Wall clock time and date at job start Tue Mar 31 2020 21:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.69768 * 2 1 4 4 C 1.53191 * 109.58641 * 239.64935 * 2 1 3 5 5 C 1.53046 * 109.33879 * 185.59220 * 4 2 1 6 6 H 1.09004 * 109.45798 * 301.34388 * 5 4 2 7 7 N 1.46494 * 109.46030 * 181.36720 * 5 4 2 8 8 C 1.34778 * 120.00201 * 154.99838 * 7 5 4 9 9 O 1.21287 * 119.99325 * 0.02562 * 8 7 5 10 10 C 1.50694 * 120.00243 * 179.97438 * 8 7 5 11 11 N 1.46503 * 109.47298 * 179.97438 * 10 8 7 12 12 C 1.47310 * 126.69296 * 269.71569 * 11 10 8 13 13 C 1.51583 * 103.59244 * 179.97438 * 12 11 10 14 14 O 1.21233 * 127.15640 * 180.14811 * 13 12 11 15 15 N 1.34763 * 105.68349 * 0.32998 * 13 12 11 16 16 C 1.46502 * 124.17690 * 179.81563 * 15 13 12 17 17 C 1.33790 * 111.64678 * 359.78373 * 15 13 12 18 18 O 1.21541 * 123.76857 * 179.97438 * 17 15 13 19 19 C 1.53038 * 109.53632 * 61.34673 * 5 4 2 20 20 C 1.53191 * 109.31291 * 298.63263 * 19 5 4 21 21 N 1.46929 * 108.77642 * 54.64098 * 20 19 5 22 22 C 1.36933 * 120.63495 * 126.42991 * 21 20 19 23 23 H 1.08003 * 120.00098 * 209.00886 * 22 21 20 24 24 C 1.38814 * 120.00092 * 29.00384 * 22 21 20 25 25 N 1.31621 * 119.99524 * 15.02137 * 24 22 21 26 26 Si 1.86791 * 120.00198 * 195.01299 * 24 22 21 27 27 H 1.48510 * 109.47020 * 60.00441 * 26 24 22 28 28 H 1.48503 * 109.47385 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.47592 * 300.00251 * 26 24 22 30 30 H 1.08998 * 109.46924 * 180.35376 * 1 2 3 31 31 H 1.08998 * 109.47152 * 300.34878 * 1 2 3 32 32 H 1.08996 * 109.47326 * 60.35628 * 1 2 3 33 33 H 1.08998 * 109.49924 * 65.62655 * 4 2 1 34 34 H 1.08999 * 109.49902 * 305.55865 * 4 2 1 35 35 H 0.97005 * 120.00238 * 335.00396 * 7 5 4 36 36 H 1.08996 * 109.47137 * 300.00400 * 10 8 7 37 37 H 1.09003 * 109.47197 * 60.00471 * 10 8 7 38 38 H 1.09007 * 110.59513 * 298.55885 * 12 11 10 39 39 H 1.08996 * 110.59956 * 61.50121 * 12 11 10 40 40 H 1.09002 * 109.47188 * 269.96334 * 16 15 13 41 41 H 1.09002 * 109.47143 * 29.96196 * 16 15 13 42 42 H 1.09001 * 109.47337 * 149.95950 * 16 15 13 43 43 H 1.08999 * 109.49774 * 58.58563 * 19 5 4 44 44 H 1.09002 * 109.49559 * 178.65262 * 19 5 4 45 45 H 1.09000 * 109.58688 * 174.42290 * 20 19 5 46 46 H 1.08991 * 109.59212 * 294.84802 * 20 19 5 47 47 H 0.97005 * 119.99466 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2455 5 6 3.5676 -0.8485 -1.1706 6 1 4.0066 0.1467 -1.0998 7 7 4.0646 -1.5166 -2.3759 8 6 5.3288 -1.3036 -2.7918 9 8 6.0550 -0.5591 -2.1678 10 6 5.8403 -1.9913 -4.0313 11 7 7.2312 -1.5977 -4.2695 12 6 7.6972 -0.4554 -5.0744 13 6 9.2071 -0.5365 -4.9673 14 8 10.0181 0.2091 -5.4733 15 7 9.4603 -1.6122 -4.1961 16 6 10.8051 -2.0671 -3.8342 17 6 8.3320 -2.2131 -3.8013 18 8 8.3047 -3.2043 -3.0986 19 6 3.9569 -1.6663 0.0629 20 6 3.4658 -0.9471 1.3232 21 7 2.0233 -0.6992 1.1945 22 6 1.1547 -1.1115 2.1694 23 1 0.1367 -1.3656 1.9134 24 6 1.5826 -1.2030 3.4868 25 7 2.7063 -0.6252 3.8553 26 14 0.5635 -2.1458 4.7365 27 1 0.4328 -3.5601 4.3028 28 1 1.2325 -2.0937 6.0613 29 1 -0.7851 -1.5328 4.8392 30 1 -0.3633 -1.0276 0.0063 31 1 -0.3633 0.5192 0.8868 32 1 -0.3634 0.5083 -0.8931 33 1 1.7661 -0.1667 -2.1368 34 1 1.6026 -1.7250 -1.2918 35 1 3.4838 -2.1123 -2.8748 36 1 5.7860 -3.0715 -3.8961 37 1 5.2295 -1.7010 -4.8862 38 1 7.3791 -0.5620 -6.1116 39 1 7.3337 0.4828 -4.6553 40 1 11.1626 -2.7753 -4.5817 41 1 11.4791 -1.2115 -3.7926 42 1 10.7741 -2.5530 -2.8589 43 1 3.4979 -2.6532 0.0049 44 1 5.0412 -1.7711 0.1025 45 1 3.6526 -1.5719 2.1967 46 1 3.9915 0.0015 1.4310 47 1 3.0055 -0.6895 4.7758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947925389.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:30 Heat of formation + Delta-G solvation = -43.294661 kcal Electronic energy + Delta-G solvation = -30029.130636 eV Core-core repulsion = 25828.062115 eV Total energy + Delta-G solvation = -4201.068521 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.57824 -39.83700 -38.84231 -37.72106 -36.37766 -35.45687 -34.60061 -32.47238 -31.62069 -30.57226 -29.39663 -27.47384 -26.92770 -26.28686 -24.71650 -22.93989 -22.09592 -21.40613 -20.49388 -20.12584 -19.26897 -17.91360 -17.79887 -16.99767 -16.85852 -16.27513 -16.07612 -15.88559 -15.18520 -14.91091 -14.83510 -14.47673 -14.37603 -14.27141 -13.97177 -13.70701 -13.49887 -13.27090 -13.03198 -12.97994 -12.87705 -12.76713 -12.29407 -11.61669 -11.24975 -11.20352 -11.12013 -10.94497 -10.90963 -10.66249 -10.55762 -10.34843 -10.29660 -10.12472 -10.10030 -10.05302 -9.75544 -9.53791 -9.11504 -8.77087 -8.42637 -6.65204 -5.76822 -3.21188 1.31934 1.68440 2.52881 2.62339 2.71869 3.32185 3.38714 3.44670 3.45016 3.69894 4.30098 4.48996 4.57003 4.68548 4.77886 4.87133 4.91216 4.99513 5.20260 5.24293 5.31588 5.35038 5.41659 5.47066 5.56245 5.74234 5.94982 5.97895 6.12777 6.21232 6.28864 6.37935 6.39905 6.47985 6.61871 6.77507 6.79301 6.85300 7.00684 7.01918 7.07334 7.38390 7.57478 7.70484 7.78956 7.81851 8.26654 8.46960 9.22339 9.85991 10.42595 11.31706 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020482 B = 0.002417 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.753772 B =11580.347755 C =12281.385255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.026 0.974 4 C -0.133 4.133 5 C 0.152 3.848 6 H 0.081 0.919 7 N -0.721 5.721 8 C 0.488 3.512 9 O -0.529 6.529 10 C 0.133 3.867 11 N -0.609 5.609 12 C 0.065 3.935 13 C 0.526 3.474 14 O -0.474 6.474 15 N -0.579 5.579 16 C 0.088 3.912 17 C 0.706 3.294 18 O -0.535 6.535 19 C -0.147 4.147 20 C 0.175 3.825 21 N -0.587 5.587 22 C -0.252 4.252 23 H 0.070 0.930 24 C 0.002 3.998 25 N -0.903 5.903 26 Si 0.902 3.098 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.396 0.604 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.090 0.910 46 H 0.019 0.981 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.375 -2.551 -21.919 23.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.063 3.937 3 H 0.044 0.956 4 C -0.173 4.173 5 C 0.048 3.952 6 H 0.099 0.901 7 N -0.372 5.372 8 C 0.271 3.729 9 O -0.405 6.405 10 C 0.008 3.992 11 N -0.347 5.347 12 C -0.061 4.061 13 C 0.314 3.686 14 O -0.344 6.344 15 N -0.325 5.325 16 C -0.053 4.053 17 C 0.408 3.592 18 O -0.408 6.408 19 C -0.187 4.187 20 C 0.049 3.951 21 N -0.311 5.311 22 C -0.382 4.382 23 H 0.087 0.913 24 C -0.196 4.196 25 N -0.547 5.547 26 Si 0.731 3.269 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.209 1.209 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.229 0.771 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.109 0.891 46 H 0.037 0.963 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.362 -2.187 -21.117 22.818 hybrid contribution -0.707 -0.744 0.561 1.169 sum 7.656 -2.931 -20.556 22.131 Atomic orbital electron populations 1.21790 0.95741 1.01448 1.00301 1.20355 0.93068 0.93552 0.86680 0.95630 1.22379 0.93584 1.01674 0.99669 1.21061 0.94249 0.96684 0.83164 0.90128 1.46293 1.12907 1.48675 1.29297 1.21028 0.82504 0.82639 0.86723 1.90745 1.55879 1.37098 1.56742 1.21188 0.78818 1.01796 0.97424 1.46926 1.04858 1.29975 1.52954 1.22533 0.91483 0.93018 0.99027 1.20833 0.91387 0.79451 0.76927 1.90817 1.53983 1.43233 1.46348 1.46225 1.08965 1.28759 1.48527 1.21842 0.79284 1.01375 1.02754 1.15749 0.80515 0.82982 0.79969 1.91005 1.85314 1.25392 1.39100 1.22567 0.99766 0.99591 0.96784 1.20753 0.83155 0.97281 0.93952 1.44165 1.03003 1.64904 1.19012 1.19122 0.94786 1.38048 0.86246 0.91256 1.25103 0.97808 0.99706 0.97012 1.70008 1.23247 1.44419 1.17017 0.86391 0.79603 0.80126 0.80736 1.21082 1.21687 1.20926 0.92739 0.91876 0.94312 0.92698 0.91749 0.77065 0.86219 0.86417 0.85771 0.85600 0.90901 0.89354 0.89064 0.92628 0.92942 0.89143 0.96266 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 7.95 37.16 0.30 -2.10 16 2 C 0.17 3.37 3.50 -67.59 -0.24 3.13 16 3 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -2.08 4.84 -26.61 -0.13 -2.21 16 5 C 0.15 2.49 2.42 -67.89 -0.16 2.33 16 6 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 7 N -0.72 -8.77 5.08 -53.77 -0.27 -9.05 16 8 C 0.49 6.25 7.86 -10.99 -0.09 6.17 16 9 O -0.53 -9.38 16.09 5.55 0.09 -9.29 16 10 C 0.13 1.07 6.63 -5.19 -0.03 1.04 16 11 N -0.61 -5.92 2.51 -181.40 -0.45 -6.38 16 12 C 0.07 0.47 7.66 -4.32 -0.03 0.43 16 13 C 0.53 5.16 8.31 -10.56 -0.09 5.07 16 14 O -0.47 -5.67 17.76 5.60 0.10 -5.58 16 15 N -0.58 -6.11 3.00 -128.17 -0.39 -6.49 16 16 C 0.09 0.72 10.73 59.85 0.64 1.36 16 17 C 0.71 8.81 8.31 -88.02 -0.73 8.07 16 18 O -0.54 -8.53 17.15 5.33 0.09 -8.44 16 19 C -0.15 -2.90 5.65 -26.61 -0.15 -3.05 16 20 C 0.17 4.22 5.29 -3.71 -0.02 4.20 16 21 N -0.59 -14.17 2.99 -164.77 -0.49 -14.66 16 22 C -0.25 -6.65 8.61 -15.06 -0.13 -6.78 16 23 H 0.07 1.76 6.20 -52.48 -0.33 1.44 16 24 C 0.00 0.07 4.96 -17.43 -0.09 -0.02 16 25 N -0.90 -26.19 11.14 55.49 0.62 -25.57 16 26 Si 0.90 21.50 29.58 -169.99 -5.03 16.47 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 29 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 30 H 0.05 0.97 7.41 -51.93 -0.38 0.58 16 31 H 0.06 1.23 7.66 -51.93 -0.40 0.83 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.40 3.41 8.60 -40.82 -0.35 3.05 16 36 H 0.12 0.88 8.03 -51.93 -0.42 0.46 16 37 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.13 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.63 8.00 -51.93 -0.42 0.22 16 42 H 0.09 0.78 7.86 -51.93 -0.41 0.37 16 43 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.09 2.46 6.06 -51.93 -0.31 2.14 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 LS Contribution 384.60 15.07 5.80 5.80 Total: -1.00 -36.58 384.60 -8.08 -44.66 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.19 Total: 0.88 kcal Atomic # 6 Polarization: 18.60 SS G_CDS: -0.95 Total: 17.65 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -0.99 Total: -62.15 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: 0.28 Total: -23.31 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.58 -8.08 -44.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947925389.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.368 kcal (2) G-P(sol) polarization free energy of solvation -36.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds