Wall clock time and date at job start Tue Mar 31 2020 21:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.52100 * 2 1 4 4 C 1.53190 * 109.49827 * 239.91847 * 2 1 3 5 5 N 1.46921 * 108.77699 * 185.40670 * 4 2 1 6 6 C 1.36933 * 120.63541 * 233.58568 * 5 4 2 7 7 H 1.08006 * 119.99850 * 152.60762 * 6 5 4 8 8 C 1.38814 * 120.00229 * 332.61611 * 6 5 4 9 9 N 1.31611 * 120.00350 * 159.29859 * 8 6 5 10 10 Si 1.86806 * 119.99611 * 339.29650 * 8 6 5 11 11 H 1.48501 * 109.46946 * 92.95681 * 10 8 6 12 12 H 1.48496 * 109.46962 * 212.96152 * 10 8 6 13 13 H 1.48503 * 109.47163 * 332.95915 * 10 8 6 14 14 C 1.46931 * 118.73631 * 53.61267 * 5 4 2 15 15 C 1.53196 * 108.89011 * 306.31722 * 14 5 4 16 16 C 1.53033 * 109.49788 * 120.07951 * 2 1 3 17 17 H 1.08995 * 109.46289 * 61.29890 * 16 2 1 18 18 N 1.46501 * 109.46047 * 301.32259 * 16 2 1 19 19 C 1.34781 * 119.99720 * 155.00204 * 18 16 2 20 20 O 1.21277 * 120.00019 * 0.02562 * 19 18 16 21 21 C 1.50705 * 119.99905 * 180.02562 * 19 18 16 22 22 N 1.46495 * 109.47208 * 179.97438 * 21 19 18 23 23 C 1.34768 * 124.17790 * 90.02369 * 22 21 19 24 24 O 1.21240 * 127.16003 * 359.97438 * 23 22 21 25 25 C 1.51588 * 105.68712 * 179.97438 * 23 22 21 26 26 N 1.47316 * 103.58850 * 359.97438 * 25 23 22 27 27 C 1.46501 * 126.68587 * 180.02562 * 26 25 23 28 28 C 1.33792 * 124.17731 * 269.72218 * 22 21 19 29 29 O 1.21535 * 123.76911 * 0.04259 * 28 22 21 30 30 H 1.09001 * 109.47057 * 180.08156 * 1 2 3 31 31 H 1.09000 * 109.47129 * 300.07784 * 1 2 3 32 32 H 1.08999 * 109.47508 * 60.08238 * 1 2 3 33 33 H 1.09004 * 109.58234 * 65.62091 * 4 2 1 34 34 H 1.09003 * 109.58771 * 305.20283 * 4 2 1 35 35 H 0.97002 * 120.00067 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.58809 * 66.17383 * 14 5 4 37 37 H 1.09000 * 109.58957 * 186.46227 * 14 5 4 38 38 H 1.09006 * 109.49545 * 174.65174 * 15 14 5 39 39 H 1.08998 * 109.50106 * 294.75381 * 15 14 5 40 40 H 0.96999 * 120.00320 * 334.99961 * 18 16 2 41 41 H 1.09006 * 109.47050 * 299.99831 * 21 19 18 42 42 H 1.08999 * 109.47463 * 59.99583 * 21 19 18 43 43 H 1.08998 * 110.59986 * 118.52011 * 25 23 22 44 44 H 1.08996 * 110.59366 * 241.32202 * 25 23 22 45 45 H 1.08996 * 109.47316 * 89.99751 * 27 26 25 46 46 H 1.09007 * 109.46534 * 209.99659 * 27 26 25 47 47 H 1.09000 * 109.46958 * 329.99314 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0414 -0.7238 -1.2496 5 7 3.5046 -0.8290 -1.1696 6 6 4.2935 -0.3792 -2.1945 7 1 5.3004 -0.0440 -1.9938 8 6 3.7991 -0.3539 -3.4914 9 7 4.3569 0.4257 -4.3932 10 14 2.3421 -1.4265 -3.9565 11 1 1.0855 -0.6520 -3.7942 12 1 2.4777 -1.8595 -5.3705 13 1 2.3050 -2.6207 -3.0745 14 6 4.1054 -1.4266 0.0307 15 6 3.5740 -0.6955 1.2677 16 6 2.0408 -0.7230 1.2483 17 1 1.6968 -1.7572 1.2353 18 7 1.5268 -0.0527 2.4452 19 6 1.3988 -0.7379 3.5988 20 8 1.7096 -1.9092 3.6460 21 6 0.8696 -0.0485 4.8300 22 7 0.8261 -1.0008 5.9423 23 6 1.8422 -1.2059 6.8035 24 8 2.9239 -0.6583 6.8036 25 6 1.3515 -2.2637 7.7720 26 7 -0.0124 -2.5591 7.3000 27 6 -0.9513 -3.5207 7.8832 28 6 -0.2294 -1.7701 6.2322 29 8 -1.2671 -1.7597 5.5996 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3633 0.5150 0.8893 32 1 -0.3634 0.5125 -0.8907 33 1 1.7637 -0.1579 -2.1389 34 1 1.6053 -1.7216 -1.2980 35 1 4.0116 0.4431 -5.2996 36 1 3.8377 -2.4817 0.0867 37 1 5.1898 -1.3266 -0.0150 38 1 3.9387 -1.1909 2.1676 39 1 3.9191 0.3383 1.2556 40 1 1.2786 0.8843 2.4076 41 1 1.5233 0.7843 5.0895 42 1 -0.1350 0.3260 4.6332 43 1 1.9778 -3.1541 7.7171 44 1 1.3311 -1.8725 8.7891 45 1 -1.5559 -3.0239 8.6419 46 1 -1.6009 -3.9140 7.1012 47 1 -0.3957 -4.3396 8.3400 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944790301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:15 Heat of formation + Delta-G solvation = -39.360953 kcal Electronic energy + Delta-G solvation = -30465.706765 eV Core-core repulsion = 26264.808823 eV Total energy + Delta-G solvation = -4200.897943 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.68550 -39.92694 -38.91901 -37.96043 -36.49984 -35.48062 -34.69382 -32.58166 -31.97838 -30.87255 -29.92412 -27.94739 -26.67389 -26.18662 -24.85552 -22.90407 -22.67279 -21.20095 -20.85416 -20.25612 -19.63610 -18.05263 -17.89596 -17.09912 -16.96182 -16.56700 -16.21678 -15.74882 -15.31480 -15.15519 -14.86059 -14.73102 -14.39542 -14.33535 -14.28401 -13.82810 -13.57393 -13.33604 -13.25004 -13.04167 -12.89015 -12.69790 -12.45019 -12.37646 -11.89557 -11.64760 -11.46714 -11.26539 -10.92510 -10.71456 -10.65715 -10.58851 -10.51872 -10.30415 -10.05194 -9.84307 -9.62773 -9.47404 -9.39943 -8.86005 -8.63060 -6.99665 -5.95678 -3.31489 1.31391 1.60302 2.47840 2.53745 2.65662 3.23849 3.31112 3.48914 3.52439 3.63253 4.23627 4.51790 4.52571 4.57145 4.66458 4.71524 4.81958 4.91186 4.96550 4.99845 5.09458 5.19841 5.28891 5.33718 5.44217 5.45214 5.69687 5.87802 5.89510 5.96848 6.02781 6.10960 6.12875 6.27968 6.36320 6.40004 6.60271 6.63384 6.69156 6.71260 6.71921 6.91959 6.99659 7.47695 7.71996 7.95237 8.15731 8.32333 8.93096 9.71188 10.08787 11.20240 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023606 B = 0.002647 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.846671 B =10574.279856 C =11051.275185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 H 0.079 0.921 4 C 0.135 3.865 5 N -0.606 5.606 6 C -0.259 4.259 7 H 0.086 0.914 8 C 0.024 3.976 9 N -0.908 5.908 10 Si 0.880 3.120 11 H -0.288 1.288 12 H -0.303 1.303 13 H -0.270 1.270 14 C 0.151 3.849 15 C -0.141 4.141 16 C 0.158 3.842 17 H 0.083 0.917 18 N -0.715 5.715 19 C 0.500 3.500 20 O -0.532 6.532 21 C 0.099 3.901 22 N -0.561 5.561 23 C 0.527 3.473 24 O -0.465 6.465 25 C 0.067 3.933 26 N -0.630 5.630 27 C 0.122 3.878 28 C 0.706 3.294 29 O -0.539 6.539 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.027 0.973 35 H 0.263 0.737 36 H 0.024 0.976 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.399 0.601 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.062 0.938 46 H 0.083 0.917 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.921 -2.551 27.432 29.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 H 0.097 0.903 4 C 0.009 3.991 5 N -0.329 5.329 6 C -0.387 4.387 7 H 0.104 0.896 8 C -0.175 4.175 9 N -0.551 5.551 10 Si 0.710 3.290 11 H -0.215 1.215 12 H -0.231 1.231 13 H -0.195 1.195 14 C 0.024 3.976 15 C -0.182 4.182 16 C 0.054 3.946 17 H 0.101 0.899 18 N -0.366 5.366 19 C 0.283 3.717 20 O -0.408 6.408 21 C -0.027 4.027 22 N -0.306 5.306 23 C 0.314 3.686 24 O -0.334 6.334 25 C -0.059 4.059 26 N -0.370 5.370 27 C -0.019 4.019 28 C 0.408 3.592 29 O -0.412 6.412 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.233 0.767 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.081 0.919 46 H 0.101 0.899 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.712 -3.113 26.936 29.155 hybrid contribution -0.899 -0.091 -0.447 1.009 sum -11.612 -3.204 26.489 29.099 Atomic orbital electron populations 1.21796 0.95490 1.01736 1.01269 1.21981 0.94898 1.01050 0.95645 0.90252 1.21377 0.84907 0.97245 0.95565 1.44405 1.00633 1.70065 1.17822 1.18928 0.98583 1.36104 0.85134 0.89606 1.25279 0.97987 0.98621 0.95644 1.69833 1.43269 1.37821 1.04136 0.86997 0.82594 0.82575 0.76845 1.21535 1.23103 1.19497 1.20893 0.97382 0.94133 0.85182 1.22447 0.94389 1.01864 0.99466 1.21111 0.94032 0.97106 0.82325 0.89897 1.46139 1.65856 1.14457 1.10180 1.20621 0.78606 0.87647 0.84777 1.90723 1.49508 1.16020 1.84514 1.21493 1.05778 0.91169 0.84216 1.45830 1.16229 1.39493 1.29056 1.20855 0.83508 0.82574 0.81649 1.90845 1.19906 1.50734 1.71901 1.22486 0.84361 0.99579 0.99517 1.47410 1.15830 1.42414 1.31300 1.21529 0.91503 0.90124 0.98756 1.15747 0.83181 0.79137 0.81166 1.90989 1.26598 1.69417 1.54171 0.92908 0.93084 0.92420 0.90456 0.95506 0.92757 0.95766 0.91546 0.92221 0.91701 0.76707 0.85704 0.85632 0.85817 0.85917 0.91934 0.89874 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.02 37.16 0.34 -1.74 16 2 C -0.11 -1.94 2.46 -90.50 -0.22 -2.17 16 3 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 4 C 0.14 2.92 3.49 -3.71 -0.01 2.91 16 5 N -0.61 -14.43 2.77 -172.32 -0.48 -14.91 16 6 C -0.26 -7.24 10.03 -15.06 -0.15 -7.39 16 7 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 8 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 9 N -0.91 -27.77 13.97 55.49 0.78 -26.99 16 10 Si 0.88 22.43 24.35 -169.99 -4.14 18.29 16 11 H -0.29 -7.00 6.62 56.52 0.37 -6.63 16 12 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 13 H -0.27 -6.84 6.64 56.52 0.38 -6.46 16 14 C 0.15 3.08 6.50 -3.71 -0.02 3.05 16 15 C -0.14 -2.47 5.68 -26.45 -0.15 -2.62 16 16 C 0.16 2.57 1.88 -67.73 -0.13 2.44 16 17 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 18 N -0.72 -9.16 4.37 -53.61 -0.23 -9.40 16 19 C 0.50 6.90 7.86 -10.98 -0.09 6.81 16 20 O -0.53 -9.56 16.09 5.56 0.09 -9.47 16 21 C 0.10 0.99 6.18 -5.19 -0.03 0.95 16 22 N -0.56 -6.16 2.09 -122.02 -0.26 -6.41 16 23 C 0.53 5.30 8.32 -10.55 -0.09 5.21 16 24 O -0.46 -5.93 17.76 5.59 0.10 -5.84 16 25 C 0.07 0.39 7.66 -4.31 -0.03 0.35 16 26 N -0.63 -4.91 3.42 -187.94 -0.64 -5.55 16 27 C 0.12 0.56 11.17 59.85 0.67 1.23 16 28 C 0.71 8.20 8.31 -88.02 -0.73 7.47 16 29 O -0.54 -8.00 17.15 5.34 0.09 -7.91 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.60 7.37 -51.93 -0.38 0.22 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.82 4.50 -51.93 -0.23 1.59 16 34 H 0.03 0.59 7.08 -51.93 -0.37 0.22 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 1.35 7.93 -51.93 -0.41 0.94 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.40 3.86 8.31 -40.82 -0.34 3.52 16 41 H 0.13 0.94 8.01 -51.93 -0.42 0.53 16 42 H 0.13 1.02 7.85 -51.93 -0.41 0.61 16 43 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 46 H 0.08 0.50 8.04 -51.93 -0.42 0.08 16 47 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 LS Contribution 380.58 15.07 5.74 5.74 Total: -1.00 -38.15 380.58 -6.91 -45.06 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.21 Total: 0.29 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: -0.75 Total: 17.11 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -0.83 Total: -63.26 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.28 Total: -23.22 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.14 Total: 18.29 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.15 -6.91 -45.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944790301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.696 kcal (2) G-P(sol) polarization free energy of solvation -38.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds