Wall clock time and date at job start Tue Mar 31 2020 21:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.69768 * 2 1 4 4 C 1.53191 * 109.58641 * 239.64935 * 2 1 3 5 5 C 1.53046 * 109.33879 * 185.59220 * 4 2 1 6 6 H 1.09004 * 109.45798 * 301.34388 * 5 4 2 7 7 N 1.46494 * 109.46030 * 181.36720 * 5 4 2 8 8 C 1.34778 * 120.00201 * 154.99838 * 7 5 4 9 9 O 1.21287 * 119.99325 * 0.02562 * 8 7 5 10 10 C 1.50694 * 120.00243 * 179.97438 * 8 7 5 11 11 N 1.46503 * 109.47298 * 179.97438 * 10 8 7 12 12 C 1.47310 * 126.69296 * 269.71569 * 11 10 8 13 13 C 1.51583 * 103.59244 * 179.97438 * 12 11 10 14 14 O 1.21233 * 127.15640 * 180.14811 * 13 12 11 15 15 N 1.34763 * 105.68349 * 0.32998 * 13 12 11 16 16 C 1.46502 * 124.17690 * 179.81563 * 15 13 12 17 17 C 1.33790 * 111.64678 * 359.78373 * 15 13 12 18 18 O 1.21541 * 123.76857 * 179.97438 * 17 15 13 19 19 C 1.53038 * 109.53632 * 61.34673 * 5 4 2 20 20 C 1.53191 * 109.31291 * 298.63263 * 19 5 4 21 21 N 1.46929 * 108.77642 * 54.64098 * 20 19 5 22 22 C 1.36933 * 120.63495 * 126.42991 * 21 20 19 23 23 H 1.08003 * 120.00098 * 209.00886 * 22 21 20 24 24 C 1.38814 * 120.00092 * 29.00384 * 22 21 20 25 25 N 1.31621 * 119.99524 * 15.02137 * 24 22 21 26 26 Si 1.86791 * 120.00198 * 195.01299 * 24 22 21 27 27 H 1.48510 * 109.47020 * 60.00441 * 26 24 22 28 28 H 1.48503 * 109.47385 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.47592 * 300.00251 * 26 24 22 30 30 H 1.08998 * 109.46924 * 180.35376 * 1 2 3 31 31 H 1.08998 * 109.47152 * 300.34878 * 1 2 3 32 32 H 1.08996 * 109.47326 * 60.35628 * 1 2 3 33 33 H 1.08998 * 109.49924 * 65.62655 * 4 2 1 34 34 H 1.08999 * 109.49902 * 305.55865 * 4 2 1 35 35 H 0.97005 * 120.00238 * 335.00396 * 7 5 4 36 36 H 1.08996 * 109.47137 * 300.00400 * 10 8 7 37 37 H 1.09003 * 109.47197 * 60.00471 * 10 8 7 38 38 H 1.09007 * 110.59513 * 298.55885 * 12 11 10 39 39 H 1.08996 * 110.59956 * 61.50121 * 12 11 10 40 40 H 1.09002 * 109.47188 * 269.96334 * 16 15 13 41 41 H 1.09002 * 109.47143 * 29.96196 * 16 15 13 42 42 H 1.09001 * 109.47337 * 149.95950 * 16 15 13 43 43 H 1.08999 * 109.49774 * 58.58563 * 19 5 4 44 44 H 1.09002 * 109.49559 * 178.65262 * 19 5 4 45 45 H 1.09000 * 109.58688 * 174.42290 * 20 19 5 46 46 H 1.08991 * 109.59212 * 294.84802 * 20 19 5 47 47 H 0.97005 * 119.99466 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2455 5 6 3.5676 -0.8485 -1.1706 6 1 4.0066 0.1467 -1.0998 7 7 4.0646 -1.5166 -2.3759 8 6 5.3288 -1.3036 -2.7918 9 8 6.0550 -0.5591 -2.1678 10 6 5.8403 -1.9913 -4.0313 11 7 7.2312 -1.5977 -4.2695 12 6 7.6972 -0.4554 -5.0744 13 6 9.2071 -0.5365 -4.9673 14 8 10.0181 0.2091 -5.4733 15 7 9.4603 -1.6122 -4.1961 16 6 10.8051 -2.0671 -3.8342 17 6 8.3320 -2.2131 -3.8013 18 8 8.3047 -3.2043 -3.0986 19 6 3.9569 -1.6663 0.0629 20 6 3.4658 -0.9471 1.3232 21 7 2.0233 -0.6992 1.1945 22 6 1.1547 -1.1115 2.1694 23 1 0.1367 -1.3656 1.9134 24 6 1.5826 -1.2030 3.4868 25 7 2.7063 -0.6252 3.8553 26 14 0.5635 -2.1458 4.7365 27 1 0.4328 -3.5601 4.3028 28 1 1.2325 -2.0937 6.0613 29 1 -0.7851 -1.5328 4.8392 30 1 -0.3633 -1.0276 0.0063 31 1 -0.3633 0.5192 0.8868 32 1 -0.3634 0.5083 -0.8931 33 1 1.7661 -0.1667 -2.1368 34 1 1.6026 -1.7250 -1.2918 35 1 3.4838 -2.1123 -2.8748 36 1 5.7860 -3.0715 -3.8961 37 1 5.2295 -1.7010 -4.8862 38 1 7.3791 -0.5620 -6.1116 39 1 7.3337 0.4828 -4.6553 40 1 11.1626 -2.7753 -4.5817 41 1 11.4791 -1.2115 -3.7926 42 1 10.7741 -2.5530 -2.8589 43 1 3.4979 -2.6532 0.0049 44 1 5.0412 -1.7711 0.1025 45 1 3.6526 -1.5719 2.1967 46 1 3.9915 0.0015 1.4310 47 1 3.0055 -0.6895 4.7758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947925389.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:29 Heat of formation + Delta-G solvation = -70.613763 kcal Electronic energy + Delta-G solvation = -30030.315281 eV Core-core repulsion = 25828.062115 eV Total energy + Delta-G solvation = -4202.253166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.37164 -40.97015 -39.76976 -39.20665 -37.30359 -36.33534 -35.95223 -34.22698 -33.07416 -31.78862 -30.75986 -28.20943 -28.09434 -27.49433 -26.48714 -23.98805 -23.53002 -22.65389 -21.58358 -21.32123 -20.77416 -18.84320 -18.59816 -18.26389 -17.77975 -17.66668 -17.26323 -16.83873 -16.75608 -15.98698 -15.79856 -15.70810 -15.53929 -15.32972 -15.15047 -15.04094 -14.87371 -14.55850 -14.38601 -14.31114 -13.70148 -13.57324 -13.32265 -13.12645 -12.93666 -12.71610 -12.65506 -12.59419 -12.34897 -12.11736 -12.08590 -11.84310 -11.70609 -11.48972 -11.42769 -11.38666 -11.10165 -10.93642 -10.54369 -10.03619 -9.96290 -8.64819 -7.83398 -5.29995 0.53301 0.95434 1.47180 1.49667 1.55862 1.62786 1.80394 1.91173 2.36718 2.52922 3.00607 3.32840 3.59007 3.67451 3.77058 3.92257 4.08301 4.18993 4.25012 4.29986 4.35056 4.38009 4.38798 4.40792 4.46855 4.63149 4.67819 4.73244 4.76278 4.81190 4.86612 4.98356 5.09860 5.13197 5.17370 5.23581 5.40086 5.51202 5.57772 5.60192 5.72046 5.72847 5.97798 6.26635 6.43128 6.62294 6.92197 7.17129 7.32792 7.89813 8.42023 9.23718 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020482 B = 0.002417 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.753772 B =11580.347755 C =12281.385255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.157 3.843 3 H 0.009 0.991 4 C -0.115 4.115 5 C 0.164 3.836 6 H 0.054 0.946 7 N -0.705 5.705 8 C 0.483 3.517 9 O -0.585 6.585 10 C 0.139 3.861 11 N -0.606 5.606 12 C 0.072 3.928 13 C 0.524 3.476 14 O -0.500 6.500 15 N -0.584 5.584 16 C 0.082 3.918 17 C 0.697 3.303 18 O -0.581 6.581 19 C -0.131 4.131 20 C 0.184 3.816 21 N -0.603 5.603 22 C -0.247 4.247 23 H 0.082 0.918 24 C -0.060 4.060 25 N -0.943 5.943 26 Si 0.964 3.036 27 H -0.277 1.277 28 H -0.302 1.302 29 H -0.272 1.272 30 H 0.056 0.944 31 H 0.036 0.964 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.420 0.580 36 H 0.132 0.868 37 H 0.180 0.820 38 H 0.175 0.825 39 H 0.132 0.868 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.061 0.939 44 H 0.034 0.966 45 H 0.052 0.948 46 H -0.017 1.017 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.145 -3.353 -25.847 26.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.051 3.949 3 H 0.027 0.973 4 C -0.155 4.155 5 C 0.059 3.941 6 H 0.072 0.928 7 N -0.357 5.357 8 C 0.269 3.731 9 O -0.465 6.465 10 C 0.015 3.985 11 N -0.343 5.343 12 C -0.052 4.052 13 C 0.314 3.686 14 O -0.372 6.372 15 N -0.330 5.330 16 C -0.059 4.059 17 C 0.399 3.601 18 O -0.457 6.457 19 C -0.171 4.171 20 C 0.057 3.943 21 N -0.327 5.327 22 C -0.377 4.377 23 H 0.100 0.900 24 C -0.254 4.254 25 N -0.590 5.590 26 Si 0.793 3.207 27 H -0.203 1.203 28 H -0.229 1.229 29 H -0.198 1.198 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.257 0.743 36 H 0.150 0.850 37 H 0.198 0.802 38 H 0.192 0.808 39 H 0.149 0.851 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.080 0.920 44 H 0.053 0.947 45 H 0.070 0.930 46 H 0.001 0.999 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.076 -2.997 -25.134 26.031 hybrid contribution 0.022 -0.419 1.754 1.804 sum 6.098 -3.416 -23.380 24.402 Atomic orbital electron populations 1.21711 0.93791 1.01751 1.01157 1.20687 0.94769 0.92872 0.86591 0.97295 1.22167 0.92137 1.02382 0.98777 1.20590 0.95123 0.94961 0.83447 0.92795 1.45947 1.13422 1.48581 1.27767 1.22001 0.81807 0.81695 0.87611 1.90741 1.57231 1.39710 1.58772 1.21498 0.78373 1.01840 0.96819 1.47142 1.04872 1.30034 1.52220 1.22791 0.89020 0.92176 1.01252 1.21288 0.92664 0.78605 0.76081 1.90807 1.55084 1.43898 1.47400 1.46391 1.09248 1.28938 1.48402 1.21989 0.78839 1.02108 1.02917 1.16049 0.81580 0.82814 0.79676 1.90966 1.86069 1.27496 1.41186 1.22296 0.98415 0.99751 0.96623 1.20419 0.83808 0.95216 0.94875 1.44428 1.02457 1.65674 1.20143 1.19545 0.95349 1.36235 0.86620 0.90001 1.25897 0.99090 1.01308 0.99147 1.70202 1.25370 1.46740 1.16716 0.85377 0.78339 0.79091 0.77888 1.20306 1.22869 1.19780 0.92535 0.94449 0.90144 0.88536 0.90422 0.74253 0.84982 0.80247 0.80780 0.85058 0.89056 0.88619 0.90044 0.92024 0.94672 0.92952 0.99889 0.94540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 7.95 71.98 0.57 -3.58 16 2 C 0.16 5.98 3.50 44.97 0.16 6.13 16 3 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 4 C -0.12 -3.20 4.84 30.67 0.15 -3.05 16 5 C 0.16 5.16 2.42 45.02 0.11 5.27 16 6 H 0.05 2.03 7.58 -2.38 -0.02 2.01 16 7 N -0.70 -14.87 5.08 -442.40 -2.25 -17.11 16 8 C 0.48 11.18 7.86 87.65 0.69 11.87 16 9 O -0.59 -20.55 16.09 -3.05 -0.05 -20.60 16 10 C 0.14 1.64 6.63 85.63 0.57 2.20 16 11 N -0.61 -10.05 2.51 -846.24 -2.12 -12.17 16 12 C 0.07 0.78 7.66 85.76 0.66 1.44 16 13 C 0.52 9.49 8.31 87.94 0.73 10.22 16 14 O -0.50 -11.46 17.76 -2.88 -0.05 -11.51 16 15 N -0.58 -11.97 3.00 -796.65 -2.39 -14.36 16 16 C 0.08 1.35 10.73 127.77 1.37 2.72 16 17 C 0.70 16.76 8.31 179.44 1.49 18.25 16 18 O -0.58 -18.61 17.15 -3.84 -0.07 -18.67 16 19 C -0.13 -5.25 5.65 30.67 0.17 -5.07 16 20 C 0.18 9.34 5.29 86.36 0.46 9.79 16 21 N -0.60 -29.53 2.99 -675.21 -2.02 -31.55 16 22 C -0.25 -13.12 8.61 84.03 0.72 -12.40 16 23 H 0.08 4.08 6.20 -2.91 -0.02 4.06 16 24 C -0.06 -3.37 4.96 84.86 0.42 -2.95 16 25 N -0.94 -57.61 11.14 21.65 0.24 -57.36 16 26 Si 0.96 45.08 29.58 68.60 2.03 47.11 16 27 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 28 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 29 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 30 H 0.06 1.82 7.41 -2.39 -0.02 1.81 16 31 H 0.04 1.39 7.66 -2.39 -0.02 1.38 16 32 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.42 5.08 8.60 -92.70 -0.80 4.28 16 36 H 0.13 1.38 8.03 -2.39 -0.02 1.36 16 37 H 0.18 -0.04 8.14 -2.39 -0.02 -0.06 16 38 H 0.18 0.22 8.14 -2.38 -0.02 0.20 16 39 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.10 1.39 8.00 -2.39 -0.02 1.37 16 42 H 0.08 1.48 7.86 -2.39 -0.02 1.46 16 43 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.05 3.04 6.06 -2.39 -0.01 3.02 16 46 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 47 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 Total: -1.00 -87.68 384.60 1.79 -85.89 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.20 Total: 9.51 kcal Atomic # 6 Polarization: 32.56 SS G_CDS: 8.27 Total: 40.83 kcal Atomic # 7 Polarization: -124.02 SS G_CDS: -8.54 Total: -132.56 kcal Atomic # 8 Polarization: -50.61 SS G_CDS: -0.17 Total: -50.78 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -87.68 1.79 -85.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947925389.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.281 kcal (2) G-P(sol) polarization free energy of solvation -87.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds