Wall clock time and date at job start Tue Mar 31 2020 21:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.52102 * 2 1 4 4 C 1.53185 * 109.49591 * 120.08376 * 2 1 3 5 5 N 1.46938 * 108.77353 * 174.58506 * 4 2 1 6 6 C 1.36938 * 120.62896 * 126.41263 * 5 4 2 7 7 H 1.08000 * 119.99621 * 331.80907 * 6 5 4 8 8 C 1.38813 * 119.99858 * 151.80922 * 6 5 4 9 9 N 1.31615 * 119.99942 * 343.08535 * 8 6 5 10 10 Si 1.86799 * 119.99873 * 163.08793 * 8 6 5 11 11 H 1.48497 * 109.47297 * 59.99890 * 10 8 6 12 12 H 1.48501 * 109.47142 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46963 * 299.99753 * 10 8 6 14 14 C 1.46924 * 118.73919 * 306.39533 * 5 4 2 15 15 C 1.53186 * 108.77871 * 53.60506 * 14 5 4 16 16 C 1.53039 * 109.49722 * 239.92435 * 2 1 3 17 17 H 1.09004 * 109.45991 * 298.70498 * 16 2 1 18 18 N 1.46499 * 109.46206 * 58.67357 * 16 2 1 19 19 C 1.34779 * 120.00136 * 204.99718 * 18 16 2 20 20 O 1.21282 * 119.99937 * 0.02562 * 19 18 16 21 21 C 1.50698 * 120.00031 * 180.02562 * 19 18 16 22 22 N 1.46504 * 109.47017 * 180.02562 * 21 19 18 23 23 C 1.34762 * 124.17910 * 269.69962 * 22 21 19 24 24 O 1.21238 * 127.15857 * 0.02562 * 23 22 21 25 25 C 1.51583 * 105.68627 * 179.97438 * 23 22 21 26 26 N 1.47312 * 103.59162 * 0.31856 * 25 23 22 27 27 C 1.46505 * 126.69146 * 179.76737 * 26 25 23 28 28 C 1.33792 * 124.17347 * 90.00428 * 22 21 19 29 29 O 1.21535 * 123.77312 * 359.95889 * 28 22 21 30 30 H 1.08992 * 109.47229 * 299.91647 * 1 2 3 31 31 H 1.09006 * 109.47208 * 59.91647 * 1 2 3 32 32 H 1.08995 * 109.47088 * 179.91184 * 1 2 3 33 33 H 1.08993 * 109.58842 * 54.80236 * 4 2 1 34 34 H 1.08993 * 109.70917 * 294.44186 * 4 2 1 35 35 H 0.96999 * 119.99981 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.58374 * 173.39659 * 14 5 4 37 37 H 1.09000 * 109.58464 * 293.81861 * 14 5 4 38 38 H 1.08998 * 109.49934 * 65.31730 * 15 14 5 39 39 H 1.09000 * 109.50251 * 185.41704 * 15 14 5 40 40 H 0.96997 * 120.00288 * 25.00708 * 18 16 2 41 41 H 1.08993 * 109.47349 * 300.00323 * 21 19 18 42 42 H 1.09000 * 109.46943 * 60.00576 * 21 19 18 43 43 H 1.08997 * 110.76422 * 241.71752 * 25 23 22 44 44 H 1.08998 * 110.56432 * 118.82968 * 25 23 22 45 45 H 1.08996 * 109.46875 * 180.02562 * 27 26 25 46 46 H 1.08996 * 109.47166 * 300.02138 * 27 26 25 47 47 H 1.09000 * 109.46590 * 60.02166 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7238 1.2495 5 7 3.5047 -0.8292 1.1695 6 6 4.2936 -0.3794 2.1944 7 1 3.9501 0.4259 2.8268 8 6 5.5348 -0.9585 2.4204 9 7 5.8206 -2.1296 1.8920 10 14 6.7993 -0.0756 3.4744 11 1 6.2480 0.1345 4.8371 12 1 8.0325 -0.8984 3.5613 13 1 7.1225 1.2385 2.8631 14 6 4.1053 -1.4266 -0.0309 15 6 3.5709 -0.6949 -1.2661 16 6 2.0408 -0.7230 -1.2484 17 1 1.6967 -1.7572 -1.2355 18 7 1.5267 -0.0526 -2.4453 19 6 1.3987 -0.7377 -3.5989 20 8 1.7087 -1.9093 -3.6460 21 6 0.8705 -0.0480 -4.8302 22 7 0.8268 -1.0003 -5.9426 23 6 1.8412 -1.2024 -6.8065 24 8 2.9212 -0.6516 -6.8096 25 6 1.3514 -2.2625 -7.7730 26 7 -0.0128 -2.5571 -7.3014 27 6 -0.9526 -3.5173 -7.8856 28 6 -0.2272 -1.7727 -6.2297 29 8 -1.2632 -1.7654 -5.5943 30 1 -0.3633 0.5125 0.8907 31 1 -0.3634 0.5152 -0.8893 32 1 -0.3633 -1.0276 -0.0016 33 1 1.6053 -1.7216 1.2979 34 1 1.7637 -0.1603 2.1402 35 1 6.6880 -2.5340 2.0497 36 1 5.1896 -1.3245 0.0136 37 1 3.8376 -2.4818 -0.0870 38 1 3.9159 0.3389 -1.2542 39 1 3.9334 -1.1895 -2.1672 40 1 1.2786 0.8843 -2.4076 41 1 -0.1338 0.3272 -4.6339 42 1 1.5250 0.7842 -5.0895 43 1 1.9767 -3.1536 -7.7186 44 1 1.3295 -1.8722 -8.7905 45 1 -1.8814 -3.5095 -7.3151 46 1 -1.1590 -3.2406 -8.9194 47 1 -0.5167 -4.5159 -7.8567 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944790303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:24 Heat of formation + Delta-G solvation = -45.015480 kcal Electronic energy + Delta-G solvation = -30367.030311 eV Core-core repulsion = 26165.887170 eV Total energy + Delta-G solvation = -4201.143141 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.61430 -39.77240 -38.84914 -37.69427 -36.42883 -35.38904 -34.53240 -32.71855 -31.23459 -30.72842 -29.70955 -27.83907 -26.58553 -25.84551 -24.84418 -22.78212 -22.33028 -21.08192 -20.84757 -20.16683 -19.32034 -17.91397 -17.80258 -17.02150 -16.80052 -16.50127 -16.06049 -15.59208 -15.13953 -14.98177 -14.76321 -14.67318 -14.34168 -14.28995 -13.88985 -13.67797 -13.57714 -13.23821 -12.96029 -12.86112 -12.76808 -12.68130 -12.42669 -12.02359 -11.46324 -11.30411 -11.22287 -11.04880 -10.81335 -10.65936 -10.59603 -10.51538 -10.33945 -10.23602 -9.99860 -9.77874 -9.74379 -9.44928 -9.30800 -8.72260 -8.41470 -6.67213 -5.77296 -3.20676 1.38605 1.67677 2.55627 2.65667 2.73156 3.35316 3.40004 3.45411 3.46301 3.71050 4.31296 4.50147 4.60197 4.67579 4.75661 4.79694 4.88878 4.99861 5.11305 5.18650 5.26235 5.32241 5.41668 5.50206 5.51690 5.62110 5.91231 5.99381 6.03674 6.11895 6.26142 6.28584 6.35945 6.46530 6.61312 6.68334 6.78158 6.79095 6.91639 6.97310 7.07274 7.38134 7.60013 7.69393 7.78847 7.80337 8.29209 8.46140 9.21908 9.85233 10.42079 11.31241 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.002599 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.874875 B =10772.765866 C =11438.291389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 H 0.072 0.928 4 C 0.155 3.845 5 N -0.592 5.592 6 C -0.255 4.255 7 H 0.065 0.935 8 C 0.003 3.997 9 N -0.901 5.901 10 Si 0.903 3.097 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.284 1.284 14 C 0.174 3.826 15 C -0.147 4.147 16 C 0.158 3.842 17 H 0.082 0.918 18 N -0.716 5.716 19 C 0.498 3.502 20 O -0.530 6.530 21 C 0.099 3.901 22 N -0.561 5.561 23 C 0.527 3.473 24 O -0.464 6.464 25 C 0.067 3.933 26 N -0.630 5.630 27 C 0.119 3.881 28 C 0.706 3.294 29 O -0.540 6.540 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.020 0.980 34 H 0.058 0.942 35 H 0.255 0.745 36 H 0.089 0.911 37 H 0.020 0.980 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.396 0.604 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.090 0.910 46 H 0.068 0.932 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.709 2.856 -21.634 25.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 H 0.090 0.910 4 C 0.027 3.973 5 N -0.315 5.315 6 C -0.385 4.385 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.545 5.545 10 Si 0.733 3.267 11 H -0.209 1.209 12 H -0.216 1.216 13 H -0.210 1.210 14 C 0.048 3.952 15 C -0.187 4.187 16 C 0.055 3.945 17 H 0.100 0.900 18 N -0.367 5.367 19 C 0.282 3.718 20 O -0.406 6.406 21 C -0.026 4.026 22 N -0.306 5.306 23 C 0.314 3.686 24 O -0.333 6.333 25 C -0.059 4.059 26 N -0.370 5.370 27 C -0.021 4.021 28 C 0.409 3.591 29 O -0.413 6.413 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.038 0.962 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.230 0.770 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.109 0.891 46 H 0.086 0.914 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.374 2.134 -21.282 25.226 hybrid contribution 0.677 0.815 0.532 1.185 sum -12.698 2.948 -20.750 24.505 Atomic orbital electron populations 1.21772 0.95712 1.01643 1.00854 1.21969 0.94552 1.00600 0.96385 0.90981 1.20891 0.85988 0.96637 0.93736 1.44096 0.99276 1.71472 1.16608 1.19125 0.98589 1.11994 1.08793 0.91682 1.25065 0.99975 0.95312 0.99223 1.70024 1.22237 1.14424 1.47843 0.86365 0.81072 0.79048 0.80238 1.20877 1.21640 1.21039 1.20748 0.99408 0.93064 0.81971 1.22577 0.93789 1.01593 1.00787 1.21094 0.94575 0.96865 0.81951 0.90036 1.46188 1.65857 1.14275 1.10365 1.20596 0.78754 0.87704 0.84784 1.90736 1.49379 1.16008 1.84459 1.21496 1.05656 0.91162 0.84319 1.45822 1.16396 1.39388 1.28983 1.20846 0.83480 0.82623 0.81657 1.90847 1.19929 1.50626 1.71913 1.22467 0.84398 0.99554 0.99489 1.47399 1.15829 1.42680 1.31050 1.21544 0.92217 0.90145 0.98229 1.15747 0.83165 0.79052 0.81177 1.90981 1.26736 1.69582 1.54032 0.92699 0.93433 0.92899 0.96228 0.92330 0.93514 0.89251 0.96208 0.92565 0.92876 0.77008 0.85740 0.85804 0.85799 0.85971 0.89127 0.91368 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.02 37.16 0.34 -1.58 16 2 C -0.11 -1.89 2.46 -90.50 -0.22 -2.12 16 3 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.15 3.21 5.80 -3.71 -0.02 3.19 16 5 N -0.59 -14.90 2.99 -172.33 -0.52 -15.41 16 6 C -0.26 -7.01 9.58 -15.06 -0.14 -7.15 16 7 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 8 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 9 N -0.90 -26.57 11.20 55.49 0.62 -25.95 16 10 Si 0.90 21.81 29.59 -169.99 -5.03 16.78 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 14 C 0.17 4.31 5.30 -3.72 -0.02 4.29 16 15 C -0.15 -2.99 5.65 -26.61 -0.15 -3.15 16 16 C 0.16 2.79 1.88 -67.89 -0.13 2.66 16 17 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 18 N -0.72 -9.95 4.37 -53.76 -0.23 -10.18 16 19 C 0.50 7.48 7.86 -10.99 -0.09 7.40 16 20 O -0.53 -10.37 16.09 5.56 0.09 -10.28 16 21 C 0.10 1.08 6.18 -5.19 -0.03 1.04 16 22 N -0.56 -6.64 2.09 -122.02 -0.26 -6.89 16 23 C 0.53 5.80 8.32 -10.56 -0.09 5.71 16 24 O -0.46 -6.41 17.75 5.59 0.10 -6.31 16 25 C 0.07 0.44 7.66 -4.32 -0.03 0.41 16 26 N -0.63 -5.35 3.42 -187.95 -0.64 -5.99 16 27 C 0.12 0.62 11.33 59.85 0.68 1.30 16 28 C 0.71 8.69 8.31 -88.02 -0.73 7.96 16 29 O -0.54 -8.29 16.92 5.33 0.09 -8.20 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.55 7.37 -51.93 -0.38 0.17 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 35 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.09 2.46 6.06 -51.93 -0.31 2.15 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.40 4.14 8.31 -40.82 -0.34 3.80 16 41 H 0.12 1.09 7.86 -51.93 -0.41 0.68 16 42 H 0.12 1.05 8.00 -51.93 -0.42 0.63 16 43 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.12 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.09 0.58 7.67 -51.93 -0.40 0.18 16 46 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 47 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 386.54 15.07 5.83 5.83 Total: -1.00 -37.50 386.54 -7.94 -45.44 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -7.26 Total: 1.21 kcal Atomic # 6 Polarization: 20.69 SS G_CDS: -0.73 Total: 19.96 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: -1.03 Total: -64.43 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: 0.28 Total: -24.78 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.50 -7.94 -45.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944790303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.429 kcal (2) G-P(sol) polarization free energy of solvation -37.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds