Wall clock time and date at job start Tue Mar 31 2020 21:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.58221 * 2 1 4 4 C 1.53194 * 109.58273 * 120.44127 * 2 1 3 5 5 C 1.53042 * 109.31097 * 174.43840 * 4 2 1 6 6 H 1.09004 * 109.46050 * 58.62727 * 5 4 2 7 7 N 1.46501 * 109.45916 * 178.59888 * 5 4 2 8 8 C 1.34776 * 119.99494 * 205.02844 * 7 5 4 9 9 O 1.21278 * 120.00671 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99440 * 179.97438 * 8 7 5 11 11 N 1.46507 * 109.47161 * 179.97438 * 10 8 7 12 12 C 1.47312 * 126.68833 * 270.02199 * 11 10 8 13 13 C 1.51590 * 103.58951 * 179.76825 * 12 11 10 14 14 O 1.21232 * 127.15738 * 180.24666 * 13 12 11 15 15 N 1.34771 * 105.68412 * 0.31564 * 13 12 11 16 16 C 1.46499 * 124.17700 * 179.97438 * 15 13 12 17 17 C 1.33786 * 111.64235 * 359.66206 * 15 13 12 18 18 O 1.21538 * 123.76791 * 180.22602 * 17 15 13 19 19 C 1.53036 * 109.52570 * 298.61551 * 5 4 2 20 20 C 1.53187 * 109.31691 * 61.36891 * 19 5 4 21 21 N 1.46925 * 109.58612 * 239.71647 * 2 1 3 22 22 C 1.36934 * 120.63464 * 6.62454 * 21 2 1 23 23 H 1.08005 * 119.99708 * 331.54436 * 22 21 2 24 24 C 1.38814 * 119.99983 * 151.54205 * 22 21 2 25 25 N 1.31621 * 119.99884 * 160.53498 * 24 22 21 26 26 Si 1.86799 * 120.00122 * 340.53332 * 24 22 21 27 27 H 1.48499 * 109.47095 * 94.84060 * 26 24 22 28 28 H 1.48494 * 109.47240 * 214.84429 * 26 24 22 29 29 H 1.48502 * 109.47226 * 334.84152 * 26 24 22 30 30 H 1.08997 * 109.46979 * 180.28107 * 1 2 3 31 31 H 1.08993 * 109.47559 * 300.28675 * 1 2 3 32 32 H 1.09005 * 109.46900 * 60.28798 * 1 2 3 33 33 H 1.08991 * 109.50982 * 54.48100 * 4 2 1 34 34 H 1.09001 * 109.48277 * 294.37653 * 4 2 1 35 35 H 0.96993 * 120.00128 * 25.02357 * 7 5 4 36 36 H 1.09005 * 109.47079 * 60.00254 * 10 8 7 37 37 H 1.08997 * 109.47613 * 300.00040 * 10 8 7 38 38 H 1.09003 * 110.60114 * 298.48256 * 12 11 10 39 39 H 1.08996 * 110.60012 * 61.28149 * 12 11 10 40 40 H 1.08995 * 109.46999 * 269.70726 * 16 15 13 41 41 H 1.08994 * 109.47032 * 149.70108 * 16 15 13 42 42 H 1.09007 * 109.46644 * 29.70374 * 16 15 13 43 43 H 1.09001 * 109.49746 * 181.32332 * 19 5 4 44 44 H 1.09005 * 109.49780 * 301.41567 * 19 5 4 45 45 H 1.09000 * 109.58664 * 65.15622 * 20 19 5 46 46 H 1.08998 * 109.59153 * 185.57836 * 20 19 5 47 47 H 0.96993 * 119.99796 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7313 1.2444 5 6 3.5675 -0.8494 1.1692 6 1 4.0059 0.1461 1.0995 7 7 4.0651 -1.5187 2.3736 8 6 5.3291 -1.3049 2.7897 9 8 6.0543 -0.5581 2.1674 10 6 5.8408 -1.9929 4.0290 11 7 7.2318 -1.5993 4.2670 12 6 8.4372 -2.2717 3.7522 13 6 9.5747 -1.4361 4.3050 14 8 10.7622 -1.6125 4.1361 15 7 8.9915 -0.4571 5.0246 16 6 9.7273 0.5871 5.7418 17 6 7.6573 -0.5528 4.9975 18 8 6.9129 0.2194 5.5690 19 6 3.9569 -1.6655 -0.0655 20 6 3.4651 -0.9453 -1.3248 21 7 2.0226 -0.6980 -1.1953 22 6 1.1538 -1.1100 -2.1704 23 1 0.1334 -1.3559 -1.9157 24 6 1.5846 -1.2116 -3.4861 25 7 0.9112 -1.9483 -4.3440 26 14 3.1200 -0.3026 -4.0390 27 1 4.2910 -1.2119 -3.9544 28 1 2.9473 0.1532 -5.4416 29 1 3.3423 0.8737 -3.1602 30 1 -0.3633 -1.0276 0.0050 31 1 -0.3634 0.5182 0.8873 32 1 -0.3633 0.5094 -0.8926 33 1 1.6032 -1.7273 1.2889 34 1 1.7657 -0.1699 2.1365 35 1 3.4850 -2.1156 2.8715 36 1 5.7875 -3.0731 3.8932 37 1 5.2297 -1.7036 4.8839 38 1 8.4936 -3.2950 4.1235 39 1 8.4474 -2.2592 2.6624 40 1 9.9362 0.2518 6.7577 41 1 9.1274 1.4965 5.7754 42 1 10.6658 0.7898 5.2258 43 1 5.0412 -1.7693 -0.1058 44 1 3.4984 -2.6528 -0.0085 45 1 3.9903 0.0038 -1.4316 46 1 3.6519 -1.5689 -2.1990 47 1 1.2124 -2.0196 -5.2632 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947925391.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:39 Heat of formation + Delta-G solvation = -66.897724 kcal Electronic energy + Delta-G solvation = -30114.323104 eV Core-core repulsion = 25912.231077 eV Total energy + Delta-G solvation = -4202.092027 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.37983 -41.03256 -39.81340 -39.37220 -37.30766 -36.37391 -35.98704 -34.24995 -33.34536 -32.23505 -30.94050 -28.28863 -28.13457 -27.51992 -26.30220 -24.37021 -23.71803 -22.63893 -21.62738 -21.38335 -20.83323 -18.86254 -18.61035 -18.38566 -17.82011 -17.69460 -17.46493 -16.81854 -16.78269 -16.37365 -16.04593 -15.75415 -15.42442 -15.35821 -15.21409 -15.08403 -14.86651 -14.79217 -14.44291 -14.30585 -13.90165 -13.70739 -13.56866 -13.49465 -13.14335 -12.87791 -12.73923 -12.60767 -12.25203 -12.09578 -12.01513 -11.88421 -11.71889 -11.52381 -11.43881 -11.39367 -11.17104 -10.94304 -10.73914 -10.04012 -10.01192 -8.90421 -8.13191 -5.44443 0.52170 0.94880 1.26992 1.39202 1.46106 1.61786 1.77952 1.89613 2.33358 2.41810 2.99733 3.06771 3.29777 3.66377 3.72069 3.84720 3.95451 4.18150 4.21379 4.22758 4.25212 4.34003 4.37619 4.39092 4.46436 4.46647 4.56769 4.63801 4.68053 4.72795 4.80300 4.83417 4.94583 5.02717 5.06403 5.09494 5.21396 5.24267 5.47924 5.53023 5.57920 5.92969 5.96756 6.21421 6.25277 6.59775 6.91480 6.94479 7.29399 7.66469 8.07261 9.06181 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019086 B = 0.002593 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.661355 B =10797.475234 C =11579.640663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.162 3.838 3 H 0.028 0.972 4 C -0.120 4.120 5 C 0.160 3.840 6 H 0.057 0.943 7 N -0.705 5.705 8 C 0.485 3.515 9 O -0.583 6.583 10 C 0.137 3.863 11 N -0.606 5.606 12 C 0.070 3.930 13 C 0.524 3.476 14 O -0.500 6.500 15 N -0.584 5.584 16 C 0.082 3.918 17 C 0.699 3.301 18 O -0.578 6.578 19 C -0.126 4.126 20 C 0.125 3.875 21 N -0.615 5.615 22 C -0.231 4.231 23 H 0.075 0.925 24 C -0.033 4.033 25 N -0.956 5.956 26 Si 0.930 3.070 27 H -0.283 1.283 28 H -0.314 1.314 29 H -0.269 1.269 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.420 0.580 36 H 0.174 0.826 37 H 0.138 0.862 38 H 0.172 0.828 39 H 0.130 0.870 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.017 0.983 46 H 0.049 0.951 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.554 -3.567 24.870 28.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.057 3.943 3 H 0.046 0.954 4 C -0.159 4.159 5 C 0.055 3.945 6 H 0.075 0.925 7 N -0.357 5.357 8 C 0.271 3.729 9 O -0.462 6.462 10 C 0.013 3.987 11 N -0.342 5.342 12 C -0.055 4.055 13 C 0.314 3.686 14 O -0.372 6.372 15 N -0.329 5.329 16 C -0.058 4.058 17 C 0.401 3.599 18 O -0.454 6.454 19 C -0.166 4.166 20 C -0.001 4.001 21 N -0.340 5.340 22 C -0.360 4.360 23 H 0.093 0.907 24 C -0.227 4.227 25 N -0.603 5.603 26 Si 0.761 3.239 27 H -0.211 1.211 28 H -0.243 1.243 29 H -0.194 1.194 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.258 0.742 36 H 0.191 0.809 37 H 0.155 0.845 38 H 0.189 0.811 39 H 0.147 0.853 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.113 0.887 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.035 0.965 46 H 0.067 0.933 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 13.209 -2.737 24.552 28.014 hybrid contribution 0.498 0.593 -1.204 1.431 sum 13.707 -2.144 23.349 27.159 Atomic orbital electron populations 1.21736 0.94038 1.01634 1.01265 1.20696 0.94670 0.93368 0.85597 0.95416 1.22185 0.92665 1.02541 0.98552 1.20614 0.94779 0.95324 0.83771 0.92460 1.45921 1.13404 1.48546 1.27864 1.21937 0.81964 0.81754 0.87220 1.90732 1.57625 1.39052 1.58836 1.21503 0.78384 1.03087 0.95724 1.47142 1.06963 1.28892 1.51232 1.22767 0.79807 0.99624 1.03257 1.21252 0.89784 0.80873 0.76703 1.90812 1.16089 1.71386 1.58937 1.46389 1.07710 1.30064 1.48783 1.21994 0.96854 0.89460 0.97524 1.15993 0.81881 0.81931 0.80074 1.90952 1.57625 1.45863 1.50999 1.22185 0.99819 0.99874 0.94714 1.21252 0.84724 0.96803 0.97344 1.44675 1.01945 1.66429 1.20957 1.18958 0.95247 1.35440 0.86377 0.90739 1.25796 1.00145 1.00338 0.96418 1.69914 1.43400 1.41904 1.05086 0.86157 0.81302 0.80455 0.75953 1.21060 1.24316 1.19383 0.93121 0.90034 0.94315 0.90244 0.88855 0.74195 0.80886 0.84452 0.81103 0.85282 0.89125 0.89736 0.88749 0.92364 0.90978 0.96495 0.93260 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 7.94 71.98 0.57 -3.68 16 2 C 0.16 5.72 3.50 44.98 0.16 5.88 16 3 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.12 -3.10 4.84 30.67 0.15 -2.95 16 5 C 0.16 4.40 2.42 45.02 0.11 4.51 16 6 H 0.06 1.91 7.58 -2.38 -0.02 1.89 16 7 N -0.70 -12.79 5.08 -442.40 -2.25 -15.04 16 8 C 0.49 9.84 7.86 87.66 0.69 10.53 16 9 O -0.58 -18.37 16.09 -3.02 -0.05 -18.42 16 10 C 0.14 1.36 6.63 85.63 0.57 1.92 16 11 N -0.61 -8.99 2.51 -846.21 -2.12 -11.11 16 12 C 0.07 0.73 7.66 85.76 0.66 1.38 16 13 C 0.52 8.99 8.32 87.94 0.73 9.72 16 14 O -0.50 -11.18 17.75 -2.88 -0.05 -11.23 16 15 N -0.58 -10.84 3.00 -796.66 -2.39 -13.24 16 16 C 0.08 1.17 10.73 127.77 1.37 2.54 16 17 C 0.70 15.04 8.31 179.44 1.49 16.53 16 18 O -0.58 -16.45 17.15 -3.83 -0.07 -16.52 16 19 C -0.13 -4.13 5.65 30.67 0.17 -3.96 16 20 C 0.12 5.32 4.19 86.36 0.36 5.68 16 21 N -0.61 -27.55 2.76 -675.23 -1.86 -29.41 16 22 C -0.23 -12.39 9.06 84.03 0.76 -11.63 16 23 H 0.08 4.23 6.37 -2.91 -0.02 4.21 16 24 C -0.03 -1.88 5.24 84.86 0.45 -1.43 16 25 N -0.96 -59.21 13.97 21.65 0.30 -58.90 16 26 Si 0.93 47.49 24.35 68.60 1.67 49.16 16 27 H -0.28 -13.95 6.72 99.48 0.67 -13.28 16 28 H -0.31 -16.38 7.11 99.48 0.71 -15.67 16 29 H -0.27 -13.47 6.44 99.48 0.64 -12.83 16 30 H 0.05 1.73 7.45 -2.39 -0.02 1.72 16 31 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.04 1.46 7.61 -2.38 -0.02 1.44 16 33 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.42 4.16 8.60 -92.71 -0.80 3.36 16 36 H 0.17 -0.08 8.14 -2.38 -0.02 -0.10 16 37 H 0.14 1.02 8.03 -2.39 -0.02 1.01 16 38 H 0.17 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.08 1.29 7.86 -2.39 -0.02 1.28 16 42 H 0.09 1.20 8.00 -2.38 -0.02 1.18 16 43 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 45 H 0.02 0.76 6.95 -2.39 -0.02 0.74 16 46 H 0.05 2.34 4.61 -2.39 -0.01 2.33 16 47 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -85.73 378.06 1.52 -84.22 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 0.10 Total: 5.45 kcal Atomic # 6 Polarization: 26.81 SS G_CDS: 8.23 Total: 35.04 kcal Atomic # 7 Polarization: -119.38 SS G_CDS: -8.32 Total: -127.70 kcal Atomic # 8 Polarization: -46.00 SS G_CDS: -0.17 Total: -46.17 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 1.67 Total: 49.16 kcal Total: -85.73 1.52 -84.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947925391.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.320 kcal (2) G-P(sol) polarization free energy of solvation -85.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds