Wall clock time and date at job start Tue Mar 31 2020 21:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.52102 * 2 1 4 4 C 1.53185 * 109.49591 * 120.08376 * 2 1 3 5 5 N 1.46938 * 108.77353 * 174.58506 * 4 2 1 6 6 C 1.36938 * 120.62896 * 126.41263 * 5 4 2 7 7 H 1.08000 * 119.99621 * 331.80907 * 6 5 4 8 8 C 1.38813 * 119.99858 * 151.80922 * 6 5 4 9 9 N 1.31615 * 119.99942 * 343.08535 * 8 6 5 10 10 Si 1.86799 * 119.99873 * 163.08793 * 8 6 5 11 11 H 1.48497 * 109.47297 * 59.99890 * 10 8 6 12 12 H 1.48501 * 109.47142 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46963 * 299.99753 * 10 8 6 14 14 C 1.46924 * 118.73919 * 306.39533 * 5 4 2 15 15 C 1.53186 * 108.77871 * 53.60506 * 14 5 4 16 16 C 1.53039 * 109.49722 * 239.92435 * 2 1 3 17 17 H 1.09004 * 109.45991 * 298.70498 * 16 2 1 18 18 N 1.46499 * 109.46206 * 58.67357 * 16 2 1 19 19 C 1.34779 * 120.00136 * 204.99718 * 18 16 2 20 20 O 1.21282 * 119.99937 * 0.02562 * 19 18 16 21 21 C 1.50698 * 120.00031 * 180.02562 * 19 18 16 22 22 N 1.46504 * 109.47017 * 180.02562 * 21 19 18 23 23 C 1.34762 * 124.17910 * 269.69962 * 22 21 19 24 24 O 1.21238 * 127.15857 * 0.02562 * 23 22 21 25 25 C 1.51583 * 105.68627 * 179.97438 * 23 22 21 26 26 N 1.47312 * 103.59162 * 0.31856 * 25 23 22 27 27 C 1.46505 * 126.69146 * 179.76737 * 26 25 23 28 28 C 1.33792 * 124.17347 * 90.00428 * 22 21 19 29 29 O 1.21535 * 123.77312 * 359.95889 * 28 22 21 30 30 H 1.08992 * 109.47229 * 299.91647 * 1 2 3 31 31 H 1.09006 * 109.47208 * 59.91647 * 1 2 3 32 32 H 1.08995 * 109.47088 * 179.91184 * 1 2 3 33 33 H 1.08993 * 109.58842 * 54.80236 * 4 2 1 34 34 H 1.08993 * 109.70917 * 294.44186 * 4 2 1 35 35 H 0.96999 * 119.99981 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.58374 * 173.39659 * 14 5 4 37 37 H 1.09000 * 109.58464 * 293.81861 * 14 5 4 38 38 H 1.08998 * 109.49934 * 65.31730 * 15 14 5 39 39 H 1.09000 * 109.50251 * 185.41704 * 15 14 5 40 40 H 0.96997 * 120.00288 * 25.00708 * 18 16 2 41 41 H 1.08993 * 109.47349 * 300.00323 * 21 19 18 42 42 H 1.09000 * 109.46943 * 60.00576 * 21 19 18 43 43 H 1.08997 * 110.76422 * 241.71752 * 25 23 22 44 44 H 1.08998 * 110.56432 * 118.82968 * 25 23 22 45 45 H 1.08996 * 109.46875 * 180.02562 * 27 26 25 46 46 H 1.08996 * 109.47166 * 300.02138 * 27 26 25 47 47 H 1.09000 * 109.46590 * 60.02166 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7238 1.2495 5 7 3.5047 -0.8292 1.1695 6 6 4.2936 -0.3794 2.1944 7 1 3.9501 0.4259 2.8268 8 6 5.5348 -0.9585 2.4204 9 7 5.8206 -2.1296 1.8920 10 14 6.7993 -0.0756 3.4744 11 1 6.2480 0.1345 4.8371 12 1 8.0325 -0.8984 3.5613 13 1 7.1225 1.2385 2.8631 14 6 4.1053 -1.4266 -0.0309 15 6 3.5709 -0.6949 -1.2661 16 6 2.0408 -0.7230 -1.2484 17 1 1.6967 -1.7572 -1.2355 18 7 1.5267 -0.0526 -2.4453 19 6 1.3987 -0.7377 -3.5989 20 8 1.7087 -1.9093 -3.6460 21 6 0.8705 -0.0480 -4.8302 22 7 0.8268 -1.0003 -5.9426 23 6 1.8412 -1.2024 -6.8065 24 8 2.9212 -0.6516 -6.8096 25 6 1.3514 -2.2625 -7.7730 26 7 -0.0128 -2.5571 -7.3014 27 6 -0.9526 -3.5173 -7.8856 28 6 -0.2272 -1.7727 -6.2297 29 8 -1.2632 -1.7654 -5.5943 30 1 -0.3633 0.5125 0.8907 31 1 -0.3634 0.5152 -0.8893 32 1 -0.3633 -1.0276 -0.0016 33 1 1.6053 -1.7216 1.2979 34 1 1.7637 -0.1603 2.1402 35 1 6.6880 -2.5340 2.0497 36 1 5.1896 -1.3245 0.0136 37 1 3.8376 -2.4818 -0.0870 38 1 3.9159 0.3389 -1.2542 39 1 3.9334 -1.1895 -2.1672 40 1 1.2786 0.8843 -2.4076 41 1 -0.1338 0.3272 -4.6339 42 1 1.5250 0.7842 -5.0895 43 1 1.9767 -3.1536 -7.7186 44 1 1.3295 -1.8722 -8.7905 45 1 -1.8814 -3.5095 -7.3151 46 1 -1.1590 -3.2406 -8.9194 47 1 -0.5167 -4.5159 -7.8567 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944790303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:23 Heat of formation + Delta-G solvation = -72.460754 kcal Electronic energy + Delta-G solvation = -30368.220428 eV Core-core repulsion = 26165.887170 eV Total energy + Delta-G solvation = -4202.333258 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.43274 -41.08986 -39.75569 -39.24080 -37.30261 -36.38429 -36.06823 -34.28492 -32.96788 -32.05102 -30.91837 -28.71292 -27.44283 -27.33442 -26.51920 -24.04588 -23.48305 -22.69133 -22.04163 -21.35761 -20.74342 -18.99303 -18.73209 -18.56237 -17.84245 -17.57886 -17.25524 -16.80413 -16.50937 -16.17849 -15.89608 -15.64085 -15.57849 -15.43837 -15.17323 -15.08135 -14.79679 -14.63280 -14.45635 -14.25602 -13.68120 -13.40986 -13.37164 -13.21618 -13.07073 -13.00911 -12.74788 -12.59363 -12.35359 -12.12705 -12.12012 -12.06956 -11.78324 -11.62708 -11.60909 -11.40175 -11.29786 -10.69488 -10.58376 -10.07688 -9.98305 -8.73931 -7.89367 -5.36502 0.56804 0.91556 1.46426 1.47535 1.49348 1.56158 1.74292 2.00015 2.25474 2.50111 3.00329 3.26289 3.54465 3.65452 3.65863 3.74023 3.99112 4.09756 4.12802 4.15718 4.22735 4.30118 4.34244 4.35942 4.56969 4.69111 4.69287 4.70484 4.82902 4.86440 4.89401 4.94104 4.98187 5.08161 5.11356 5.26927 5.35580 5.38372 5.47487 5.49237 5.61018 5.65866 5.99136 6.26185 6.35777 6.46760 6.93803 7.10465 7.15536 7.81055 8.34544 9.17693 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.002599 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.874875 B =10772.765866 C =11438.291389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 H 0.085 0.915 4 C 0.149 3.851 5 N -0.609 5.609 6 C -0.263 4.263 7 H 0.075 0.925 8 C -0.054 4.054 9 N -0.939 5.939 10 Si 0.971 3.029 11 H -0.272 1.272 12 H -0.297 1.297 13 H -0.276 1.276 14 C 0.184 3.816 15 C -0.131 4.131 16 C 0.171 3.829 17 H 0.051 0.949 18 N -0.700 5.700 19 C 0.493 3.507 20 O -0.581 6.581 21 C 0.102 3.898 22 N -0.569 5.569 23 C 0.518 3.482 24 O -0.500 6.500 25 C 0.075 3.925 26 N -0.623 5.623 27 C 0.112 3.888 28 C 0.695 3.305 29 O -0.581 6.581 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.006 0.994 34 H 0.067 0.933 35 H 0.249 0.751 36 H 0.056 0.944 37 H -0.015 1.015 38 H 0.065 0.935 39 H 0.041 0.959 40 H 0.418 0.582 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.144 0.856 44 H 0.167 0.833 45 H 0.074 0.926 46 H 0.101 0.899 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.132 4.905 -23.373 28.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.119 4.119 3 H 0.103 0.897 4 C 0.023 3.977 5 N -0.332 5.332 6 C -0.393 4.393 7 H 0.092 0.908 8 C -0.250 4.250 9 N -0.585 5.585 10 Si 0.799 3.201 11 H -0.198 1.198 12 H -0.224 1.224 13 H -0.202 1.202 14 C 0.058 3.942 15 C -0.171 4.171 16 C 0.066 3.934 17 H 0.069 0.931 18 N -0.352 5.352 19 C 0.279 3.721 20 O -0.460 6.460 21 C -0.023 4.023 22 N -0.313 5.313 23 C 0.308 3.692 24 O -0.371 6.371 25 C -0.049 4.049 26 N -0.361 5.361 27 C -0.027 4.027 28 C 0.397 3.603 29 O -0.457 6.457 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.024 0.976 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.003 0.997 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.256 0.744 41 H 0.167 0.833 42 H 0.169 0.831 43 H 0.161 0.839 44 H 0.184 0.816 45 H 0.093 0.907 46 H 0.120 0.880 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.847 4.221 -23.062 27.751 hybrid contribution 1.082 0.099 1.050 1.511 sum -13.765 4.319 -22.012 26.318 Atomic orbital electron populations 1.21719 0.92703 1.01664 1.03091 1.21761 0.96830 1.00046 0.93278 0.89669 1.21091 0.83480 0.96674 0.96458 1.44340 1.01121 1.71406 1.16291 1.19541 0.99041 1.11846 1.08894 0.90766 1.25907 1.02038 0.95961 1.01050 1.70207 1.22311 1.16157 1.49865 0.85283 0.78097 0.77790 0.78937 1.19764 1.22375 1.20152 1.20437 0.97647 0.91904 0.84237 1.22312 0.96017 1.00953 0.97806 1.20652 0.92455 0.96065 0.84236 0.93119 1.45870 1.65163 1.15187 1.09022 1.21404 0.77597 0.87201 0.85877 1.90716 1.51549 1.18454 1.85328 1.21634 1.07339 0.91102 0.82240 1.46011 1.16693 1.39500 1.29101 1.21569 0.82754 0.82899 0.81977 1.90826 1.21119 1.52194 1.72987 1.22714 0.83220 0.98920 1.00094 1.47674 1.16830 1.41840 1.29768 1.21831 0.91081 0.90334 0.99432 1.16033 0.82767 0.79598 0.81889 1.90942 1.28172 1.71013 1.55622 0.90944 0.90732 0.94025 0.97609 0.91422 0.94153 0.92579 0.99683 0.91663 0.93985 0.74396 0.83269 0.83092 0.83901 0.81586 0.90738 0.88037 0.89653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 9.02 71.98 0.65 -2.62 16 2 C -0.10 -3.13 2.46 -10.72 -0.03 -3.15 16 3 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 4 C 0.15 6.18 5.80 86.36 0.50 6.68 16 5 N -0.61 -31.33 2.99 -699.12 -2.09 -33.42 16 6 C -0.26 -14.59 9.58 84.03 0.81 -13.78 16 7 H 0.07 3.91 7.89 -2.91 -0.02 3.88 16 8 C -0.05 -3.10 4.92 84.86 0.42 -2.69 16 9 N -0.94 -57.71 11.20 21.65 0.24 -57.47 16 10 Si 0.97 45.43 29.59 68.60 2.03 47.46 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 12 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 13 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 14 C 0.18 9.61 5.30 86.36 0.46 10.07 16 15 C -0.13 -5.45 5.65 30.67 0.17 -5.28 16 16 C 0.17 6.00 1.88 45.02 0.08 6.09 16 17 H 0.05 2.13 7.58 -2.39 -0.02 2.11 16 18 N -0.70 -18.41 4.37 -442.39 -1.93 -20.34 16 19 C 0.49 14.49 7.86 87.66 0.69 15.18 16 20 O -0.58 -23.23 16.09 -3.04 -0.05 -23.28 16 21 C 0.10 2.03 6.18 85.63 0.53 2.56 16 22 N -0.57 -12.74 2.09 -777.22 -1.63 -14.37 16 23 C 0.52 10.65 8.32 87.94 0.73 11.38 16 24 O -0.50 -13.36 17.75 -2.90 -0.05 -13.41 16 25 C 0.08 0.78 7.66 85.76 0.66 1.43 16 26 N -0.62 -9.21 3.42 -866.96 -2.96 -12.17 16 27 C 0.11 0.90 11.33 127.77 1.45 2.34 16 28 C 0.69 16.35 8.31 179.44 1.49 17.85 16 29 O -0.58 -17.63 16.92 -3.83 -0.06 -17.70 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 31 H 0.07 1.44 7.37 -2.38 -0.02 1.43 16 32 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.07 2.66 7.93 -2.39 -0.02 2.64 16 35 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 36 H 0.06 3.27 6.06 -2.39 -0.01 3.26 16 37 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 38 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.42 7.41 8.31 -92.71 -0.77 6.64 16 41 H 0.15 2.24 7.86 -2.39 -0.02 2.22 16 42 H 0.15 2.18 8.00 -2.39 -0.02 2.16 16 43 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.17 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.07 0.87 7.67 -2.39 -0.02 0.86 16 46 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 47 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -87.38 386.54 2.32 -85.06 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.22 Total: 13.58 kcal Atomic # 6 Polarization: 37.45 SS G_CDS: 8.61 Total: 46.06 kcal Atomic # 7 Polarization: -129.40 SS G_CDS: -8.37 Total: -137.77 kcal Atomic # 8 Polarization: -54.22 SS G_CDS: -0.17 Total: -54.39 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -87.38 2.32 -85.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944790303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.601 kcal (2) G-P(sol) polarization free energy of solvation -87.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds