Wall clock time and date at job start Tue Mar 31 2020 21:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.44975 * 2 1 4 4 C 1.53035 * 109.45934 * 240.02914 * 2 1 3 5 5 C 1.53192 * 109.31319 * 178.61722 * 4 2 1 6 6 N 1.46931 * 108.77510 * 54.63563 * 5 4 2 7 7 C 1.36940 * 120.62825 * 126.36848 * 6 5 4 8 8 H 1.07999 * 120.00151 * 332.61837 * 7 6 5 9 9 C 1.38816 * 119.99559 * 152.61950 * 7 6 5 10 10 N 1.31621 * 119.99759 * 159.37643 * 9 7 6 11 11 Si 1.86803 * 119.99899 * 339.37184 * 9 7 6 12 12 H 1.48494 * 109.47222 * 92.94340 * 11 9 7 13 13 H 1.48506 * 109.46705 * 212.94011 * 11 9 7 14 14 H 1.48499 * 109.47057 * 332.93619 * 11 9 7 15 15 C 1.46923 * 118.73551 * 306.39337 * 6 5 4 16 16 C 1.53042 * 109.45674 * 119.96327 * 2 1 3 17 17 H 1.09007 * 109.49658 * 61.39955 * 16 2 1 18 18 N 1.46498 * 109.49786 * 301.33756 * 16 2 1 19 19 C 1.34782 * 120.00144 * 155.00056 * 18 16 2 20 20 O 1.21284 * 119.99436 * 359.72121 * 19 18 16 21 21 C 1.50697 * 119.99900 * 179.97438 * 19 18 16 22 22 N 1.46501 * 109.46879 * 180.02562 * 21 19 18 23 23 C 1.46407 * 119.53653 * 90.00195 * 22 21 19 24 24 C 1.53046 * 109.51971 * 144.12191 * 23 22 21 25 25 C 1.50810 * 109.18243 * 46.69785 * 24 23 22 26 26 O 1.21232 * 120.01516 * 145.79037 * 25 24 23 27 27 N 1.34560 * 119.96446 * 325.76526 * 25 24 23 28 28 C 1.34290 * 119.53633 * 269.72913 * 22 21 19 29 29 O 1.21541 * 119.21018 * 5.71659 * 28 22 21 30 30 H 1.09001 * 109.47003 * 300.04395 * 1 2 3 31 31 H 1.09004 * 109.46501 * 60.03688 * 1 2 3 32 32 H 1.08997 * 109.47325 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.49784 * 298.57020 * 4 2 1 34 34 H 1.08996 * 109.50108 * 58.66722 * 4 2 1 35 35 H 1.09002 * 109.58946 * 174.41970 * 5 4 2 36 36 H 1.09002 * 109.58583 * 294.70685 * 5 4 2 37 37 H 0.96999 * 119.99572 * 179.97438 * 10 9 7 38 38 H 1.08994 * 109.59014 * 293.81728 * 15 6 5 39 39 H 1.09007 * 109.58433 * 173.39217 * 15 6 5 40 40 H 0.96996 * 120.00289 * 335.00018 * 18 16 2 41 41 H 1.08993 * 109.47642 * 300.00102 * 21 19 18 42 42 H 1.09007 * 109.46771 * 60.00433 * 21 19 18 43 43 H 1.09000 * 109.46828 * 264.13594 * 23 22 21 44 44 H 1.08997 * 109.46136 * 24.11864 * 23 22 21 45 45 H 1.08995 * 109.51716 * 166.61064 * 24 23 22 46 46 H 1.09000 * 109.51905 * 286.78385 * 24 23 22 47 47 H 0.97000 * 119.50284 * 184.41360 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6887 -1.2641 6 7 4.0679 -1.2489 0.0002 7 6 4.9757 -2.2742 0.0002 8 1 5.0115 -2.9638 -0.8302 9 6 5.8499 -2.4270 1.0676 10 7 6.4262 -3.5903 1.2848 11 14 6.2084 -0.9818 2.1956 12 1 5.2799 -1.0158 3.3540 13 1 7.6091 -1.0686 2.6813 14 1 6.0214 0.2877 1.4482 15 6 3.5713 -0.6886 1.2643 16 6 2.0398 -0.7207 1.2502 17 1 1.6972 -1.7555 1.2387 18 7 1.5255 -0.0486 2.4459 19 6 1.3970 -0.7321 3.6005 20 8 1.7023 -1.9049 3.6480 21 6 0.8684 -0.0405 4.8306 22 7 0.8253 -0.9910 5.9446 23 6 1.9911 -1.1314 6.8191 24 6 1.5257 -1.3831 8.2552 25 6 0.4535 -2.4437 8.2500 26 8 0.3702 -3.2265 9.1719 27 7 -0.4110 -2.5203 7.2216 28 6 -0.2849 -1.7173 6.1526 29 8 -1.1964 -1.6502 5.3513 30 1 -0.3633 0.5145 0.8896 31 1 -0.3632 0.5133 -0.8904 32 1 -0.3634 -1.0276 0.0005 33 1 1.6978 -1.7557 -1.2382 34 1 1.6573 -0.2209 -2.1398 35 1 3.9417 -1.2848 -2.0982 36 1 3.9143 0.3405 -1.3698 37 1 7.0374 -3.6969 2.0305 38 1 3.9143 0.3409 1.3674 39 1 3.9415 -1.2845 2.0986 40 1 1.2775 0.8883 2.4069 41 1 1.5228 0.7919 5.0890 42 1 -0.1359 0.3345 4.6334 43 1 2.5991 -1.9709 6.4820 44 1 2.5833 -0.2170 6.7845 45 1 2.3691 -1.7209 8.8574 46 1 1.1237 -0.4609 8.6748 47 1 -1.1372 -3.1625 7.2549 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968514771.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:32 Heat of formation + Delta-G solvation = -65.043774 kcal Electronic energy + Delta-G solvation = -30971.709915 eV Core-core repulsion = 26769.698281 eV Total energy + Delta-G solvation = -4202.011633 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.90208 -39.90966 -39.06505 -37.87045 -36.38317 -34.87168 -34.52461 -33.26177 -31.87257 -31.36898 -29.74076 -28.02570 -27.18799 -25.34882 -23.92668 -23.50215 -22.70823 -21.24817 -20.49697 -19.76620 -19.13754 -18.57828 -17.96922 -17.38018 -16.90803 -16.50649 -16.23617 -15.49100 -15.15024 -15.06487 -14.87843 -14.69475 -14.65113 -14.22967 -13.79237 -13.77386 -13.56094 -13.37501 -13.25044 -12.90026 -12.51963 -12.42158 -12.26681 -12.02704 -11.86937 -11.85837 -11.39132 -10.95727 -10.87810 -10.72821 -10.54921 -10.52621 -10.45445 -10.28569 -10.18156 -9.94449 -9.76220 -9.48822 -9.01262 -8.88720 -8.51689 -6.98104 -5.94025 -3.30247 1.46909 1.99915 2.72345 2.80922 2.94872 3.30461 3.38036 3.43880 3.47353 4.01490 4.18114 4.53230 4.54232 4.59765 4.75702 4.91391 4.97488 4.99859 5.06317 5.08824 5.13379 5.26087 5.42733 5.43852 5.66092 5.75227 5.81999 5.82374 5.84266 5.92693 6.01916 6.12861 6.17705 6.27061 6.30662 6.50104 6.54467 6.59984 6.63159 6.77657 6.94098 7.07125 7.22771 7.66869 7.90001 7.96405 8.33942 8.42943 8.93754 9.72557 10.08448 11.21925 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012233 B = 0.003870 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.403302 B = 7233.928561 C = 8767.387028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.068 0.932 4 C -0.128 4.128 5 C 0.145 3.855 6 N -0.601 5.601 7 C -0.263 4.263 8 H 0.086 0.914 9 C 0.027 3.973 10 N -0.904 5.904 11 Si 0.883 3.117 12 H -0.289 1.289 13 H -0.304 1.304 14 H -0.272 1.272 15 C 0.122 3.878 16 C 0.133 3.867 17 H 0.091 0.909 18 N -0.722 5.722 19 C 0.489 3.511 20 O -0.517 6.517 21 C 0.111 3.889 22 N -0.598 5.598 23 C 0.106 3.894 24 C -0.156 4.156 25 C 0.525 3.475 26 O -0.505 6.505 27 N -0.674 5.674 28 C 0.716 3.284 29 O -0.552 6.552 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.023 0.977 37 H 0.262 0.738 38 H 0.023 0.977 39 H 0.078 0.922 40 H 0.394 0.606 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.086 0.914 44 H 0.104 0.896 45 H 0.128 0.872 46 H 0.114 0.886 47 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.717 13.454 9.506 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.167 4.167 5 C 0.019 3.981 6 N -0.325 5.325 7 C -0.391 4.391 8 H 0.104 0.896 9 C -0.172 4.172 10 N -0.547 5.547 11 Si 0.714 3.286 12 H -0.217 1.217 13 H -0.232 1.232 14 H -0.197 1.197 15 C -0.005 4.005 16 C 0.028 3.972 17 H 0.109 0.891 18 N -0.374 5.374 19 C 0.273 3.727 20 O -0.391 6.391 21 C -0.016 4.016 22 N -0.334 5.334 23 C -0.017 4.017 24 C -0.196 4.196 25 C 0.313 3.687 26 O -0.377 6.377 27 N -0.342 5.342 28 C 0.418 3.582 29 O -0.426 6.426 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.041 0.959 37 H 0.072 0.928 38 H 0.041 0.959 39 H 0.096 0.904 40 H 0.227 0.773 41 H 0.131 0.869 42 H 0.136 0.864 43 H 0.104 0.896 44 H 0.122 0.878 45 H 0.146 0.854 46 H 0.132 0.868 47 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -12.714 12.207 9.681 20.109 hybrid contribution -0.053 0.886 0.709 1.136 sum -12.766 13.093 10.390 21.032 Atomic orbital electron populations 1.21834 0.95437 1.01915 1.00921 1.21300 0.95110 0.99493 0.95157 0.91357 1.22077 0.98489 1.00558 0.95597 1.20987 0.91079 0.96588 0.89400 1.44281 1.48567 1.40494 0.99147 1.18908 1.09557 1.02974 1.07663 0.89597 1.25268 0.97365 0.96598 0.97994 1.69842 1.32407 1.21926 1.30493 0.86920 0.76088 0.84822 0.80785 1.21668 1.23202 1.19721 1.21678 0.91010 0.96998 0.90855 1.21786 0.95951 0.97441 0.82053 0.89127 1.46057 1.66658 1.14155 1.10571 1.20978 0.78818 0.88008 0.84936 1.90790 1.48277 1.15762 1.84257 1.21358 1.04872 0.90740 0.84653 1.46492 1.13516 1.42747 1.30638 1.21747 0.87705 1.05211 0.87009 1.22272 0.99042 0.99196 0.99116 1.20980 0.81745 0.85012 0.81011 1.90794 1.71245 1.40834 1.34814 1.44213 1.32427 1.39190 1.18416 1.15470 0.83101 0.78501 0.81152 1.91003 1.39841 1.66695 1.45091 0.93061 0.92922 0.92721 0.91646 0.92118 0.91659 0.95906 0.92787 0.95912 0.90416 0.77253 0.86853 0.86446 0.89587 0.87751 0.85384 0.86752 0.73227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.02 37.16 0.34 -1.37 16 2 C -0.09 -1.30 2.27 -90.58 -0.21 -1.50 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.13 -1.97 5.36 -26.61 -0.14 -2.12 16 5 C 0.15 2.75 6.52 -3.71 -0.02 2.73 16 6 N -0.60 -14.23 2.77 -172.32 -0.48 -14.71 16 7 C -0.26 -7.45 10.04 -15.06 -0.15 -7.60 16 8 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 9 C 0.03 0.80 5.23 -17.43 -0.09 0.70 16 10 N -0.90 -28.28 13.97 55.49 0.78 -27.50 16 11 Si 0.88 22.53 24.35 -169.99 -4.14 18.39 16 12 H -0.29 -7.20 6.62 56.52 0.37 -6.83 16 13 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 14 H -0.27 -6.71 6.64 56.52 0.38 -6.33 16 15 C 0.12 2.64 3.78 -3.71 -0.01 2.62 16 16 C 0.13 2.34 2.07 -67.81 -0.14 2.20 16 17 H 0.09 1.93 7.57 -51.93 -0.39 1.53 16 18 N -0.72 -9.92 4.37 -53.69 -0.23 -10.16 16 19 C 0.49 7.41 7.86 -10.98 -0.09 7.33 16 20 O -0.52 -10.75 16.09 5.55 0.09 -10.66 16 21 C 0.11 1.09 5.82 -5.19 -0.03 1.06 16 22 N -0.60 -6.49 2.28 -181.17 -0.41 -6.90 16 23 C 0.11 0.87 6.64 -4.07 -0.03 0.84 16 24 C -0.16 -1.01 6.28 -27.81 -0.17 -1.19 16 25 C 0.52 5.44 7.76 -11.03 -0.09 5.35 16 26 O -0.50 -6.76 17.93 5.60 0.10 -6.66 16 27 N -0.67 -7.40 5.18 -16.03 -0.08 -7.48 16 28 C 0.72 9.19 8.21 -87.78 -0.72 8.47 16 29 O -0.55 -8.81 16.66 5.33 0.09 -8.72 16 30 H 0.05 0.54 7.36 -51.93 -0.38 0.16 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 38 H 0.02 0.48 7.08 -51.93 -0.37 0.11 16 39 H 0.08 1.97 4.50 -51.93 -0.23 1.74 16 40 H 0.39 3.77 8.31 -40.82 -0.34 3.43 16 41 H 0.11 0.65 7.82 -51.93 -0.41 0.24 16 42 H 0.12 1.02 7.43 -51.93 -0.39 0.63 16 43 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.10 0.55 7.79 -51.93 -0.40 0.15 16 45 H 0.13 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.43 4.30 8.86 -40.82 -0.36 3.94 16 LS Contribution 375.10 15.07 5.65 5.65 Total: -1.00 -39.45 375.10 -7.30 -46.75 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -7.10 Total: 4.46 kcal Atomic # 6 Polarization: 19.09 SS G_CDS: -1.56 Total: 17.53 kcal Atomic # 7 Polarization: -66.32 SS G_CDS: -0.43 Total: -66.76 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: 0.28 Total: -26.03 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.14 Total: 18.39 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -39.45 -7.30 -46.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968514771.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.293 kcal (2) G-P(sol) polarization free energy of solvation -39.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds