 10 Si 0.97 44.08 29.59 68.60 2.03 46.11 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 13 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 14 C 0.14 6.06 6.52 86.36 0.56 6.62 16 15 C -0.12 -3.98 5.65 30.67 0.17 -3.81 16 16 C 0.17 5.50 1.88 45.02 0.08 5.59 16 17 H 0.04 1.77 7.58 -2.38 -0.02 1.76 16 18 N -0.71 -15.45 4.36 -442.37 -1.93 -17.38 16 19 C 0.49 11.19 7.86 87.66 0.69 11.88 16 20 O -0.58 -19.69 16.09 -3.03 -0.05 -19.74 16 21 C 0.11 1.34 5.82 85.64 0.50 1.84 16 22 N -0.59 -8.44 2.28 -845.59 -1.93 -10.37 16 23 C 0.10 0.68 6.64 86.41 0.57 1.26 16 24 C -0.14 -0.70 6.28 29.89 0.19 -0.51 16 25 C 0.52 8.15 7.76 87.71 0.68 8.84 16 26 O -0.54 -12.45 17.93 -2.88 -0.05 -12.50 16 27 N -0.68 -12.36 5.18 -441.57 -2.29 -14.65 16 28 C 0.71 15.14 8.21 179.34 1.47 16.62 16 29 O -0.59 -17.58 16.66 -3.83 -0.06 -17.65 16 30 H 0.08 1.80 7.36 -2.39 -0.02 1.78 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 33 H -0.02 -0.86 8.14 -2.38 -0.02 -0.88 16 34 H 0.06 3.31 6.06 -2.39 -0.01 3.30 16 35 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 36 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 37 H 0.06 2.44 7.93 -2.39 -0.02 2.42 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.42 5.91 8.31 -92.72 -0.77 5.14 16 41 H 0.12 1.42 7.43 -2.39 -0.02 1.40 16 42 H 0.17 0.05 7.82 -2.39 -0.02 0.03 16 43 H 0.15 -0.31 7.80 -2.38 -0.02 -0.33 16 44 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.15 0.21 8.14 -2.38 -0.02 0.19 16 46 H 0.15 -0.09 8.14 -2.39 -0.02 -0.10 16 47 H 0.42 7.69 8.86 -92.71 -0.82 6.87 16 Total: -1.00 -86.32 381.56 0.45 -85.87 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -0.58 Total: 13.41 kcal Atomic # 6 Polarization: 27.61 SS G_CDS: 7.16 Total: 34.77 kcal Atomic # 7 Polarization: -122.29 SS G_CDS: -8.00 Total: -130.28 kcal Atomic # 8 Polarization: -49.72 SS G_CDS: -0.16 Total: -49.88 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -86.32 0.45 -85.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944017079.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.843 kcal (2) G-P(sol) polarization free energy of solvation -86.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds