Wall clock time and date at job start Tue Mar 31 2020 21:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.50017 * 2 1 4 4 C 1.53193 * 109.52391 * 120.08495 * 2 1 3 5 5 N 1.46926 * 108.77153 * 174.60312 * 4 2 1 6 6 C 1.36936 * 120.62870 * 126.41210 * 5 4 2 7 7 H 1.08004 * 119.99965 * 207.66268 * 6 5 4 8 8 C 1.38810 * 120.00601 * 27.66827 * 6 5 4 9 9 N 1.31627 * 119.99703 * 17.35961 * 8 6 5 10 10 Si 1.86797 * 120.00240 * 197.36903 * 8 6 5 11 11 H 1.48498 * 109.47195 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47219 * 119.99337 * 10 8 6 13 13 H 1.48502 * 109.47064 * 239.99250 * 10 8 6 14 14 C 1.46921 * 118.73890 * 306.38065 * 5 4 2 15 15 C 1.53195 * 108.76523 * 53.62520 * 14 5 4 16 16 C 1.53042 * 109.30958 * 305.34230 * 15 14 5 17 17 H 1.08994 * 109.46316 * 301.36876 * 16 15 14 18 18 N 1.46506 * 109.46103 * 181.39619 * 16 15 14 19 19 C 1.34771 * 119.99789 * 84.97608 * 18 16 15 20 20 O 1.21288 * 120.00147 * 359.97438 * 19 18 16 21 21 C 1.50698 * 120.00010 * 180.02562 * 19 18 16 22 22 N 1.46502 * 109.47146 * 179.97438 * 21 19 18 23 23 C 1.46414 * 119.53208 * 89.99968 * 22 21 19 24 24 C 1.53038 * 109.51630 * 144.12271 * 23 22 21 25 25 C 1.50804 * 109.18772 * 46.69100 * 24 23 22 26 26 O 1.21237 * 120.02092 * 145.74418 * 25 24 23 27 27 N 1.34564 * 119.96560 * 325.76984 * 25 24 23 28 28 C 1.34288 * 119.53394 * 269.71956 * 22 21 19 29 29 O 1.21533 * 119.20968 * 5.71988 * 28 22 21 30 30 H 1.08997 * 109.47143 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46337 * 300.06509 * 1 2 3 32 32 H 1.08996 * 109.46950 * 60.06329 * 1 2 3 33 33 H 1.08999 * 109.58177 * 294.38604 * 4 2 1 34 34 H 1.08997 * 109.58658 * 54.81040 * 4 2 1 35 35 H 0.97001 * 119.99754 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.58984 * 173.40044 * 14 5 4 37 37 H 1.08994 * 109.59151 * 293.68630 * 14 5 4 38 38 H 1.08995 * 109.49115 * 185.39722 * 15 14 5 39 39 H 1.08996 * 109.51050 * 65.29705 * 15 14 5 40 40 H 0.96998 * 119.99938 * 264.97153 * 18 16 15 41 41 H 1.08999 * 109.47143 * 59.99147 * 21 19 18 42 42 H 1.09001 * 109.46780 * 299.99479 * 21 19 18 43 43 H 1.09002 * 109.46243 * 264.12992 * 23 22 21 44 44 H 1.08990 * 109.46712 * 24.10788 * 23 22 21 45 45 H 1.08997 * 109.52031 * 166.60294 * 24 23 22 46 46 H 1.08999 * 109.52231 * 286.77992 * 24 23 22 47 47 H 0.96998 * 119.50501 * 184.45790 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0420 -0.7238 1.2493 5 7 3.5054 -0.8284 1.1688 6 6 4.2944 -0.3783 2.1936 7 1 5.2996 -0.0385 1.9920 8 6 3.8025 -0.3588 3.4914 9 7 2.7392 -1.0695 3.8029 10 14 4.6492 0.6761 4.7958 11 1 5.8133 1.3750 4.1945 12 1 3.6924 1.6777 5.3311 13 1 5.1153 -0.2021 5.8989 14 6 4.1059 -1.4256 -0.0316 15 6 3.5709 -0.6938 -1.2665 16 6 2.0408 -0.7228 -1.2486 17 1 1.6974 -1.7571 -1.2355 18 7 1.5259 -0.0528 -2.4454 19 6 1.3972 -0.7381 -3.5986 20 8 1.7082 -1.9095 -3.6459 21 6 0.8680 -0.0488 -4.8298 22 7 0.8249 -1.0012 -5.9422 23 6 -0.3833 -1.7981 -6.1636 24 6 -0.6044 -1.9847 -7.6664 25 6 0.6967 -2.3902 -8.3122 26 8 0.6943 -3.1529 -9.2546 27 7 1.8604 -1.9055 -7.8416 28 6 1.8919 -1.1268 -6.7479 29 8 2.9128 -0.5250 -6.4782 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5149 0.8895 32 1 -0.3633 0.5128 -0.8905 33 1 1.7645 -0.1581 2.1387 34 1 1.6064 -1.7217 1.2978 35 1 2.3953 -1.0556 4.7098 36 1 5.1903 -1.3231 0.0125 37 1 3.8407 -2.4814 -0.0863 38 1 3.9336 -1.1880 -2.1678 39 1 3.9152 0.3403 -1.2545 40 1 1.2775 0.8841 -2.4076 41 1 1.5221 0.7835 -5.0896 42 1 -0.1364 0.3261 -4.6329 43 1 -0.2672 -2.7728 -5.6898 44 1 -1.2417 -1.2841 -5.7313 45 1 -1.3504 -2.7622 -7.8309 46 1 -0.9510 -1.0480 -8.1027 47 1 2.6875 -2.1185 -8.3014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944017081.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:44 Heat of formation + Delta-G solvation = -72.323153 kcal Electronic energy + Delta-G solvation = -30217.309625 eV Core-core repulsion = 26014.982335 eV Total energy + Delta-G solvation = -4202.327291 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.00605 -39.95087 -39.11129 -37.68342 -36.47893 -34.96978 -34.50951 -32.47957 -31.90750 -31.81978 -29.64779 -27.91258 -25.95678 -25.47631 -24.93553 -23.42337 -22.26514 -20.90637 -20.51656 -19.67844 -19.09967 -18.67143 -18.06856 -17.47256 -16.81802 -16.56545 -16.20028 -15.52577 -15.18821 -14.99229 -14.89733 -14.78975 -14.64929 -13.97042 -13.82433 -13.70711 -13.49545 -13.19259 -13.05408 -12.89779 -12.60930 -12.40825 -12.14937 -11.95938 -11.48147 -11.33350 -11.10261 -11.05151 -10.75527 -10.68370 -10.62931 -10.55142 -10.36897 -10.25081 -10.12152 -10.01125 -9.77084 -9.56981 -9.09468 -8.73051 -8.47390 -6.70414 -5.81346 -3.22905 1.36370 1.89839 2.60839 2.70249 2.85080 3.34086 3.37430 3.43892 3.46249 3.89702 4.04735 4.41219 4.48011 4.48675 4.71710 4.80449 4.88708 5.01729 5.21068 5.24897 5.30184 5.44062 5.54581 5.58618 5.64654 5.72442 5.86114 6.04844 6.06488 6.10638 6.22172 6.32968 6.43198 6.49909 6.58692 6.65647 6.79768 6.92080 6.97059 6.99008 7.12789 7.30915 7.56502 7.66872 7.78880 7.81243 8.32433 8.42711 9.19140 9.82286 10.39083 11.27458 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.029432 B = 0.002308 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.117279 B =12130.388688 C =12529.384436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 H 0.068 0.932 4 C 0.181 3.819 5 N -0.593 5.593 6 C -0.250 4.250 7 H 0.066 0.934 8 C 0.001 3.999 9 N -0.903 5.903 10 Si 0.901 3.099 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.290 1.290 14 C 0.147 3.853 15 C -0.140 4.140 16 C 0.159 3.841 17 H 0.081 0.919 18 N -0.719 5.719 19 C 0.493 3.507 20 O -0.532 6.532 21 C 0.109 3.891 22 N -0.599 5.599 23 C 0.109 3.891 24 C -0.157 4.157 25 C 0.524 3.476 26 O -0.505 6.505 27 N -0.674 5.674 28 C 0.715 3.285 29 O -0.549 6.549 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.092 0.908 34 H 0.020 0.980 35 H 0.253 0.747 36 H 0.056 0.944 37 H 0.020 0.980 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.396 0.604 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.127 0.873 46 H 0.115 0.885 47 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.886 3.797 -20.811 24.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.143 4.143 3 H 0.086 0.914 4 C 0.054 3.946 5 N -0.315 5.315 6 C -0.380 4.380 7 H 0.084 0.916 8 C -0.197 4.197 9 N -0.548 5.548 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.217 1.217 14 C 0.020 3.980 15 C -0.180 4.180 16 C 0.055 3.945 17 H 0.099 0.901 18 N -0.370 5.370 19 C 0.277 3.723 20 O -0.408 6.408 21 C -0.018 4.018 22 N -0.335 5.335 23 C -0.013 4.013 24 C -0.197 4.197 25 C 0.312 3.688 26 O -0.377 6.377 27 N -0.343 5.343 28 C 0.416 3.584 29 O -0.422 6.422 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.110 0.890 34 H 0.038 0.962 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.229 0.771 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.101 0.899 44 H 0.122 0.878 45 H 0.145 0.855 46 H 0.133 0.867 47 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -11.343 2.870 -20.931 23.980 hybrid contribution 0.606 0.816 0.589 1.175 sum -10.737 3.686 -20.343 23.296 Atomic orbital electron populations 1.21718 0.95918 1.01377 1.00553 1.22173 0.94650 1.00672 0.96830 0.91388 1.20806 0.83085 0.97054 0.93654 1.44115 1.01741 1.69394 1.16296 1.19239 0.97770 1.35175 0.85809 0.91581 1.25040 0.98585 0.99131 0.96971 1.70043 1.25720 1.40273 1.18726 0.86233 0.78908 0.80001 0.81715 1.20260 1.21567 1.21739 1.20876 0.96721 0.94240 0.86132 1.22375 0.94807 1.01369 0.99445 1.21055 0.93858 0.97054 0.82484 0.90125 1.46264 1.65879 1.14314 1.10510 1.20941 0.78841 0.87780 0.84770 1.90717 1.49422 1.16283 1.84400 1.21380 1.04229 0.91766 0.84387 1.46495 1.14506 1.43382 1.29120 1.21699 0.87519 0.97727 0.94398 1.22272 0.95382 1.06215 0.95845 1.20980 0.86011 0.78828 0.82998 1.90801 1.87378 1.32224 1.27331 1.44234 1.12337 1.49615 1.28090 1.15491 0.83782 0.79634 0.79501 1.91028 1.29788 1.47953 1.73448 0.93080 0.92619 0.93904 0.88964 0.96196 0.93675 0.92585 0.96257 0.92679 0.92279 0.77063 0.86463 0.86846 0.89860 0.87812 0.85458 0.86728 0.73187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.03 37.16 0.34 -1.59 16 2 C -0.12 -2.10 2.46 -90.49 -0.22 -2.32 16 3 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.18 4.11 4.59 -3.71 -0.02 4.09 16 5 N -0.59 -14.65 2.99 -172.32 -0.52 -15.16 16 6 C -0.25 -6.79 9.58 -15.06 -0.14 -6.93 16 7 H 0.07 1.78 7.89 -52.48 -0.41 1.36 16 8 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 9 N -0.90 -25.73 11.19 55.49 0.62 -25.11 16 10 Si 0.90 21.39 29.59 -169.99 -5.03 16.36 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 C 0.15 3.19 6.52 -3.71 -0.02 3.16 16 15 C -0.14 -2.57 5.65 -26.61 -0.15 -2.72 16 16 C 0.16 2.62 1.88 -67.88 -0.13 2.50 16 17 H 0.08 1.53 7.58 -51.93 -0.39 1.13 16 18 N -0.72 -8.90 4.36 -53.76 -0.23 -9.13 16 19 C 0.49 6.26 7.86 -10.99 -0.09 6.18 16 20 O -0.53 -9.17 16.09 5.55 0.09 -9.08 16 21 C 0.11 0.87 5.82 -5.19 -0.03 0.84 16 22 N -0.60 -5.17 2.28 -181.17 -0.41 -5.58 16 23 C 0.11 0.57 6.64 -4.07 -0.03 0.55 16 24 C -0.16 -0.67 6.28 -27.81 -0.17 -0.84 16 25 C 0.52 4.44 7.76 -11.03 -0.09 4.35 16 26 O -0.50 -5.89 17.93 5.59 0.10 -5.79 16 27 N -0.67 -6.28 5.18 -16.03 -0.08 -6.36 16 28 C 0.71 8.01 8.21 -87.79 -0.72 7.29 16 29 O -0.55 -8.19 16.65 5.34 0.09 -8.10 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.47 7.36 -51.93 -0.38 0.09 16 33 H 0.09 2.35 6.04 -51.93 -0.31 2.03 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.06 1.20 7.93 -51.92 -0.41 0.78 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.40 3.70 8.31 -40.82 -0.34 3.36 16 41 H 0.12 0.92 7.43 -51.93 -0.39 0.54 16 42 H 0.11 0.41 7.82 -51.93 -0.41 0.01 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.10 0.22 7.79 -51.93 -0.40 -0.18 16 45 H 0.13 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.43 3.70 8.86 -40.82 -0.36 3.34 16 LS Contribution 381.51 15.07 5.75 5.75 Total: -1.00 -36.68 381.51 -8.36 -45.04 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.17 Total: 2.69 kcal Atomic # 6 Polarization: 16.05 SS G_CDS: -1.56 Total: 14.49 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: -0.63 Total: -61.35 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: 0.28 Total: -22.98 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.68 -8.36 -45.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944017081.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.282 kcal (2) G-P(sol) polarization free energy of solvation -36.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds