Wall clock time and date at job start Tue Mar 31 2020 21:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.49389 * 2 1 4 4 C 1.53188 * 109.49730 * 120.06295 * 2 1 3 5 5 N 1.46928 * 108.77402 * 174.61929 * 4 2 1 6 6 C 1.36940 * 120.63147 * 126.41571 * 5 4 2 7 7 H 1.07997 * 119.99655 * 331.81282 * 6 5 4 8 8 C 1.38813 * 120.00064 * 151.81129 * 6 5 4 9 9 N 1.31615 * 119.99942 * 343.07905 * 8 6 5 10 10 Si 1.86799 * 119.99873 * 163.08163 * 8 6 5 11 11 H 1.48499 * 109.47424 * 89.99675 * 10 8 6 12 12 H 1.48499 * 109.47268 * 210.00046 * 10 8 6 13 13 H 1.48506 * 109.47070 * 329.99895 * 10 8 6 14 14 C 1.46926 * 118.74134 * 306.39428 * 5 4 2 15 15 C 1.53195 * 108.77175 * 53.60495 * 14 5 4 16 16 C 1.53033 * 109.31716 * 305.36497 * 15 14 5 17 17 H 1.08995 * 109.46276 * 181.38513 * 16 15 14 18 18 N 1.46501 * 109.45154 * 301.35587 * 16 15 14 19 19 C 1.34773 * 119.99778 * 275.06096 * 18 16 15 20 20 O 1.21283 * 120.00050 * 359.97438 * 19 18 16 21 21 C 1.50702 * 119.99895 * 179.97438 * 19 18 16 22 22 N 1.46506 * 109.47154 * 179.97438 * 21 19 18 23 23 C 1.47304 * 126.68851 * 269.71060 * 22 21 19 24 24 C 1.51584 * 103.59206 * 179.97438 * 23 22 21 25 25 O 1.21232 * 127.16181 * 180.08393 * 24 23 22 26 26 N 1.34772 * 105.68575 * 0.33267 * 24 23 22 27 27 C 1.46500 * 124.18007 * 179.82082 * 26 24 23 28 28 C 1.33794 * 111.63892 * 359.78070 * 26 24 23 29 29 O 1.21541 * 123.76629 * 179.97438 * 28 26 24 30 30 H 1.09006 * 109.47346 * 299.93025 * 1 2 3 31 31 H 1.08994 * 109.47663 * 59.93455 * 1 2 3 32 32 H 1.09005 * 109.46891 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.58451 * 54.83491 * 4 2 1 34 34 H 1.09004 * 109.71009 * 294.47770 * 4 2 1 35 35 H 0.96999 * 119.99981 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.58917 * 173.39402 * 14 5 4 37 37 H 1.08998 * 109.58284 * 293.82323 * 14 5 4 38 38 H 1.09001 * 109.49730 * 65.31939 * 15 14 5 39 39 H 1.09001 * 109.49435 * 185.41504 * 15 14 5 40 40 H 0.97005 * 119.99952 * 95.05539 * 18 16 15 41 41 H 1.08998 * 109.47370 * 299.99507 * 21 19 18 42 42 H 1.08995 * 109.47362 * 59.99960 * 21 19 18 43 43 H 1.09003 * 110.60354 * 298.55954 * 23 22 21 44 44 H 1.09001 * 110.60133 * 61.51303 * 23 22 21 45 45 H 1.09004 * 109.46620 * 269.95722 * 27 26 24 46 46 H 1.09003 * 109.47093 * 29.95567 * 27 26 24 47 47 H 1.08995 * 109.46980 * 149.96003 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 1.2498 5 7 3.5047 -0.8280 1.1702 6 6 4.2932 -0.3777 2.1952 7 1 3.9492 0.4274 2.8275 8 6 5.5346 -0.9561 2.4216 9 7 5.8211 -2.1272 1.8935 10 14 6.7985 -0.0724 3.4757 11 1 6.6286 -0.4756 4.8947 12 1 8.1643 -0.4340 3.0184 13 1 6.6073 1.3951 3.3518 14 6 4.1060 -1.4254 -0.0300 15 6 3.5715 -0.6940 -1.2654 16 6 2.0415 -0.7229 -1.2482 17 1 1.6588 -0.2246 -2.1388 18 7 1.5799 -2.1132 -1.2304 19 6 1.4525 -2.7956 -2.3856 20 8 1.7194 -2.2587 -3.4398 21 6 0.9782 -4.2260 -2.3673 22 7 0.9241 -4.7401 -3.7382 23 6 -0.2283 -4.6847 -4.6540 24 6 0.2841 -5.3567 -5.9124 25 8 -0.3245 -5.5392 -6.9449 26 7 1.5553 -5.7142 -5.6428 27 6 2.4349 -6.4037 -6.5899 28 6 1.9149 -5.3608 -4.4035 29 8 3.0138 -5.5770 -3.9314 30 1 -0.3634 0.5128 0.8906 31 1 -0.3634 0.5148 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6057 -1.7214 1.2982 34 1 1.7632 -0.1598 2.1404 35 1 6.6887 -2.5312 2.0514 36 1 5.1902 -1.3227 0.0148 37 1 3.8388 -2.4806 -0.0859 38 1 3.9160 0.3400 -1.2535 39 1 3.9345 -1.1886 -2.1663 40 1 1.3661 -2.5425 -0.3873 41 1 1.6690 -4.8303 -1.7794 42 1 -0.0156 -4.2736 -1.9223 43 1 -1.0734 -5.2356 -4.2409 44 1 -0.5063 -3.6508 -4.8586 45 1 2.3235 -7.4814 -6.4707 46 1 2.1657 -6.1210 -7.6077 47 1 3.4697 -6.1217 -6.3961 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944134338.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:09 Heat of formation + Delta-G solvation = -43.402736 kcal Electronic energy + Delta-G solvation = -30639.322637 eV Core-core repulsion = 26438.249430 eV Total energy + Delta-G solvation = -4201.073207 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.48922 -39.94368 -38.80136 -37.73821 -36.26425 -35.32701 -34.27909 -32.63820 -31.25924 -30.73412 -29.74014 -27.39516 -26.85130 -25.84949 -25.10768 -22.87646 -22.14636 -21.23560 -20.98994 -20.18513 -18.64701 -17.91836 -17.67312 -16.96017 -16.82865 -16.65608 -15.88710 -15.61413 -15.01471 -14.80333 -14.71083 -14.39512 -14.34311 -14.23215 -13.99297 -13.81098 -13.54048 -13.27572 -13.04986 -12.95726 -12.83777 -12.60703 -12.31202 -12.05868 -11.52399 -11.40319 -11.11880 -11.10226 -10.85768 -10.70568 -10.46798 -10.39214 -10.25851 -10.13524 -10.07300 -10.02356 -9.76845 -9.46408 -9.06564 -8.66636 -8.48170 -6.70333 -5.81561 -3.25144 1.39131 1.77946 2.61856 2.74530 2.82508 3.35554 3.43462 3.45168 3.48378 3.77570 4.40255 4.46559 4.67554 4.80567 4.87489 4.94625 5.05114 5.08741 5.13941 5.27450 5.27787 5.33101 5.37673 5.44837 5.56011 5.60349 5.83699 5.91489 6.03663 6.07777 6.11212 6.22641 6.30690 6.39918 6.60207 6.63119 6.72841 6.85417 6.87348 6.94338 7.08789 7.35051 7.65671 7.71955 7.77150 7.90085 8.38639 8.41671 9.17708 9.80986 10.36698 11.26326 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017425 B = 0.002874 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.513669 B = 9739.887142 C =10865.776802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 H 0.081 0.919 4 C 0.152 3.848 5 N -0.591 5.591 6 C -0.256 4.256 7 H 0.065 0.935 8 C 0.005 3.995 9 N -0.899 5.899 10 Si 0.901 3.099 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.280 1.280 14 C 0.175 3.825 15 C -0.155 4.155 16 C 0.163 3.837 17 H 0.072 0.928 18 N -0.707 5.707 19 C 0.492 3.508 20 O -0.539 6.539 21 C 0.132 3.868 22 N -0.608 5.608 23 C 0.066 3.934 24 C 0.526 3.474 25 O -0.476 6.476 26 N -0.579 5.579 27 C 0.089 3.911 28 C 0.704 3.296 29 O -0.531 6.531 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.013 0.987 34 H 0.056 0.944 35 H 0.254 0.746 36 H 0.085 0.915 37 H 0.019 0.981 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.402 0.598 41 H 0.123 0.877 42 H 0.117 0.883 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.809 -5.859 -11.050 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.140 4.140 3 H 0.100 0.900 4 C 0.026 3.974 5 N -0.314 5.314 6 C -0.386 4.386 7 H 0.082 0.918 8 C -0.194 4.194 9 N -0.543 5.543 10 Si 0.731 3.269 11 H -0.214 1.214 12 H -0.216 1.216 13 H -0.205 1.205 14 C 0.050 3.950 15 C -0.195 4.195 16 C 0.058 3.942 17 H 0.090 0.910 18 N -0.359 5.359 19 C 0.276 3.724 20 O -0.417 6.417 21 C 0.007 3.993 22 N -0.346 5.346 23 C -0.060 4.060 24 C 0.314 3.686 25 O -0.347 6.347 26 N -0.325 5.325 27 C -0.052 4.052 28 C 0.406 3.594 29 O -0.403 6.403 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.031 0.969 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.037 0.963 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.238 0.762 41 H 0.141 0.859 42 H 0.135 0.865 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.091 0.909 46 H 0.105 0.895 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.100 -5.781 -12.003 19.398 hybrid contribution 0.715 0.258 0.931 1.202 sum -13.384 -5.524 -11.072 18.227 Atomic orbital electron populations 1.21757 0.95756 1.01239 1.01086 1.21957 0.94524 1.00791 0.96738 0.90049 1.20898 0.86172 0.96049 0.94328 1.44068 0.99112 1.71601 1.16582 1.19131 0.98643 1.12057 1.08769 0.91762 1.25042 0.99907 0.95332 0.99153 1.70022 1.22179 1.14451 1.47658 0.86331 0.81182 0.79435 0.79993 1.21408 1.21564 1.20507 1.20708 0.99283 0.92928 0.82115 1.22564 0.94206 1.01894 1.00813 1.20885 0.95130 0.80301 0.97835 0.91006 1.46073 1.66860 1.14438 1.08524 1.20942 0.78466 0.88448 0.84556 1.90692 1.50281 1.69857 1.30821 1.21195 1.04943 0.93139 0.80063 1.46920 1.13001 1.60322 1.14350 1.22509 0.91146 1.04578 0.87781 1.20845 0.81330 0.77280 0.89136 1.90808 1.61897 1.53909 1.28079 1.46235 1.15454 1.55523 1.15279 1.21830 0.94700 0.96950 0.91748 1.15775 0.84525 0.78624 0.80512 1.91033 1.20299 1.59155 1.69805 0.92750 0.93356 0.93088 0.96922 0.92513 0.93580 0.89683 0.96298 0.91862 0.92762 0.76228 0.85940 0.86463 0.85840 0.85742 0.90909 0.89452 0.89075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.06 37.16 0.34 -1.32 16 2 C -0.12 -1.82 2.67 -90.50 -0.24 -2.06 16 3 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 4 C 0.15 2.81 5.50 -3.71 -0.02 2.79 16 5 N -0.59 -13.86 2.99 -172.32 -0.52 -14.38 16 6 C -0.26 -6.77 9.58 -15.06 -0.14 -6.91 16 7 H 0.06 1.67 7.88 -52.49 -0.41 1.25 16 8 C 0.00 0.13 4.92 -17.43 -0.09 0.04 16 9 N -0.90 -25.66 11.20 55.49 0.62 -25.04 16 10 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 14 C 0.18 4.06 5.05 -3.71 -0.02 4.05 16 15 C -0.15 -3.02 5.77 -26.61 -0.15 -3.18 16 16 C 0.16 2.62 2.21 -67.89 -0.15 2.47 16 17 H 0.07 1.18 7.58 -51.93 -0.39 0.79 16 18 N -0.71 -9.91 3.60 -53.77 -0.19 -10.10 16 19 C 0.49 6.90 7.86 -10.99 -0.09 6.81 16 20 O -0.54 -9.58 16.09 5.55 0.09 -9.49 16 21 C 0.13 1.31 6.63 -5.19 -0.03 1.28 16 22 N -0.61 -6.61 2.51 -181.40 -0.45 -7.06 16 23 C 0.07 0.51 7.66 -4.32 -0.03 0.48 16 24 C 0.53 5.45 8.32 -10.55 -0.09 5.36 16 25 O -0.48 -5.89 17.76 5.60 0.10 -5.79 16 26 N -0.58 -6.53 3.01 -128.16 -0.39 -6.92 16 27 C 0.09 0.78 10.73 59.85 0.64 1.42 16 28 C 0.70 9.57 8.31 -88.02 -0.73 8.84 16 29 O -0.53 -9.29 17.15 5.33 0.09 -9.19 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.54 7.54 -51.93 -0.39 0.15 16 33 H 0.01 0.23 6.64 -51.93 -0.34 -0.12 16 34 H 0.06 1.05 7.93 -51.93 -0.41 0.64 16 35 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.08 2.29 6.06 -51.93 -0.31 1.98 16 37 H 0.02 0.46 7.74 -51.93 -0.40 0.06 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.40 5.14 6.73 -40.82 -0.27 4.87 16 41 H 0.12 1.26 8.03 -51.93 -0.42 0.85 16 42 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.66 8.00 -51.93 -0.42 0.24 16 47 H 0.09 0.84 7.86 -51.93 -0.41 0.43 16 LS Contribution 383.05 15.07 5.77 5.77 Total: -1.00 -35.54 383.05 -7.84 -43.38 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -7.13 Total: 2.41 kcal Atomic # 6 Polarization: 20.88 SS G_CDS: -0.81 Total: 20.07 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: -0.93 Total: -63.50 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: 0.28 Total: -24.48 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.54 -7.84 -43.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944134338.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.018 kcal (2) G-P(sol) polarization free energy of solvation -35.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds