Wall clock time and date at job start Tue Mar 31 2020 21:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.52063 * 2 1 4 4 C 1.53163 * 109.47834 * 239.92594 * 2 1 3 5 5 N 1.46922 * 108.76710 * 185.40558 * 4 2 1 6 6 C 1.36944 * 120.63188 * 233.58628 * 5 4 2 7 7 H 1.07997 * 119.99848 * 152.63968 * 6 5 4 8 8 C 1.38813 * 119.99821 * 332.63851 * 6 5 4 9 9 N 1.31617 * 119.99726 * 159.34734 * 8 6 5 10 10 Si 1.86803 * 120.00020 * 339.34834 * 8 6 5 11 11 H 1.48494 * 109.47128 * 92.91939 * 10 8 6 12 12 H 1.48499 * 109.47043 * 212.92009 * 10 8 6 13 13 H 1.48498 * 109.46980 * 332.91778 * 10 8 6 14 14 C 1.46929 * 118.74241 * 53.60905 * 5 4 2 15 15 C 1.53190 * 108.77208 * 306.39452 * 14 5 4 16 16 C 1.53037 * 109.49599 * 120.08021 * 2 1 3 17 17 H 1.08998 * 109.46295 * 301.32701 * 16 2 1 18 18 N 1.46502 * 109.46227 * 61.29943 * 16 2 1 19 19 C 1.34772 * 120.00063 * 205.02692 * 18 16 2 20 20 O 1.21284 * 120.00159 * 359.97438 * 19 18 16 21 21 C 1.50700 * 120.00127 * 179.97438 * 19 18 16 22 22 N 1.46502 * 109.47153 * 180.02562 * 21 19 18 23 23 C 1.47313 * 126.69059 * 90.00374 * 22 21 19 24 24 C 1.51583 * 103.58982 * 179.97438 * 23 22 21 25 25 O 1.21239 * 127.15379 * 180.02562 * 24 23 22 26 26 N 1.34768 * 105.68664 * 359.97438 * 24 23 22 27 27 C 1.46501 * 124.17583 * 179.97438 * 26 24 23 28 28 C 1.33787 * 111.64377 * 359.76977 * 26 24 23 29 29 O 1.21540 * 123.76882 * 180.24966 * 28 26 24 30 30 H 1.08997 * 109.47178 * 299.91720 * 1 2 3 31 31 H 1.09001 * 109.47165 * 59.92382 * 1 2 3 32 32 H 1.09000 * 109.46904 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.59043 * 65.62120 * 4 2 1 34 34 H 1.09003 * 109.59498 * 305.19270 * 4 2 1 35 35 H 0.97003 * 119.99690 * 179.97438 * 9 8 6 36 36 H 1.08992 * 109.58955 * 186.60384 * 14 5 4 37 37 H 1.09006 * 109.70336 * 66.24570 * 14 5 4 38 38 H 1.08997 * 109.50052 * 294.68025 * 15 14 5 39 39 H 1.09003 * 109.52390 * 174.59774 * 15 14 5 40 40 H 0.97003 * 119.99672 * 25.01809 * 18 16 2 41 41 H 1.09002 * 109.47150 * 60.00001 * 21 19 18 42 42 H 1.08998 * 109.47074 * 299.99916 * 21 19 18 43 43 H 1.09002 * 110.59548 * 298.48365 * 23 22 21 44 44 H 1.08998 * 110.60009 * 61.27854 * 23 22 21 45 45 H 1.09001 * 109.46919 * 0.02562 * 27 26 24 46 46 H 1.08999 * 109.47459 * 120.02672 * 27 26 24 47 47 H 1.09006 * 109.46877 * 240.02726 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0408 -0.7236 -1.2496 5 7 3.5040 -0.8289 -1.1699 6 6 4.2928 -0.3790 -2.1950 7 1 5.2999 -0.0444 -1.9946 8 6 3.7979 -0.3531 -3.4916 9 7 4.3562 0.4259 -4.3936 10 14 2.3395 -1.4239 -3.9563 11 1 1.0838 -0.6483 -3.7926 12 1 2.4735 -1.8562 -5.3706 13 1 2.3019 -2.6186 -3.0750 14 6 4.1051 -1.4265 0.0302 15 6 3.5709 -0.6950 1.2656 16 6 2.0408 -0.7231 1.2483 17 1 1.6583 -0.2244 2.1389 18 7 1.5784 -2.1131 1.2308 19 6 1.4497 -2.7951 2.3861 20 8 1.7172 -2.2583 3.4402 21 6 0.9735 -4.2248 2.3681 22 7 0.9183 -4.7384 3.7390 23 6 -0.2323 -4.6760 4.6567 24 6 0.2776 -5.3522 5.9139 25 8 -0.3313 -5.5329 6.9466 26 7 1.5482 -5.7117 5.6445 27 6 2.4269 -6.4015 6.5923 28 6 1.9065 -5.3647 4.4031 29 8 3.0035 -5.5873 3.9294 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7630 -0.1577 -2.1388 34 1 1.6047 -1.7214 -1.2981 35 1 4.0106 0.4437 -5.2998 36 1 5.1893 -1.3244 -0.0145 37 1 3.8395 -2.4822 0.0875 38 1 3.9159 0.3389 1.2537 39 1 3.9336 -1.1892 2.1669 40 1 1.3647 -2.5425 0.3877 41 1 1.6635 -4.8302 1.7804 42 1 -0.0203 -4.2711 1.9229 43 1 -0.5036 -3.6403 4.8617 44 1 -1.0822 -5.2193 4.2437 45 1 1.8920 -6.5702 7.5269 46 1 2.7346 -7.3589 6.1719 47 1 3.3078 -5.7886 6.7833 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944134336.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:59 Heat of formation + Delta-G solvation = -64.295547 kcal Electronic energy + Delta-G solvation = -30733.216345 eV Core-core repulsion = 26531.237157 eV Total energy + Delta-G solvation = -4201.979188 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.36025 -41.27570 -39.81100 -39.24290 -37.27669 -36.26495 -35.91037 -33.93410 -33.62546 -32.24568 -30.99109 -28.16128 -27.88819 -27.51063 -26.74549 -24.31036 -23.61530 -22.55145 -22.19323 -21.17441 -20.34640 -18.99908 -18.74868 -18.50849 -17.84566 -17.73684 -17.22470 -16.87752 -16.68541 -16.14472 -15.90369 -15.76730 -15.48865 -15.27836 -15.19322 -15.00068 -14.95144 -14.75408 -14.45602 -14.30081 -13.85621 -13.69109 -13.54715 -13.53092 -13.19110 -12.99913 -12.95541 -12.58857 -12.26826 -12.09839 -12.07023 -11.92783 -11.59767 -11.50901 -11.40545 -11.28254 -11.22260 -10.93130 -10.62199 -10.04070 -9.97535 -8.90685 -8.13393 -5.46760 0.54675 0.95561 1.33524 1.46529 1.56052 1.62888 1.81213 1.92041 2.38730 2.45693 3.01895 3.07358 3.34195 3.67183 3.68245 3.81700 3.97080 4.06534 4.18226 4.25602 4.27031 4.35861 4.38392 4.38870 4.42504 4.48583 4.54295 4.63039 4.68897 4.70785 4.81944 4.88827 4.90646 5.01323 5.04103 5.14952 5.22490 5.26943 5.31315 5.42086 5.60312 5.88694 5.99553 6.14549 6.27725 6.57105 6.93394 6.93586 7.25716 7.63910 8.02718 9.06658 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021278 B = 0.002823 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.619757 B = 9916.037337 C =10181.493086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 H 0.070 0.930 4 C 0.127 3.873 5 N -0.616 5.616 6 C -0.253 4.253 7 H 0.041 0.959 8 C -0.041 4.041 9 N -0.961 5.961 10 Si 0.953 3.047 11 H -0.266 1.266 12 H -0.317 1.317 13 H -0.247 1.247 14 C 0.153 3.847 15 C -0.138 4.138 16 C 0.172 3.828 17 H 0.083 0.917 18 N -0.706 5.706 19 C 0.493 3.507 20 O -0.575 6.575 21 C 0.133 3.867 22 N -0.605 5.605 23 C 0.072 3.928 24 C 0.525 3.475 25 O -0.500 6.500 26 N -0.584 5.584 27 C 0.083 3.917 28 C 0.697 3.303 29 O -0.580 6.580 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.261 0.739 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.410 0.590 41 H 0.126 0.874 42 H 0.175 0.825 43 H 0.136 0.864 44 H 0.170 0.830 45 H 0.105 0.895 46 H 0.087 0.913 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.181 -13.052 17.771 27.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 H 0.088 0.912 4 C 0.003 3.997 5 N -0.341 5.341 6 C -0.382 4.382 7 H 0.059 0.941 8 C -0.235 4.235 9 N -0.607 5.607 10 Si 0.780 3.220 11 H -0.192 1.192 12 H -0.247 1.247 13 H -0.171 1.171 14 C 0.028 3.972 15 C -0.178 4.178 16 C 0.067 3.933 17 H 0.101 0.899 18 N -0.359 5.359 19 C 0.279 3.721 20 O -0.454 6.454 21 C 0.008 3.992 22 N -0.341 5.341 23 C -0.052 4.052 24 C 0.315 3.685 25 O -0.372 6.372 26 N -0.329 5.329 27 C -0.058 4.058 28 C 0.399 3.601 29 O -0.456 6.456 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.247 0.753 41 H 0.143 0.857 42 H 0.192 0.808 43 H 0.154 0.846 44 H 0.188 0.812 45 H 0.124 0.876 46 H 0.105 0.895 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.662 -12.843 18.628 27.518 hybrid contribution 0.500 -0.012 -1.031 1.146 sum -15.163 -12.855 17.596 26.548 Atomic orbital electron populations 1.21742 0.92422 1.03085 1.02259 1.21803 0.97339 0.99658 0.94215 0.91196 1.21487 0.83153 0.97994 0.97113 1.44419 1.01682 1.70664 1.17290 1.18807 0.97592 1.35075 0.86748 0.94071 1.26028 1.02071 0.99940 0.95449 1.70001 1.46160 1.40014 1.04553 0.85823 0.79534 0.80857 0.75756 1.19216 1.24690 1.17088 1.20909 0.96260 0.94854 0.85219 1.22244 0.96713 1.00998 0.97831 1.20641 0.92653 0.81960 0.98041 0.89875 1.46023 1.66992 1.13570 1.09346 1.21675 0.77206 0.89754 0.83482 1.90701 1.51645 1.71025 1.32070 1.21456 1.08061 0.89750 0.79887 1.47091 1.13390 1.58780 1.14871 1.22781 0.91075 1.05497 0.85878 1.21264 0.80771 0.76825 0.89640 1.90811 1.62165 1.55033 1.29226 1.46376 1.16255 1.55464 1.14799 1.21975 0.93933 0.97677 0.92174 1.16033 0.84355 0.78757 0.80950 1.90977 1.22409 1.61213 1.70985 0.91399 0.92667 0.90827 0.92972 0.93596 0.93023 0.93938 0.94471 0.92147 0.92248 0.75292 0.85665 0.80809 0.84635 0.81247 0.87621 0.89478 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.05 71.98 0.65 -2.20 16 2 C -0.11 -3.13 2.67 -10.73 -0.03 -3.16 16 3 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 4 C 0.13 4.60 3.19 86.35 0.28 4.88 16 5 N -0.62 -27.12 2.77 -699.15 -1.94 -29.06 16 6 C -0.25 -14.03 10.04 84.03 0.84 -13.19 16 7 H 0.04 2.58 8.06 -2.91 -0.02 2.55 16 8 C -0.04 -2.30 5.23 84.86 0.44 -1.86 16 9 N -0.96 -59.68 13.97 21.65 0.30 -59.37 16 10 Si 0.95 43.11 24.35 68.60 1.67 44.78 16 11 H -0.27 -11.00 6.62 99.48 0.66 -10.35 16 12 H -0.32 -15.05 7.11 99.48 0.71 -14.34 16 13 H -0.25 -10.08 6.64 99.48 0.66 -9.42 16 14 C 0.15 5.79 6.26 86.36 0.54 6.33 16 15 C -0.14 -4.50 5.77 30.67 0.18 -4.32 16 16 C 0.17 4.65 2.21 45.02 0.10 4.75 16 17 H 0.08 2.27 7.58 -2.39 -0.02 2.25 16 18 N -0.71 -15.08 3.60 -442.40 -1.59 -16.67 16 19 C 0.49 10.41 7.86 87.66 0.69 11.10 16 20 O -0.58 -17.02 16.09 -3.04 -0.05 -17.07 16 21 C 0.13 1.65 6.63 85.63 0.57 2.21 16 22 N -0.60 -9.46 2.51 -846.23 -2.12 -11.58 16 23 C 0.07 0.69 7.66 85.76 0.66 1.34 16 24 C 0.53 8.65 8.32 87.94 0.73 9.38 16 25 O -0.50 -10.61 17.51 -2.90 -0.05 -10.66 16 26 N -0.58 -11.03 3.00 -796.64 -2.39 -13.43 16 27 C 0.08 1.23 10.76 127.77 1.37 2.61 16 28 C 0.70 15.88 8.31 179.44 1.49 17.37 16 29 O -0.58 -17.98 17.34 -3.84 -0.07 -18.05 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.21 7.53 -2.39 -0.02 1.19 16 33 H 0.05 2.17 4.50 -2.39 -0.01 2.16 16 34 H 0.05 1.45 5.57 -2.39 -0.01 1.43 16 35 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 36 H 0.04 1.74 7.93 -2.39 -0.02 1.73 16 37 H 0.04 1.31 7.74 -2.38 -0.02 1.29 16 38 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.41 7.47 6.73 -92.71 -0.62 6.84 16 41 H 0.13 1.60 8.03 -2.39 -0.02 1.58 16 42 H 0.17 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.17 0.16 8.14 -2.39 -0.02 0.14 16 45 H 0.11 1.27 7.64 -2.39 -0.02 1.26 16 46 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -83.24 376.49 2.56 -80.68 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.28 Total: 15.18 kcal Atomic # 6 Polarization: 26.73 SS G_CDS: 8.51 Total: 35.25 kcal Atomic # 7 Polarization: -122.37 SS G_CDS: -7.74 Total: -130.11 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: -0.17 Total: -45.78 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.67 Total: 44.78 kcal Total: -83.24 2.56 -80.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944134336.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.386 kcal (2) G-P(sol) polarization free energy of solvation -83.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds