Wall clock time and date at job start Tue Mar 31 2020 21:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.44814 * 2 1 4 4 C 1.53044 * 109.45787 * 119.96339 * 2 1 3 5 5 C 1.53189 * 109.31180 * 181.38669 * 4 2 1 6 6 N 1.46920 * 108.77370 * 305.36230 * 5 4 2 7 7 C 1.36936 * 120.63113 * 233.63106 * 6 5 4 8 8 H 1.07998 * 120.00357 * 27.65947 * 7 6 5 9 9 C 1.38821 * 120.00233 * 207.66538 * 7 6 5 10 10 N 1.31619 * 119.99629 * 17.36471 * 9 7 6 11 11 Si 1.86794 * 120.00121 * 197.37229 * 9 7 6 12 12 H 1.48499 * 109.47135 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47246 * 119.99486 * 11 9 7 14 14 H 1.48496 * 109.47263 * 239.99641 * 11 9 7 15 15 C 1.46929 * 118.73996 * 53.61446 * 6 5 4 16 16 C 1.53034 * 109.45879 * 240.02958 * 2 1 3 17 17 H 1.09000 * 109.52623 * 298.58315 * 16 2 1 18 18 N 1.46497 * 109.49943 * 58.66737 * 16 2 1 19 19 C 1.34780 * 119.99958 * 204.83410 * 18 16 2 20 20 O 1.21276 * 119.99897 * 0.02562 * 19 18 16 21 21 C 1.50705 * 119.99781 * 179.97438 * 19 18 16 22 22 N 1.46503 * 109.46811 * 180.02562 * 21 19 18 23 23 C 1.46401 * 119.53423 * 270.02152 * 22 21 19 24 24 C 1.53040 * 109.52023 * 144.12652 * 23 22 21 25 25 C 1.50804 * 109.18427 * 46.69188 * 24 23 22 26 26 O 1.21236 * 120.01822 * 145.78907 * 25 24 23 27 27 N 1.34555 * 119.96820 * 325.77286 * 25 24 23 28 28 C 1.34292 * 119.53210 * 90.00393 * 22 21 19 29 29 O 1.21532 * 119.21392 * 5.42543 * 28 22 21 30 30 H 1.09001 * 109.47559 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47659 * 299.96774 * 1 2 3 32 32 H 1.09007 * 109.47282 * 59.96939 * 1 2 3 33 33 H 1.09005 * 109.49800 * 61.42953 * 4 2 1 34 34 H 1.09000 * 109.52420 * 301.35579 * 4 2 1 35 35 H 1.08994 * 109.58372 * 185.57809 * 5 4 2 36 36 H 1.09000 * 109.70206 * 65.22334 * 5 4 2 37 37 H 0.97003 * 119.99751 * 179.97438 * 10 9 7 38 38 H 1.09003 * 109.58921 * 186.60580 * 15 6 5 39 39 H 1.08996 * 109.70639 * 66.24059 * 15 6 5 40 40 H 0.97004 * 119.99908 * 24.83369 * 18 16 2 41 41 H 1.08991 * 109.47087 * 60.00472 * 21 19 18 42 42 H 1.08999 * 109.46946 * 299.99717 * 21 19 18 43 43 H 1.09004 * 109.46363 * 264.13670 * 23 22 21 44 44 H 1.09005 * 109.46482 * 24.10983 * 23 22 21 45 45 H 1.08999 * 109.52326 * 166.60479 * 24 23 22 46 46 H 1.08999 * 109.51800 * 286.77940 * 24 23 22 47 47 H 0.97001 * 119.51180 * 184.42975 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0398 -0.7207 1.2502 5 6 3.5713 -0.6885 1.2644 6 7 4.0678 -1.2489 0.0002 7 6 4.9756 -2.2740 0.0003 8 1 5.0085 -2.9662 0.8286 9 6 5.8539 -2.4236 -1.0643 10 7 6.0603 -1.4219 -1.8928 11 14 6.7425 -4.0464 -1.3212 12 1 6.3402 -5.0044 -0.2602 13 1 6.3849 -4.6015 -2.6514 14 1 8.2092 -3.8234 -1.2559 15 6 3.5714 -0.6886 -1.2641 16 6 2.0398 -0.7208 -1.2500 17 1 1.6978 -1.7557 -1.2388 18 7 1.5256 -0.0488 -2.4459 19 6 1.4003 -0.7316 -3.6012 20 8 1.7127 -1.9024 -3.6506 21 6 0.8708 -0.0404 -4.8313 22 7 0.8305 -0.9903 -5.9459 23 6 1.9973 -1.1277 -6.8195 24 6 2.1466 -2.5896 -7.2470 25 6 0.8048 -3.1157 -7.6907 26 8 0.7383 -3.9266 -8.5895 27 7 -0.3187 -2.6849 -7.0884 28 6 -0.2760 -1.7229 -6.1516 29 8 -1.2607 -1.5142 -5.4706 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5133 0.8902 32 1 -0.3634 0.5143 -0.8898 33 1 1.6977 -1.7556 1.2385 34 1 1.6571 -0.2212 2.1402 35 1 3.9415 -1.2844 2.0985 36 1 3.9163 0.3402 1.3687 37 1 6.6742 -1.5262 -2.6365 38 1 3.9417 -1.2847 -2.0983 39 1 3.9142 0.3406 -1.3698 40 1 1.2754 0.8875 -2.4063 41 1 1.5230 0.7942 -5.0881 42 1 -0.1348 0.3313 -4.6346 43 1 1.8653 -0.5027 -7.7027 44 1 2.8922 -0.8131 -6.2825 45 1 2.8553 -2.6571 -8.0724 46 1 2.5091 -3.1799 -6.4055 47 1 -1.1723 -3.0747 -7.3343 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968514773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:41 Heat of formation + Delta-G solvation = -72.284406 kcal Electronic energy + Delta-G solvation = -31012.543336 eV Core-core repulsion = 26810.217725 eV Total energy + Delta-G solvation = -4202.325611 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.80016 -39.72513 -38.93387 -37.65203 -36.25384 -34.77010 -34.35705 -33.15082 -31.71470 -31.00170 -29.37188 -27.71484 -27.01559 -25.24236 -24.10081 -23.32687 -22.25446 -21.08124 -20.26062 -19.57811 -19.03632 -18.49024 -17.84869 -17.19938 -16.84576 -16.51718 -15.98276 -15.29487 -14.94841 -14.83742 -14.77514 -14.59752 -14.36543 -13.76259 -13.72444 -13.65753 -13.43426 -13.36521 -13.03356 -12.76572 -12.46199 -12.10308 -12.03275 -11.82598 -11.66808 -11.59166 -10.93896 -10.84584 -10.75031 -10.65710 -10.46758 -10.42490 -10.37751 -10.17817 -10.06554 -9.95025 -9.77707 -9.53319 -8.90547 -8.56254 -8.46831 -6.69463 -5.80372 -3.22453 1.56860 2.13488 2.87408 2.92620 2.99385 3.38218 3.46377 3.48355 3.58039 4.17177 4.33817 4.50214 4.72026 4.76116 4.92552 5.12306 5.16867 5.19238 5.23381 5.25018 5.37109 5.49651 5.54676 5.57048 5.76049 5.89662 5.92267 5.99735 6.01803 6.10489 6.24227 6.28936 6.37029 6.44323 6.50934 6.71574 6.73631 6.91253 6.94330 7.16322 7.25322 7.32159 7.67312 7.78827 7.85556 7.98497 8.43659 8.57340 9.19379 9.83195 10.37877 11.27756 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010391 B = 0.004100 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.036685 B = 6828.097886 C = 8839.576996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.067 0.933 4 C -0.126 4.126 5 C 0.142 3.858 6 N -0.589 5.589 7 C -0.253 4.253 8 H 0.066 0.934 9 C 0.007 3.993 10 N -0.900 5.900 11 Si 0.900 3.100 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.290 1.290 15 C 0.168 3.832 16 C 0.125 3.875 17 H 0.080 0.920 18 N -0.716 5.716 19 C 0.491 3.509 20 O -0.525 6.525 21 C 0.108 3.892 22 N -0.597 5.597 23 C 0.112 3.888 24 C -0.160 4.160 25 C 0.528 3.472 26 O -0.508 6.508 27 N -0.675 5.675 28 C 0.718 3.282 29 O -0.557 6.557 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.018 0.982 37 H 0.252 0.748 38 H 0.094 0.906 39 H 0.016 0.984 40 H 0.393 0.607 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.078 0.922 44 H 0.107 0.893 45 H 0.126 0.874 46 H 0.124 0.876 47 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.816 7.662 -7.736 15.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.085 0.915 4 C -0.165 4.165 5 C 0.016 3.984 6 N -0.311 5.311 7 C -0.383 4.383 8 H 0.084 0.916 9 C -0.192 4.192 10 N -0.544 5.544 11 Si 0.730 3.270 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.217 1.217 15 C 0.041 3.959 16 C 0.020 3.980 17 H 0.099 0.901 18 N -0.367 5.367 19 C 0.275 3.725 20 O -0.400 6.400 21 C -0.019 4.019 22 N -0.333 5.333 23 C -0.010 4.010 24 C -0.200 4.200 25 C 0.316 3.684 26 O -0.381 6.381 27 N -0.343 5.343 28 C 0.419 3.581 29 O -0.432 6.432 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.036 0.964 37 H 0.062 0.938 38 H 0.112 0.888 39 H 0.034 0.966 40 H 0.226 0.774 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.097 0.903 44 H 0.125 0.875 45 H 0.144 0.856 46 H 0.142 0.858 47 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -10.818 6.544 -7.967 14.944 hybrid contribution 0.098 -0.539 -0.216 0.589 sum -10.720 6.006 -8.183 14.763 Atomic orbital electron populations 1.21848 0.95934 1.01608 1.00751 1.21298 0.94604 0.99613 0.95558 0.91483 1.22069 0.98873 1.00074 0.95524 1.20960 0.90839 0.96479 0.90150 1.43970 1.48093 1.39837 0.99244 1.19208 1.09668 1.03094 1.06322 0.91593 1.24994 0.97134 0.97385 0.99698 1.70033 1.37589 1.28993 1.17834 0.86260 0.78936 0.83837 0.77968 1.20220 1.21480 1.21743 1.21077 0.86466 0.97360 0.90999 1.21994 0.98239 0.96359 0.81436 0.90146 1.46005 1.66069 1.14075 1.10539 1.20900 0.78810 0.87900 0.84914 1.90744 1.48848 1.16082 1.84371 1.21382 1.05007 0.91004 0.84504 1.46547 1.13919 1.41719 1.31068 1.21669 0.89531 0.95410 0.94414 1.22273 0.94316 0.97658 1.05779 1.21037 0.86603 0.80368 0.80347 1.90778 1.87343 1.32075 1.27860 1.44230 1.12590 1.37656 1.39845 1.15500 0.83756 0.78977 0.79866 1.90983 1.34386 1.70092 1.47745 0.92988 0.93167 0.93148 0.92150 0.92606 0.92655 0.96378 0.93818 0.88774 0.96567 0.77424 0.86726 0.86406 0.90334 0.87509 0.85628 0.85844 0.73510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.02 37.16 0.34 -1.51 16 2 C -0.09 -1.40 2.27 -90.58 -0.21 -1.60 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.13 -2.07 5.36 -26.61 -0.14 -2.21 16 5 C 0.14 2.86 6.52 -3.72 -0.02 2.84 16 6 N -0.59 -14.48 2.99 -172.32 -0.52 -15.00 16 7 C -0.25 -6.96 9.59 -15.06 -0.14 -7.10 16 8 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 9 C 0.01 0.18 4.91 -17.43 -0.09 0.10 16 10 N -0.90 -25.72 11.19 55.49 0.62 -25.10 16 11 Si 0.90 21.99 29.59 -169.99 -5.03 16.96 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 C 0.17 3.87 4.89 -3.71 -0.02 3.85 16 16 C 0.13 2.29 2.06 -67.81 -0.14 2.15 16 17 H 0.08 1.75 7.58 -51.93 -0.39 1.36 16 18 N -0.72 -10.33 4.37 -53.69 -0.23 -10.57 16 19 C 0.49 7.55 7.86 -10.98 -0.09 7.46 16 20 O -0.53 -10.68 16.09 5.56 0.09 -10.59 16 21 C 0.11 1.13 5.84 -5.19 -0.03 1.10 16 22 N -0.60 -6.70 2.28 -181.16 -0.41 -7.12 16 23 C 0.11 0.96 6.58 -4.07 -0.03 0.93 16 24 C -0.16 -1.54 6.28 -27.81 -0.17 -1.71 16 25 C 0.53 6.23 7.76 -11.03 -0.09 6.15 16 26 O -0.51 -7.35 17.93 5.60 0.10 -7.25 16 27 N -0.67 -7.83 5.18 -16.02 -0.08 -7.91 16 28 C 0.72 9.50 8.22 -87.74 -0.72 8.78 16 29 O -0.56 -8.97 16.57 5.34 0.09 -8.88 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.58 7.36 -51.92 -0.38 0.20 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.09 2.56 6.04 -51.93 -0.31 2.24 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.39 4.21 8.30 -40.82 -0.34 3.87 16 41 H 0.11 0.77 8.06 -51.93 -0.42 0.35 16 42 H 0.12 1.14 7.27 -51.93 -0.38 0.76 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.11 0.89 8.01 -51.93 -0.42 0.47 16 45 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 47 H 0.42 4.33 8.86 -40.82 -0.36 3.97 16 LS Contribution 381.69 15.07 5.75 5.75 Total: -1.00 -36.45 381.69 -8.37 -44.82 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -7.19 Total: 5.67 kcal Atomic # 6 Polarization: 20.76 SS G_CDS: -1.55 Total: 19.21 kcal Atomic # 7 Polarization: -65.07 SS G_CDS: -0.63 Total: -65.70 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: 0.28 Total: -26.72 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.45 -8.37 -44.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968514773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.465 kcal (2) G-P(sol) polarization free energy of solvation -36.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds