Wall clock time and date at job start Tue Mar 31 2020 21:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.69891 * 2 1 4 4 C 1.52762 * 109.50903 * 239.87689 * 2 1 3 5 5 C 1.53042 * 109.37765 * 185.70536 * 4 2 1 6 6 H 1.09002 * 109.46453 * 301.21644 * 5 4 2 7 7 N 1.46508 * 109.45494 * 181.26109 * 5 4 2 8 8 C 1.34777 * 119.99657 * 154.93350 * 7 5 4 9 9 O 1.21275 * 120.00390 * 359.97438 * 8 7 5 10 10 C 1.50702 * 119.99785 * 180.02562 * 8 7 5 11 11 N 1.46495 * 109.47078 * 180.02562 * 10 8 7 12 12 C 1.46414 * 119.53242 * 269.72580 * 11 10 8 13 13 C 1.53352 * 109.35237 * 144.05043 * 12 11 10 14 14 C 1.50799 * 109.08748 * 46.98911 * 13 12 11 15 15 O 1.21240 * 120.01622 * 145.63794 * 14 13 12 16 16 N 1.34554 * 119.97032 * 325.61685 * 14 13 12 17 17 C 1.34288 * 119.53984 * 89.99660 * 11 10 8 18 18 O 1.21532 * 119.21058 * 5.64703 * 17 11 10 19 19 C 1.53042 * 109.53952 * 61.24478 * 5 4 2 20 20 C 1.53187 * 109.30750 * 298.63063 * 19 5 4 21 21 N 1.46927 * 108.78119 * 54.63797 * 20 19 5 22 22 C 1.36936 * 120.63374 * 126.36298 * 21 20 19 23 23 H 1.08000 * 120.00026 * 212.72950 * 22 21 20 24 24 C 1.38813 * 119.99723 * 32.72983 * 22 21 20 25 25 N 1.31615 * 119.99557 * 197.66161 * 24 22 21 26 26 Si 1.86795 * 120.00060 * 17.66510 * 24 22 21 27 27 H 1.48503 * 109.47232 * 269.99407 * 26 24 22 28 28 H 1.48495 * 109.47327 * 29.99852 * 26 24 22 29 29 H 1.48506 * 109.47288 * 150.00007 * 26 24 22 30 30 H 1.09001 * 109.47285 * 299.64652 * 1 2 3 31 31 H 1.09002 * 109.46826 * 59.64845 * 1 2 3 32 32 H 1.09002 * 109.46923 * 179.64821 * 1 2 3 33 33 H 1.09000 * 109.56316 * 65.66946 * 4 2 1 34 34 H 1.08995 * 109.38970 * 305.63205 * 4 2 1 35 35 H 0.96993 * 119.99736 * 334.93269 * 7 5 4 36 36 H 1.09008 * 109.46857 * 299.99753 * 10 8 7 37 37 H 1.08996 * 109.47440 * 59.99668 * 10 8 7 38 38 H 1.09007 * 109.46431 * 264.18327 * 12 11 10 39 39 H 1.08999 * 109.46705 * 24.14720 * 12 11 10 40 40 H 1.09003 * 109.68784 * 287.03247 * 13 12 11 41 41 H 1.09001 * 109.43875 * 166.80114 * 13 12 11 42 42 H 0.97004 * 119.51250 * 184.41215 * 16 14 13 43 43 H 1.08999 * 109.49514 * 178.68060 * 19 5 4 44 44 H 1.08995 * 109.52105 * 58.59586 * 19 5 4 45 45 H 1.09001 * 109.59111 * 294.84181 * 20 19 5 46 46 H 1.09004 * 109.58393 * 174.42420 * 20 19 5 47 47 H 0.97000 * 120.00466 * 355.05810 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7226 -1.2455 5 6 3.5638 -0.8462 -1.1725 6 1 4.0058 0.1475 -1.0995 7 7 4.0578 -1.5123 -2.3803 8 6 5.3218 -1.3005 -2.7975 9 8 6.0500 -0.5582 -2.1734 10 6 5.8297 -1.9851 -4.0402 11 7 7.2214 -1.5946 -4.2787 12 6 7.5101 -0.4214 -5.1058 13 6 8.7386 0.3055 -4.5454 14 6 9.8231 -0.7038 -4.2642 15 8 10.9870 -0.4033 -4.4218 16 7 9.4985 -1.9380 -3.8377 17 6 8.2144 -2.3207 -3.7403 18 8 7.9450 -3.3485 -3.1504 19 6 3.9523 -1.6686 0.0584 20 6 3.4644 -0.9518 1.3211 21 7 2.0225 -0.6994 1.1946 22 6 1.1535 -1.1133 2.1686 23 1 0.1527 -1.4211 1.9042 24 6 1.5592 -1.1374 3.4960 25 7 0.8829 -1.8423 4.3780 26 14 3.0647 -0.1692 4.0302 27 1 4.2729 -1.0235 3.9044 28 1 3.2142 1.0298 3.1669 29 1 2.9040 0.2557 5.4440 30 1 -0.3634 0.5083 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3633 -1.0277 -0.0063 33 1 1.7632 -0.1567 -2.1349 34 1 1.5964 -1.7170 -1.2941 35 1 3.4752 -2.1056 -2.8796 36 1 5.7735 -3.0657 -3.9084 37 1 5.2181 -1.6908 -4.8930 38 1 7.7075 -0.7385 -6.1298 39 1 6.6529 0.2518 -5.0932 40 1 8.4715 0.8199 -3.6222 41 1 9.0962 1.0303 -5.2768 42 1 10.2021 -2.5610 -3.5974 43 1 5.0363 -1.7760 0.0968 44 1 3.4909 -2.6543 -0.0017 45 1 3.9928 -0.0048 1.4311 46 1 3.6503 -1.5796 2.1926 47 1 0.0613 -2.2867 4.1167 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947899950.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:11 Heat of formation + Delta-G solvation = -101.260484 kcal Electronic energy + Delta-G solvation = -30366.401725 eV Core-core repulsion = 26162.819617 eV Total energy + Delta-G solvation = -4203.582108 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.74526 -41.02494 -40.06885 -39.33806 -37.27360 -36.15318 -35.71504 -34.32823 -33.37006 -32.58941 -31.70395 -28.89057 -27.90623 -26.08387 -26.02591 -24.33580 -24.08839 -22.55562 -21.52728 -21.05939 -20.09551 -19.39517 -19.14096 -18.79894 -18.25590 -17.61595 -17.33795 -16.67987 -16.46824 -16.36637 -15.89271 -15.77694 -15.68248 -15.46148 -15.37455 -15.25310 -14.86801 -14.57428 -14.39185 -14.18583 -13.86468 -13.60188 -13.34671 -12.99943 -12.91662 -12.75143 -12.60242 -12.39297 -12.23002 -11.95565 -11.86998 -11.73294 -11.60339 -11.54536 -11.42173 -11.40263 -11.20280 -11.04965 -10.62840 -10.01647 -9.91543 -9.06129 -8.39063 -5.53087 0.61411 1.23611 1.40551 1.50698 1.64409 1.68720 1.93192 2.05593 2.41132 2.52304 3.10672 3.34357 3.37883 3.59395 3.75713 3.86510 3.94061 4.03962 4.12544 4.20350 4.23594 4.44145 4.45127 4.46642 4.55969 4.58501 4.64188 4.71612 4.83276 4.84186 4.92190 4.93032 4.99474 5.02813 5.07188 5.10169 5.20661 5.41378 5.44899 5.54244 5.55249 5.91700 6.24819 6.33362 6.40630 6.61545 6.94849 7.00714 7.30738 7.61713 8.13527 8.92435 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018160 B = 0.002718 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.515108 B =10300.259728 C =10957.614675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.160 3.840 3 H 0.034 0.966 4 C -0.119 4.119 5 C 0.164 3.836 6 H 0.071 0.929 7 N -0.708 5.708 8 C 0.489 3.511 9 O -0.578 6.578 10 C 0.112 3.888 11 N -0.596 5.596 12 C 0.110 3.890 13 C -0.154 4.154 14 C 0.526 3.474 15 O -0.540 6.540 16 N -0.675 5.675 17 C 0.711 3.289 18 O -0.596 6.596 19 C -0.131 4.131 20 C 0.125 3.875 21 N -0.616 5.616 22 C -0.312 4.312 23 H 0.050 0.950 24 C -0.070 4.070 25 N -0.964 5.964 26 Si 1.097 2.903 27 H -0.284 1.284 28 H -0.269 1.269 29 H -0.308 1.308 30 H 0.034 0.966 31 H 0.084 0.916 32 H 0.039 0.961 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.417 0.583 36 H 0.121 0.879 37 H 0.173 0.827 38 H 0.112 0.888 39 H 0.128 0.872 40 H 0.111 0.889 41 H 0.154 0.846 42 H 0.425 0.575 43 H 0.049 0.951 44 H 0.058 0.942 45 H 0.028 0.972 46 H 0.047 0.953 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.631 3.977 -29.131 30.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.054 3.946 3 H 0.052 0.948 4 C -0.158 4.158 5 C 0.058 3.942 6 H 0.089 0.911 7 N -0.360 5.360 8 C 0.275 3.725 9 O -0.457 6.457 10 C -0.014 4.014 11 N -0.331 5.331 12 C -0.011 4.011 13 C -0.193 4.193 14 C 0.316 3.684 15 O -0.415 6.415 16 N -0.342 5.342 17 C 0.413 3.587 18 O -0.473 6.473 19 C -0.171 4.171 20 C -0.001 4.001 21 N -0.342 5.342 22 C -0.442 4.442 23 H 0.068 0.932 24 C -0.265 4.265 25 N -0.608 5.608 26 Si 0.926 3.074 27 H -0.211 1.211 28 H -0.194 1.194 29 H -0.237 1.237 30 H 0.053 0.947 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.119 0.881 34 H 0.085 0.915 35 H 0.254 0.746 36 H 0.139 0.861 37 H 0.190 0.810 38 H 0.130 0.870 39 H 0.146 0.854 40 H 0.129 0.871 41 H 0.171 0.829 42 H 0.266 0.734 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.046 0.954 46 H 0.065 0.935 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 11.420 4.622 -27.295 29.946 hybrid contribution -0.945 -1.298 -0.122 1.610 sum 10.475 3.324 -27.417 29.537 Atomic orbital electron populations 1.21696 0.94573 1.00911 1.01129 1.20636 0.94282 0.93768 0.85903 0.94809 1.22109 0.92676 1.02091 0.98936 1.20605 0.94751 0.95542 0.83255 0.91124 1.45963 1.13606 1.48884 1.27596 1.21842 0.81635 0.81474 0.87504 1.90704 1.56804 1.39490 1.58664 1.21593 0.80850 1.02161 0.96787 1.46759 1.04624 1.30023 1.51709 1.22093 0.98774 0.85894 0.94353 1.22401 0.92862 0.97329 1.06751 1.21655 0.91076 0.82515 0.73115 1.90780 1.22245 1.78425 1.50057 1.44286 1.08625 1.17027 1.64262 1.15769 0.81027 0.83144 0.78793 1.90989 1.82445 1.26978 1.46938 1.22216 0.99302 0.99645 0.95927 1.21285 0.84847 0.97012 0.96939 1.44616 1.01906 1.66333 1.21324 1.20124 0.97210 1.39388 0.87495 0.93243 1.27169 1.06899 0.99799 0.92649 1.70999 1.17783 1.33580 1.38436 0.83301 0.73310 0.76470 0.74342 1.21122 1.19395 1.23691 0.94688 0.89756 0.94145 0.88061 0.91475 0.74567 0.86112 0.80980 0.87021 0.85418 0.87081 0.82865 0.73415 0.93206 0.92359 0.95419 0.93472 0.94126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 7.96 71.98 0.57 -3.62 16 2 C 0.16 5.62 3.48 44.83 0.16 5.78 16 3 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 4 C -0.12 -3.03 4.81 30.53 0.15 -2.89 16 5 C 0.16 4.48 2.42 45.02 0.11 4.59 16 6 H 0.07 2.17 7.57 -2.39 -0.02 2.16 16 7 N -0.71 -13.20 5.08 -442.38 -2.25 -15.45 16 8 C 0.49 9.79 7.86 87.66 0.69 10.48 16 9 O -0.58 -17.06 16.09 -3.01 -0.05 -17.10 16 10 C 0.11 1.19 5.84 85.63 0.50 1.69 16 11 N -0.60 -7.92 2.28 -844.98 -1.93 -9.85 16 12 C 0.11 0.55 6.60 86.51 0.57 1.12 16 13 C -0.15 -1.39 6.30 30.00 0.19 -1.20 16 14 C 0.53 9.06 7.76 87.72 0.68 9.74 16 15 O -0.54 -12.89 17.93 -2.91 -0.05 -12.94 16 16 N -0.67 -12.48 5.18 -441.66 -2.29 -14.76 16 17 C 0.71 14.91 8.22 179.34 1.47 16.38 16 18 O -0.60 -17.30 16.57 -3.82 -0.06 -17.36 16 19 C -0.13 -4.65 5.65 30.67 0.17 -4.48 16 20 C 0.12 5.45 4.21 86.36 0.36 5.82 16 21 N -0.62 -28.13 2.70 -676.02 -1.83 -29.95 16 22 C -0.31 -17.14 8.80 84.03 0.74 -16.40 16 23 H 0.05 2.89 6.52 -2.91 -0.02 2.87 16 24 C -0.07 -4.15 5.24 84.86 0.45 -3.71 16 25 N -0.96 -61.72 13.70 21.65 0.30 -61.42 16 26 Si 1.10 55.38 24.75 68.60 1.70 57.07 16 27 H -0.28 -13.70 6.61 99.48 0.66 -13.04 16 28 H -0.27 -12.66 6.80 99.48 0.68 -11.98 16 29 H -0.31 -15.85 7.11 99.48 0.71 -15.14 16 30 H 0.03 1.35 7.65 -2.39 -0.02 1.33 16 31 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.04 1.44 7.43 -2.39 -0.02 1.42 16 33 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.42 4.72 8.60 -92.71 -0.80 3.92 16 36 H 0.12 1.44 7.27 -2.38 -0.02 1.42 16 37 H 0.17 -0.11 8.06 -2.39 -0.02 -0.13 16 38 H 0.11 -0.04 8.14 -2.38 -0.02 -0.06 16 39 H 0.13 0.11 8.01 -2.39 -0.02 0.09 16 40 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.15 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.42 7.48 8.86 -92.71 -0.82 6.66 16 43 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.03 1.21 7.07 -2.39 -0.02 1.19 16 46 H 0.05 2.31 4.94 -2.38 -0.01 2.29 16 47 H 0.25 15.93 8.73 -92.71 -0.81 15.12 16 Total: -1.00 -87.48 373.92 -0.37 -87.85 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -0.72 Total: 10.63 kcal Atomic # 6 Polarization: 16.49 SS G_CDS: 6.81 Total: 23.30 kcal Atomic # 7 Polarization: -123.45 SS G_CDS: -7.99 Total: -131.44 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -0.16 Total: -47.41 kcal Atomic # 14 Polarization: 55.38 SS G_CDS: 1.70 Total: 57.07 kcal Total: -87.48 -0.37 -87.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947899950.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.412 kcal (2) G-P(sol) polarization free energy of solvation -87.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds