Wall clock time and date at job start Tue Mar 31 2020 21:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.44975 * 2 1 4 4 C 1.53035 * 109.45934 * 240.02914 * 2 1 3 5 5 C 1.53192 * 109.31319 * 178.61722 * 4 2 1 6 6 N 1.46931 * 108.77510 * 54.63563 * 5 4 2 7 7 C 1.36940 * 120.62825 * 126.36848 * 6 5 4 8 8 H 1.07999 * 120.00151 * 332.61837 * 7 6 5 9 9 C 1.38816 * 119.99559 * 152.61950 * 7 6 5 10 10 N 1.31621 * 119.99759 * 159.37643 * 9 7 6 11 11 Si 1.86803 * 119.99899 * 339.37184 * 9 7 6 12 12 H 1.48494 * 109.47222 * 92.94340 * 11 9 7 13 13 H 1.48506 * 109.46705 * 212.94011 * 11 9 7 14 14 H 1.48499 * 109.47057 * 332.93619 * 11 9 7 15 15 C 1.46923 * 118.73551 * 306.39337 * 6 5 4 16 16 C 1.53042 * 109.45674 * 119.96327 * 2 1 3 17 17 H 1.09007 * 109.49658 * 61.39955 * 16 2 1 18 18 N 1.46498 * 109.49786 * 301.33756 * 16 2 1 19 19 C 1.34782 * 120.00144 * 155.00056 * 18 16 2 20 20 O 1.21284 * 119.99436 * 359.72121 * 19 18 16 21 21 C 1.50697 * 119.99900 * 179.97438 * 19 18 16 22 22 N 1.46501 * 109.46879 * 180.02562 * 21 19 18 23 23 C 1.46407 * 119.53653 * 90.00195 * 22 21 19 24 24 C 1.53046 * 109.51971 * 144.12191 * 23 22 21 25 25 C 1.50810 * 109.18243 * 46.69785 * 24 23 22 26 26 O 1.21232 * 120.01516 * 145.79037 * 25 24 23 27 27 N 1.34560 * 119.96446 * 325.76526 * 25 24 23 28 28 C 1.34290 * 119.53633 * 269.72913 * 22 21 19 29 29 O 1.21541 * 119.21018 * 5.71659 * 28 22 21 30 30 H 1.09001 * 109.47003 * 300.04395 * 1 2 3 31 31 H 1.09004 * 109.46501 * 60.03688 * 1 2 3 32 32 H 1.08997 * 109.47325 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.49784 * 298.57020 * 4 2 1 34 34 H 1.08996 * 109.50108 * 58.66722 * 4 2 1 35 35 H 1.09002 * 109.58946 * 174.41970 * 5 4 2 36 36 H 1.09002 * 109.58583 * 294.70685 * 5 4 2 37 37 H 0.96999 * 119.99572 * 179.97438 * 10 9 7 38 38 H 1.08994 * 109.59014 * 293.81728 * 15 6 5 39 39 H 1.09007 * 109.58433 * 173.39217 * 15 6 5 40 40 H 0.96996 * 120.00289 * 335.00018 * 18 16 2 41 41 H 1.08993 * 109.47642 * 300.00102 * 21 19 18 42 42 H 1.09007 * 109.46771 * 60.00433 * 21 19 18 43 43 H 1.09000 * 109.46828 * 264.13594 * 23 22 21 44 44 H 1.08997 * 109.46136 * 24.11864 * 23 22 21 45 45 H 1.08995 * 109.51716 * 166.61064 * 24 23 22 46 46 H 1.09000 * 109.51905 * 286.78385 * 24 23 22 47 47 H 0.97000 * 119.50284 * 184.41360 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6887 -1.2641 6 7 4.0679 -1.2489 0.0002 7 6 4.9757 -2.2742 0.0002 8 1 5.0115 -2.9638 -0.8302 9 6 5.8499 -2.4270 1.0676 10 7 6.4262 -3.5903 1.2848 11 14 6.2084 -0.9818 2.1956 12 1 5.2799 -1.0158 3.3540 13 1 7.6091 -1.0686 2.6813 14 1 6.0214 0.2877 1.4482 15 6 3.5713 -0.6886 1.2643 16 6 2.0398 -0.7207 1.2502 17 1 1.6972 -1.7555 1.2387 18 7 1.5255 -0.0486 2.4459 19 6 1.3970 -0.7321 3.6005 20 8 1.7023 -1.9049 3.6480 21 6 0.8684 -0.0405 4.8306 22 7 0.8253 -0.9910 5.9446 23 6 1.9911 -1.1314 6.8191 24 6 1.5257 -1.3831 8.2552 25 6 0.4535 -2.4437 8.2500 26 8 0.3702 -3.2265 9.1719 27 7 -0.4110 -2.5203 7.2216 28 6 -0.2849 -1.7173 6.1526 29 8 -1.1964 -1.6502 5.3513 30 1 -0.3633 0.5145 0.8896 31 1 -0.3632 0.5133 -0.8904 32 1 -0.3634 -1.0276 0.0005 33 1 1.6978 -1.7557 -1.2382 34 1 1.6573 -0.2209 -2.1398 35 1 3.9417 -1.2848 -2.0982 36 1 3.9143 0.3405 -1.3698 37 1 7.0374 -3.6969 2.0305 38 1 3.9143 0.3409 1.3674 39 1 3.9415 -1.2845 2.0986 40 1 1.2775 0.8883 2.4069 41 1 1.5228 0.7919 5.0890 42 1 -0.1359 0.3345 4.6334 43 1 2.5991 -1.9709 6.4820 44 1 2.5833 -0.2170 6.7845 45 1 2.3691 -1.7209 8.8574 46 1 1.1237 -0.4609 8.6748 47 1 -1.1372 -3.1625 7.2549 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968514771.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:31 Heat of formation + Delta-G solvation = -98.055081 kcal Electronic energy + Delta-G solvation = -30973.141392 eV Core-core repulsion = 26769.698281 eV Total energy + Delta-G solvation = -4203.443111 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.77864 -41.12601 -40.09585 -39.23955 -37.30020 -36.17914 -35.75956 -34.71178 -33.32882 -32.61868 -31.07630 -29.32939 -28.40812 -26.06741 -25.69107 -24.65004 -23.88596 -22.73846 -21.73558 -21.07333 -20.06707 -19.42637 -18.93218 -18.80946 -18.37723 -17.57367 -17.46443 -16.96884 -16.36097 -16.21874 -15.94059 -15.78330 -15.64309 -15.54549 -15.20846 -15.13774 -14.88112 -14.59522 -14.41867 -14.19661 -13.83205 -13.61964 -13.51397 -13.30336 -13.05242 -12.87190 -12.62119 -12.50557 -12.29450 -12.23206 -11.91729 -11.74713 -11.64452 -11.52052 -11.42070 -11.41685 -11.26334 -11.13468 -10.78967 -10.11055 -9.96654 -8.92877 -8.19610 -5.51666 0.60528 1.16478 1.25548 1.35394 1.46005 1.65657 1.88852 2.12487 2.29514 2.40812 3.04936 3.34309 3.38419 3.57610 3.70687 3.82077 3.94978 3.98874 4.04235 4.10152 4.33309 4.34575 4.38569 4.42329 4.54564 4.57455 4.67279 4.80422 4.82911 4.86694 4.89522 4.94893 5.01881 5.05663 5.11495 5.17373 5.20553 5.39327 5.41901 5.45679 5.60685 5.84591 6.09497 6.21326 6.38215 6.61102 6.89695 6.97783 7.35395 7.60661 7.98779 9.00467 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012233 B = 0.003870 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.403302 B = 7233.928561 C = 8767.387028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 H 0.099 0.901 4 C -0.121 4.121 5 C 0.138 3.862 6 N -0.619 5.619 7 C -0.255 4.255 8 H 0.047 0.953 9 C -0.041 4.041 10 N -0.959 5.959 11 Si 0.957 3.043 12 H -0.282 1.282 13 H -0.309 1.309 14 H -0.249 1.249 15 C 0.122 3.878 16 C 0.145 3.855 17 H 0.040 0.960 18 N -0.705 5.705 19 C 0.480 3.520 20 O -0.585 6.585 21 C 0.116 3.884 22 N -0.596 5.596 23 C 0.101 3.899 24 C -0.142 4.142 25 C 0.521 3.479 26 O -0.541 6.541 27 N -0.675 5.675 28 C 0.713 3.287 29 O -0.591 6.591 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.030 0.970 33 H 0.038 0.962 34 H 0.101 0.899 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.260 0.740 38 H 0.045 0.955 39 H 0.036 0.964 40 H 0.420 0.580 41 H 0.171 0.829 42 H 0.136 0.864 43 H 0.054 0.946 44 H 0.147 0.853 45 H 0.146 0.854 46 H 0.152 0.848 47 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.868 18.795 10.384 25.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 H 0.118 0.882 4 C -0.160 4.160 5 C 0.014 3.986 6 N -0.344 5.344 7 C -0.384 4.384 8 H 0.065 0.935 9 C -0.235 4.235 10 N -0.605 5.605 11 Si 0.786 3.214 12 H -0.209 1.209 13 H -0.238 1.238 14 H -0.173 1.173 15 C -0.004 4.004 16 C 0.038 3.962 17 H 0.059 0.941 18 N -0.359 5.359 19 C 0.266 3.734 20 O -0.463 6.463 21 C -0.010 4.010 22 N -0.331 5.331 23 C -0.020 4.020 24 C -0.182 4.182 25 C 0.312 3.688 26 O -0.415 6.415 27 N -0.343 5.343 28 C 0.414 3.586 29 O -0.468 6.468 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.119 0.881 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.259 0.741 41 H 0.188 0.812 42 H 0.153 0.847 43 H 0.072 0.928 44 H 0.165 0.835 45 H 0.164 0.836 46 H 0.170 0.830 47 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -13.899 17.654 10.542 24.819 hybrid contribution 0.252 -0.884 0.320 0.973 sum -13.647 16.770 10.862 24.196 Atomic orbital electron populations 1.21775 0.93232 1.01163 1.03188 1.21289 0.96789 1.00029 0.92098 0.88238 1.22005 0.95725 0.99980 0.98313 1.21231 0.93411 0.97171 0.86798 1.44419 1.48206 1.40024 1.01725 1.18867 1.10136 1.03327 1.06113 0.93522 1.26034 0.97790 0.99207 1.00491 1.70007 1.34192 1.24324 1.31998 0.85731 0.75229 0.81625 0.78864 1.20934 1.23788 1.17319 1.21662 0.93704 0.96663 0.88411 1.21287 0.93268 0.96179 0.85467 0.94124 1.45825 1.65665 1.15288 1.09160 1.22106 0.77390 0.87403 0.86472 1.90780 1.51215 1.18968 1.85383 1.21658 1.06776 0.90874 0.81729 1.46695 1.13340 1.42176 1.30905 1.21977 0.86832 1.06094 0.87127 1.22360 0.98152 0.99166 0.98477 1.21798 0.81870 0.85259 0.79907 1.90781 1.72276 1.42474 1.36013 1.44274 1.32688 1.38854 1.18471 1.15700 0.83425 0.78503 0.80934 1.90966 1.41429 1.68039 1.46365 0.91201 0.90256 0.95036 0.94282 0.88077 0.92962 0.93296 0.93133 0.93689 0.94579 0.74124 0.81211 0.84672 0.92801 0.83482 0.83641 0.83048 0.73418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.02 71.98 0.65 -2.06 16 2 C -0.08 -2.06 2.27 -10.77 -0.02 -2.09 16 3 H 0.10 1.96 8.14 -2.39 -0.02 1.95 16 4 C -0.12 -3.47 5.36 30.67 0.16 -3.31 16 5 C 0.14 5.05 6.52 86.36 0.56 5.61 16 6 N -0.62 -29.43 2.77 -699.08 -1.94 -31.37 16 7 C -0.25 -15.09 10.04 84.03 0.84 -14.25 16 8 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 9 C -0.04 -2.49 5.23 84.86 0.44 -2.04 16 10 N -0.96 -63.28 13.97 21.65 0.30 -62.98 16 11 Si 0.96 47.52 24.35 68.60 1.67 49.19 16 12 H -0.28 -13.55 6.62 99.48 0.66 -12.89 16 13 H -0.31 -15.43 7.11 99.48 0.71 -14.72 16 14 H -0.25 -11.28 6.64 99.48 0.66 -10.62 16 15 C 0.12 5.14 3.78 86.36 0.33 5.47 16 16 C 0.15 4.91 2.07 45.07 0.09 5.01 16 17 H 0.04 1.80 7.57 -2.38 -0.02 1.78 16 18 N -0.71 -17.33 4.37 -442.16 -1.93 -19.26 16 19 C 0.48 13.71 7.86 87.66 0.69 14.40 16 20 O -0.58 -24.92 16.09 -3.04 -0.05 -24.97 16 21 C 0.12 1.83 5.82 85.63 0.50 2.33 16 22 N -0.60 -11.53 2.28 -845.65 -1.93 -13.46 16 23 C 0.10 1.37 6.64 86.41 0.57 1.95 16 24 C -0.14 -1.41 6.28 29.90 0.19 -1.22 16 25 C 0.52 10.36 7.76 87.73 0.68 11.04 16 26 O -0.54 -14.44 17.93 -2.88 -0.05 -14.50 16 27 N -0.68 -14.83 5.18 -441.70 -2.29 -17.12 16 28 C 0.71 17.78 8.21 179.36 1.47 19.26 16 29 O -0.59 -18.75 16.66 -3.84 -0.06 -18.82 16 30 H 0.07 1.14 7.36 -2.39 -0.02 1.12 16 31 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 38 H 0.05 1.71 7.08 -2.39 -0.02 1.69 16 39 H 0.04 1.83 4.50 -2.38 -0.01 1.82 16 40 H 0.42 5.86 8.31 -92.71 -0.77 5.09 16 41 H 0.17 0.80 7.82 -2.39 -0.02 0.78 16 42 H 0.14 1.76 7.43 -2.38 -0.02 1.74 16 43 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.15 0.76 7.79 -2.39 -0.02 0.75 16 45 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.15 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.42 9.01 8.86 -92.71 -0.82 8.18 16 Total: -1.00 -96.79 375.10 0.21 -96.57 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -0.67 Total: 16.62 kcal Atomic # 6 Polarization: 32.92 SS G_CDS: 7.16 Total: 40.09 kcal Atomic # 7 Polarization: -136.40 SS G_CDS: -7.78 Total: -144.19 kcal Atomic # 8 Polarization: -58.12 SS G_CDS: -0.16 Total: -58.28 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 1.67 Total: 49.19 kcal Total: -96.79 0.21 -96.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968514771.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.481 kcal (2) G-P(sol) polarization free energy of solvation -96.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds