Wall clock time and date at job start Tue Mar 31 2020 21:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.52100 * 2 1 4 4 C 1.53190 * 109.49827 * 239.91847 * 2 1 3 5 5 N 1.46921 * 108.77699 * 185.40670 * 4 2 1 6 6 C 1.36933 * 120.63541 * 233.58568 * 5 4 2 7 7 H 1.08006 * 119.99850 * 152.60762 * 6 5 4 8 8 C 1.38814 * 120.00229 * 332.61611 * 6 5 4 9 9 N 1.31611 * 120.00350 * 159.29859 * 8 6 5 10 10 Si 1.86806 * 119.99611 * 339.29650 * 8 6 5 11 11 H 1.48501 * 109.46946 * 92.95681 * 10 8 6 12 12 H 1.48496 * 109.46962 * 212.96152 * 10 8 6 13 13 H 1.48503 * 109.47163 * 332.95915 * 10 8 6 14 14 C 1.46931 * 118.73631 * 53.61267 * 5 4 2 15 15 C 1.53196 * 108.89011 * 306.31722 * 14 5 4 16 16 C 1.53033 * 109.49788 * 120.07951 * 2 1 3 17 17 H 1.08995 * 109.46289 * 61.29890 * 16 2 1 18 18 N 1.46501 * 109.46047 * 301.32259 * 16 2 1 19 19 C 1.34781 * 119.99720 * 155.00204 * 18 16 2 20 20 O 1.21277 * 120.00019 * 0.02562 * 19 18 16 21 21 C 1.50705 * 119.99905 * 180.02562 * 19 18 16 22 22 N 1.46495 * 109.47208 * 179.97438 * 21 19 18 23 23 C 1.34768 * 124.17790 * 90.02369 * 22 21 19 24 24 O 1.21240 * 127.16003 * 359.97438 * 23 22 21 25 25 C 1.51588 * 105.68712 * 179.97438 * 23 22 21 26 26 N 1.47316 * 103.58850 * 359.97438 * 25 23 22 27 27 C 1.46501 * 126.68587 * 180.02562 * 26 25 23 28 28 C 1.33792 * 124.17731 * 269.72218 * 22 21 19 29 29 O 1.21535 * 123.76911 * 0.04259 * 28 22 21 30 30 H 1.09001 * 109.47057 * 180.08156 * 1 2 3 31 31 H 1.09000 * 109.47129 * 300.07784 * 1 2 3 32 32 H 1.08999 * 109.47508 * 60.08238 * 1 2 3 33 33 H 1.09004 * 109.58234 * 65.62091 * 4 2 1 34 34 H 1.09003 * 109.58771 * 305.20283 * 4 2 1 35 35 H 0.97002 * 120.00067 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.58809 * 66.17383 * 14 5 4 37 37 H 1.09000 * 109.58957 * 186.46227 * 14 5 4 38 38 H 1.09006 * 109.49545 * 174.65174 * 15 14 5 39 39 H 1.08998 * 109.50106 * 294.75381 * 15 14 5 40 40 H 0.96999 * 120.00320 * 334.99961 * 18 16 2 41 41 H 1.09006 * 109.47050 * 299.99831 * 21 19 18 42 42 H 1.08999 * 109.47463 * 59.99583 * 21 19 18 43 43 H 1.08998 * 110.59986 * 118.52011 * 25 23 22 44 44 H 1.08996 * 110.59366 * 241.32202 * 25 23 22 45 45 H 1.08996 * 109.47316 * 89.99751 * 27 26 25 46 46 H 1.09007 * 109.46534 * 209.99659 * 27 26 25 47 47 H 1.09000 * 109.46958 * 329.99314 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0414 -0.7238 -1.2496 5 7 3.5046 -0.8290 -1.1696 6 6 4.2935 -0.3792 -2.1945 7 1 5.3004 -0.0440 -1.9938 8 6 3.7991 -0.3539 -3.4914 9 7 4.3569 0.4257 -4.3932 10 14 2.3421 -1.4265 -3.9565 11 1 1.0855 -0.6520 -3.7942 12 1 2.4777 -1.8595 -5.3705 13 1 2.3050 -2.6207 -3.0745 14 6 4.1054 -1.4266 0.0307 15 6 3.5740 -0.6955 1.2677 16 6 2.0408 -0.7230 1.2483 17 1 1.6968 -1.7572 1.2353 18 7 1.5268 -0.0527 2.4452 19 6 1.3988 -0.7379 3.5988 20 8 1.7096 -1.9092 3.6460 21 6 0.8696 -0.0485 4.8300 22 7 0.8261 -1.0008 5.9423 23 6 1.8422 -1.2059 6.8035 24 8 2.9239 -0.6583 6.8036 25 6 1.3515 -2.2637 7.7720 26 7 -0.0124 -2.5591 7.3000 27 6 -0.9513 -3.5207 7.8832 28 6 -0.2294 -1.7701 6.2322 29 8 -1.2671 -1.7597 5.5996 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3633 0.5150 0.8893 32 1 -0.3634 0.5125 -0.8907 33 1 1.7637 -0.1579 -2.1389 34 1 1.6053 -1.7216 -1.2980 35 1 4.0116 0.4431 -5.2996 36 1 3.8377 -2.4817 0.0867 37 1 5.1898 -1.3266 -0.0150 38 1 3.9387 -1.1909 2.1676 39 1 3.9191 0.3383 1.2556 40 1 1.2786 0.8843 2.4076 41 1 1.5233 0.7843 5.0895 42 1 -0.1350 0.3260 4.6332 43 1 1.9778 -3.1541 7.7171 44 1 1.3311 -1.8725 8.7891 45 1 -1.5559 -3.0239 8.6419 46 1 -1.6009 -3.9140 7.1012 47 1 -0.3957 -4.3396 8.3400 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944790301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:14 Heat of formation + Delta-G solvation = -68.361738 kcal Electronic energy + Delta-G solvation = -30466.964334 eV Core-core repulsion = 26264.808823 eV Total energy + Delta-G solvation = -4202.155511 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.42628 -41.14222 -39.74822 -39.41261 -37.30269 -36.43113 -36.06437 -34.20567 -33.64857 -32.18460 -30.97747 -28.73044 -27.70512 -27.32982 -26.50544 -24.38330 -23.50271 -22.49742 -22.12995 -21.40349 -20.93631 -19.17548 -18.73855 -18.57989 -17.83304 -17.63365 -17.46341 -16.87891 -16.52286 -16.17690 -16.05464 -15.88355 -15.51660 -15.35376 -15.19142 -15.07331 -14.96423 -14.74157 -14.47415 -14.40270 -14.11011 -13.60269 -13.44535 -13.31938 -13.26051 -13.21095 -13.02088 -12.59099 -12.39908 -12.09780 -12.08757 -11.98470 -11.79630 -11.67974 -11.56924 -11.39549 -11.33330 -10.83922 -10.62548 -10.11348 -9.98323 -9.00095 -8.18924 -5.51353 0.57883 0.91656 1.26475 1.39563 1.46674 1.48097 1.73918 2.00380 2.24025 2.38440 3.00853 3.01608 3.27439 3.55999 3.65790 3.66774 3.89241 4.00657 4.10148 4.15440 4.22910 4.23235 4.30175 4.36352 4.40291 4.49202 4.57835 4.66498 4.67973 4.73647 4.83310 4.89121 4.91592 4.95329 4.96710 5.03133 5.16913 5.25496 5.37644 5.38319 5.45768 5.83868 5.99967 6.10270 6.26992 6.44944 6.87052 6.94181 7.12428 7.57846 7.98747 9.00775 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023606 B = 0.002647 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.846671 B =10574.279856 C =11051.275185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 H 0.083 0.917 4 C 0.129 3.871 5 N -0.619 5.619 6 C -0.249 4.249 7 H 0.055 0.945 8 C -0.030 4.030 9 N -0.953 5.953 10 Si 0.940 3.060 11 H -0.268 1.268 12 H -0.310 1.310 13 H -0.269 1.269 14 C 0.147 3.853 15 C -0.128 4.128 16 C 0.169 3.831 17 H 0.063 0.937 18 N -0.702 5.702 19 C 0.497 3.503 20 O -0.577 6.577 21 C 0.100 3.900 22 N -0.568 5.568 23 C 0.519 3.481 24 O -0.499 6.499 25 C 0.075 3.925 26 N -0.623 5.623 27 C 0.115 3.885 28 C 0.694 3.306 29 O -0.582 6.582 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.026 0.974 35 H 0.263 0.737 36 H 0.025 0.975 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.418 0.582 41 H 0.152 0.848 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.165 0.835 45 H 0.080 0.920 46 H 0.064 0.936 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.812 -2.730 30.548 33.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 H 0.101 0.899 4 C 0.004 3.996 5 N -0.343 5.343 6 C -0.379 4.379 7 H 0.073 0.927 8 C -0.225 4.225 9 N -0.599 5.599 10 Si 0.769 3.231 11 H -0.194 1.194 12 H -0.239 1.239 13 H -0.194 1.194 14 C 0.021 3.979 15 C -0.168 4.168 16 C 0.064 3.936 17 H 0.081 0.919 18 N -0.354 5.354 19 C 0.283 3.717 20 O -0.456 6.456 21 C -0.025 4.025 22 N -0.313 5.313 23 C 0.309 3.691 24 O -0.370 6.370 25 C -0.050 4.050 26 N -0.361 5.361 27 C -0.025 4.025 28 C 0.396 3.604 29 O -0.458 6.458 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.255 0.745 41 H 0.169 0.831 42 H 0.164 0.836 43 H 0.164 0.836 44 H 0.183 0.817 45 H 0.099 0.901 46 H 0.083 0.917 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.634 -3.288 30.134 32.840 hybrid contribution -0.228 -0.069 -1.317 1.339 sum -12.862 -3.356 28.817 31.735 Atomic orbital electron populations 1.21774 0.93007 1.02040 1.02988 1.21780 0.96836 1.00307 0.93480 0.89915 1.21426 0.83494 0.97435 0.97280 1.44508 1.01510 1.70549 1.17694 1.18862 0.97895 1.34720 0.86378 0.92736 1.25843 1.01173 0.99827 0.95656 1.69947 1.45661 1.39742 1.04543 0.86016 0.80494 0.80841 0.75764 1.19397 1.23875 1.19368 1.20995 0.97172 0.94426 0.85266 1.22258 0.95422 1.01390 0.97715 1.20728 0.92995 0.96381 0.83535 0.91879 1.45867 1.65298 1.15249 1.08983 1.21304 0.77546 0.87168 0.85676 1.90703 1.51472 1.18138 1.85281 1.21632 1.07268 0.91202 0.82425 1.46009 1.16498 1.39553 1.29202 1.21555 0.82785 0.82840 0.81925 1.90827 1.21046 1.52238 1.72913 1.22747 0.83132 0.99099 1.00019 1.47680 1.16861 1.41512 1.30046 1.21810 0.91595 0.90603 0.98469 1.16042 0.82779 0.79656 0.81889 1.90949 1.28128 1.70909 1.55859 0.93323 0.90047 0.92085 0.92304 0.95631 0.92836 0.95678 0.92175 0.91919 0.91464 0.74474 0.83086 0.83573 0.83629 0.81748 0.90116 0.91698 0.86901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.02 71.98 0.65 -2.98 16 2 C -0.10 -3.31 2.46 -10.72 -0.03 -3.34 16 3 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 4 C 0.13 5.47 3.49 86.36 0.30 5.77 16 5 N -0.62 -29.60 2.77 -699.09 -1.94 -31.54 16 6 C -0.25 -14.24 10.03 84.03 0.84 -13.40 16 7 H 0.05 3.39 8.06 -2.91 -0.02 3.37 16 8 C -0.03 -1.76 5.23 84.86 0.44 -1.31 16 9 N -0.95 -59.87 13.97 21.65 0.30 -59.57 16 10 Si 0.94 46.97 24.35 68.60 1.67 48.64 16 11 H -0.27 -12.39 6.62 99.48 0.66 -11.73 16 12 H -0.31 -15.74 7.11 99.48 0.71 -15.03 16 13 H -0.27 -13.21 6.64 99.48 0.66 -12.55 16 14 C 0.15 6.04 6.50 86.36 0.56 6.60 16 15 C -0.13 -4.36 5.68 30.78 0.17 -4.18 16 16 C 0.17 5.24 1.88 45.12 0.08 5.33 16 17 H 0.06 2.27 7.58 -2.39 -0.02 2.26 16 18 N -0.70 -16.40 4.37 -441.91 -1.93 -18.33 16 19 C 0.50 12.90 7.86 87.66 0.69 13.59 16 20 O -0.58 -20.34 16.09 -3.02 -0.05 -20.39 16 21 C 0.10 1.78 6.18 85.64 0.53 2.30 16 22 N -0.57 -11.45 2.09 -777.20 -1.63 -13.08 16 23 C 0.52 9.36 8.32 87.94 0.73 10.09 16 24 O -0.50 -11.96 17.76 -2.91 -0.05 -12.01 16 25 C 0.07 0.60 7.66 85.76 0.66 1.26 16 26 N -0.62 -8.05 3.42 -866.95 -2.96 -11.02 16 27 C 0.11 0.74 11.17 127.77 1.43 2.17 16 28 C 0.69 15.07 8.31 179.44 1.49 16.56 16 29 O -0.58 -16.88 17.15 -3.82 -0.07 -16.94 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 1.62 7.37 -2.39 -0.02 1.60 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.06 2.71 4.50 -2.38 -0.01 2.70 16 34 H 0.03 1.10 7.08 -2.39 -0.02 1.08 16 35 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 36 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 38 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.42 6.72 8.31 -92.71 -0.77 5.95 16 41 H 0.15 1.87 8.01 -2.38 -0.02 1.85 16 42 H 0.15 2.00 7.85 -2.39 -0.02 1.98 16 43 H 0.15 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.17 0.05 8.14 -2.39 -0.02 0.03 16 45 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 46 H 0.06 0.69 8.04 -2.38 -0.02 0.67 16 47 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 Total: -1.00 -86.59 380.58 2.04 -84.55 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.13 Total: 11.24 kcal Atomic # 6 Polarization: 29.89 SS G_CDS: 8.56 Total: 38.45 kcal Atomic # 7 Polarization: -125.38 SS G_CDS: -8.15 Total: -133.53 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -0.17 Total: -49.34 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 1.67 Total: 48.64 kcal Total: -86.59 2.04 -84.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944790301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.187 kcal (2) G-P(sol) polarization free energy of solvation -86.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds