Wall clock time and date at job start Tue Mar 31 2020 21:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.58626 * 2 1 4 4 C 1.53204 * 109.58411 * 120.27867 * 2 1 3 5 5 C 1.53039 * 109.30716 * 174.42134 * 4 2 1 6 6 H 1.09001 * 109.46004 * 58.64492 * 5 4 2 7 7 N 1.46501 * 109.45615 * 178.61650 * 5 4 2 8 8 C 1.34780 * 120.00168 * 204.72626 * 7 5 4 9 9 O 1.21286 * 119.99650 * 0.27321 * 8 7 5 10 10 C 1.50694 * 120.00240 * 180.27454 * 8 7 5 11 11 N 1.46502 * 109.47406 * 180.02562 * 10 8 7 12 12 C 1.34774 * 124.17313 * 269.70178 * 11 10 8 13 13 O 1.21234 * 127.15743 * 359.97438 * 12 11 10 14 14 C 1.51583 * 105.68105 * 179.97438 * 12 11 10 15 15 N 1.47312 * 103.59300 * 0.31647 * 14 12 11 16 16 C 1.46503 * 126.69032 * 179.76684 * 15 14 12 17 17 C 1.33786 * 124.17905 * 89.99500 * 11 10 8 18 18 O 1.21538 * 123.77152 * 359.96697 * 17 11 10 19 19 C 1.53034 * 109.54067 * 298.63520 * 5 4 2 20 20 C 1.53189 * 109.31618 * 61.36750 * 19 5 4 21 21 N 1.46923 * 109.58733 * 239.56625 * 2 1 3 22 22 C 1.36939 * 120.63039 * 6.63108 * 21 2 1 23 23 H 1.08001 * 119.99662 * 330.84150 * 22 21 2 24 24 C 1.38812 * 120.00251 * 150.84606 * 22 21 2 25 25 N 1.31618 * 119.99468 * 343.81608 * 24 22 21 26 26 Si 1.86792 * 120.00238 * 163.81142 * 24 22 21 27 27 H 1.48499 * 109.47031 * 94.31032 * 26 24 22 28 28 H 1.48499 * 109.47624 * 214.31109 * 26 24 22 29 29 H 1.48502 * 109.47237 * 334.31199 * 26 24 22 30 30 H 1.09008 * 109.47216 * 299.72071 * 1 2 3 31 31 H 1.08999 * 109.47156 * 59.72145 * 1 2 3 32 32 H 1.09003 * 109.47190 * 179.72470 * 1 2 3 33 33 H 1.09004 * 109.49597 * 54.47466 * 4 2 1 34 34 H 1.08992 * 109.52355 * 294.39126 * 4 2 1 35 35 H 0.97002 * 120.00282 * 24.99671 * 7 5 4 36 36 H 1.09002 * 109.46989 * 300.00055 * 10 8 7 37 37 H 1.09000 * 109.47148 * 59.99546 * 10 8 7 38 38 H 1.09005 * 110.76430 * 241.71749 * 14 12 11 39 39 H 1.08996 * 110.56671 * 118.82975 * 14 12 11 40 40 H 1.08997 * 109.47384 * 180.02562 * 16 15 14 41 41 H 1.09004 * 109.47140 * 300.02585 * 16 15 14 42 42 H 1.08997 * 109.47007 * 60.01882 * 16 15 14 43 43 H 1.09004 * 109.50098 * 181.32133 * 19 5 4 44 44 H 1.09007 * 109.50141 * 301.41399 * 19 5 4 45 45 H 1.08998 * 109.59111 * 185.58120 * 20 19 5 46 46 H 1.09005 * 109.58325 * 65.15159 * 20 19 5 47 47 H 0.97007 * 119.99477 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2465 5 6 3.5675 -0.8465 1.1713 6 1 4.0061 0.1488 1.0989 7 7 4.0651 -1.5127 2.3774 8 6 5.3311 -1.3029 2.7895 9 8 6.0568 -0.5587 2.1645 10 6 5.8450 -1.9930 4.0267 11 7 7.2375 -1.6027 4.2609 12 6 8.3025 -2.2628 3.7644 13 8 8.2894 -3.2542 3.0666 14 6 9.5200 -1.5079 4.2599 15 7 8.9459 -0.4114 5.0588 16 6 9.6864 0.6279 5.7785 17 6 7.6092 -0.5503 4.9986 18 8 6.8267 0.1958 5.5537 19 6 3.9569 -1.6658 -0.0612 20 6 3.4651 -0.9488 -1.3224 21 7 2.0226 -0.7012 -1.1935 22 6 1.1538 -1.1156 -2.1675 23 1 0.1365 -1.3715 -1.9103 24 6 1.5805 -1.2067 -3.4852 25 7 2.6908 -0.6077 -3.8602 26 14 0.5790 -2.1795 -4.7262 27 1 -0.3431 -1.2639 -5.4448 28 1 1.4929 -2.8272 -5.7012 29 1 -0.2089 -3.2209 -4.0191 30 1 -0.3634 0.5095 0.8925 31 1 -0.3633 0.5181 -0.8875 32 1 -0.3634 -1.0277 -0.0049 33 1 1.6030 -1.7237 1.2937 34 1 1.7660 -0.1646 2.1374 35 1 3.4848 -2.1078 2.8773 36 1 5.2375 -1.7022 4.8837 37 1 5.7879 -3.0729 3.8906 38 1 10.0961 -1.1120 3.4235 39 1 10.1421 -2.1510 4.8824 40 1 8.9837 1.2961 6.2763 41 1 10.3348 0.1635 6.5216 42 1 10.2918 1.1971 5.0732 43 1 5.0412 -1.7698 -0.1013 44 1 3.4983 -2.6529 -0.0017 45 1 3.6518 -1.5747 -2.1950 46 1 3.9904 0.0001 -1.4316 47 1 2.9889 -0.6711 -4.7812 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948011230.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:59 Heat of formation + Delta-G solvation = -42.772812 kcal Electronic energy + Delta-G solvation = -30220.928655 eV Core-core repulsion = 26019.882763 eV Total energy + Delta-G solvation = -4201.045892 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.61519 -39.69121 -38.84959 -37.68611 -36.43109 -35.42330 -34.57036 -32.43856 -31.55382 -30.51746 -29.47305 -27.77629 -26.59894 -26.25932 -24.69528 -22.77316 -22.20692 -21.50395 -20.44698 -20.07923 -19.25172 -17.95163 -17.80847 -17.01761 -16.72311 -16.24432 -16.03440 -15.56208 -15.18745 -14.96063 -14.94954 -14.66975 -14.33635 -14.23405 -13.94361 -13.69610 -13.50828 -13.24088 -12.98336 -12.95442 -12.77068 -12.75186 -12.28675 -11.58911 -11.23215 -11.21055 -11.10670 -10.93023 -10.88460 -10.63805 -10.61631 -10.51672 -10.31678 -10.12115 -10.03289 -9.74352 -9.70974 -9.40756 -9.26692 -8.74036 -8.41121 -6.62826 -5.75600 -3.18928 1.38507 1.67566 2.55521 2.64797 2.72969 3.34331 3.39204 3.46064 3.47646 3.70933 4.31215 4.50736 4.60080 4.67070 4.75577 4.79628 4.88817 4.99852 5.14209 5.26194 5.28696 5.38809 5.44092 5.50147 5.59700 5.78316 6.00083 6.03633 6.16725 6.24588 6.32768 6.41449 6.43309 6.51985 6.64795 6.78051 6.80527 6.87879 7.03899 7.07136 7.11012 7.39249 7.59455 7.70547 7.78711 7.84356 8.28461 8.48522 9.23934 9.87924 10.45065 11.33226 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021073 B = 0.002512 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.403753 B =11142.082794 C =11749.881157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.026 0.974 4 C -0.133 4.133 5 C 0.152 3.848 6 H 0.081 0.919 7 N -0.718 5.718 8 C 0.498 3.502 9 O -0.530 6.530 10 C 0.099 3.901 11 N -0.561 5.561 12 C 0.527 3.473 13 O -0.464 6.464 14 C 0.067 3.933 15 N -0.630 5.630 16 C 0.119 3.881 17 C 0.706 3.294 18 O -0.540 6.540 19 C -0.146 4.146 20 C 0.176 3.824 21 N -0.587 5.587 22 C -0.251 4.251 23 H 0.070 0.930 24 C 0.002 3.998 25 N -0.902 5.902 26 Si 0.900 3.100 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.279 1.279 30 H 0.038 0.962 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.397 0.603 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.089 0.911 46 H 0.020 0.980 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.267 -2.658 21.732 25.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.044 0.956 4 C -0.173 4.173 5 C 0.049 3.951 6 H 0.099 0.901 7 N -0.369 5.369 8 C 0.281 3.719 9 O -0.406 6.406 10 C -0.026 4.026 11 N -0.306 5.306 12 C 0.314 3.686 13 O -0.333 6.333 14 C -0.059 4.059 15 N -0.370 5.370 16 C -0.021 4.021 17 C 0.409 3.591 18 O -0.413 6.413 19 C -0.187 4.187 20 C 0.049 3.951 21 N -0.311 5.311 22 C -0.381 4.381 23 H 0.088 0.912 24 C -0.197 4.197 25 N -0.546 5.546 26 Si 0.730 3.270 27 H -0.215 1.215 28 H -0.216 1.216 29 H -0.205 1.205 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.230 0.770 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.107 0.893 46 H 0.038 0.962 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.436 -2.151 21.074 24.564 hybrid contribution -0.645 -0.791 -0.568 1.168 sum 11.791 -2.942 20.506 23.836 Atomic orbital electron populations 1.21793 0.95728 1.01437 1.00315 1.20355 0.93101 0.93559 0.86631 0.95591 1.22383 0.93499 1.01712 0.99746 1.21076 0.94345 0.96748 0.82975 0.90093 1.46224 1.12576 1.48792 1.29313 1.20618 0.82777 0.82443 0.86021 1.90737 1.56263 1.36994 1.56580 1.21496 0.80274 1.01880 0.98965 1.45827 1.08334 1.28431 1.48019 1.20848 0.85734 0.83494 0.78522 1.90845 1.85708 1.23121 1.33632 1.22468 0.95975 0.89446 0.98018 1.47397 1.05057 1.30834 1.53663 1.21545 0.96174 0.88714 0.95704 1.15745 0.83459 0.80688 0.79249 1.90981 1.54554 1.45968 1.49847 1.22568 0.99711 0.99597 0.96779 1.20731 0.83246 0.97272 0.93824 1.44173 1.02975 1.64788 1.19135 1.19159 0.94882 1.37794 0.86235 0.91229 1.25097 0.97913 0.99685 0.96974 1.70036 1.24107 1.43737 1.16717 0.86326 0.79349 0.80011 0.81343 1.21511 1.21639 1.20476 0.94288 0.91877 0.92736 0.91711 0.92597 0.76990 0.85707 0.85778 0.85795 0.85961 0.89124 0.91364 0.91262 0.92972 0.92574 0.89301 0.96224 0.93675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 7.95 37.16 0.30 -2.20 16 2 C 0.17 3.51 3.50 -67.59 -0.24 3.28 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.13 -2.24 4.84 -26.61 -0.13 -2.37 16 5 C 0.15 2.69 2.41 -67.89 -0.16 2.52 16 6 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 7 N -0.72 -10.05 5.08 -53.77 -0.27 -10.33 16 8 C 0.50 7.53 7.86 -10.99 -0.09 7.45 16 9 O -0.53 -10.43 16.10 5.55 0.09 -10.34 16 10 C 0.10 1.08 6.18 -5.20 -0.03 1.05 16 11 N -0.56 -6.66 2.09 -122.02 -0.26 -6.91 16 12 C 0.53 5.81 8.32 -10.55 -0.09 5.72 16 13 O -0.46 -6.42 17.75 5.60 0.10 -6.32 16 14 C 0.07 0.45 7.66 -4.32 -0.03 0.41 16 15 N -0.63 -5.36 3.42 -187.95 -0.64 -6.00 16 16 C 0.12 0.62 11.33 59.85 0.68 1.30 16 17 C 0.71 8.71 8.31 -88.03 -0.73 7.98 16 18 O -0.54 -8.32 16.92 5.33 0.09 -8.23 16 19 C -0.15 -2.97 5.65 -26.62 -0.15 -3.12 16 20 C 0.18 4.31 5.29 -3.71 -0.02 4.29 16 21 N -0.59 -14.49 2.99 -164.77 -0.49 -14.98 16 22 C -0.25 -6.72 8.60 -15.06 -0.13 -6.84 16 23 H 0.07 1.80 6.21 -52.49 -0.33 1.48 16 24 C 0.00 0.05 4.93 -17.43 -0.09 -0.03 16 25 N -0.90 -26.41 11.22 55.49 0.62 -25.79 16 26 Si 0.90 21.68 29.58 -169.99 -5.03 16.65 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 30 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.06 1.26 7.66 -51.93 -0.40 0.87 16 32 H 0.05 1.00 7.40 -51.93 -0.38 0.62 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.40 4.11 8.60 -40.82 -0.35 3.76 16 36 H 0.13 1.09 7.86 -51.93 -0.41 0.68 16 37 H 0.12 1.05 8.00 -51.93 -0.42 0.64 16 38 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.12 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.58 7.67 -51.93 -0.40 0.18 16 41 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.09 2.43 6.11 -51.93 -0.32 2.12 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 384.26 15.07 5.79 5.79 Total: -1.00 -37.25 384.26 -8.09 -45.34 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.18 Total: 1.68 kcal Atomic # 6 Polarization: 20.35 SS G_CDS: -0.91 Total: 19.44 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: -1.04 Total: -64.02 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: 0.28 Total: -24.88 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.25 -8.09 -45.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948011230.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.564 kcal (2) G-P(sol) polarization free energy of solvation -37.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds