Wall clock time and date at job start Tue Mar 31 2020 21:48:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 H 1.08993 * 109.45690 * 2 1
4 4 C 1.53034 * 109.45941 * 119.97359 * 2 1 3
5 5 C 1.53190 * 109.30913 * 181.38539 * 4 2 1
6 6 N 1.46927 * 108.77891 * 305.36250 * 5 4 2
7 7 C 1.36939 * 120.63162 * 233.58969 * 6 5 4
8 8 H 1.07997 * 119.99446 * 152.02476 * 7 6 5
9 9 C 1.38813 * 119.99972 * 332.01605 * 7 6 5
10 10 N 1.31624 * 119.99862 * 342.86983 * 9 7 6
11 11 Si 1.86800 * 119.99608 * 162.59315 * 9 7 6
12 12 H 1.48499 * 109.47083 * 266.50326 * 11 9 7
13 13 H 1.48497 * 109.47358 * 26.50849 * 11 9 7
14 14 H 1.48503 * 109.46690 * 146.51120 * 11 9 7
15 15 C 1.46925 * 118.73360 * 53.85977 * 6 5 4
16 16 C 1.53045 * 109.45663 * 240.03988 * 2 1 3
17 17 H 1.08996 * 109.49389 * 58.63111 * 16 2 1
18 18 N 1.46497 * 109.49679 * 298.56378 * 16 2 1
19 19 C 1.34774 * 119.99795 * 155.00257 * 18 16 2
20 20 O 1.21286 * 120.00136 * 359.97438 * 19 18 16
21 21 C 1.50700 * 120.00164 * 179.97438 * 19 18 16
22 22 N 1.46503 * 109.47292 * 179.97438 * 21 19 18
23 23 C 1.46412 * 119.53641 * 269.72764 * 22 21 19
24 24 C 1.53351 * 109.34554 * 144.04791 * 23 22 21
25 25 C 1.50810 * 109.09100 * 46.99428 * 24 23 22
26 26 O 1.21236 * 120.01728 * 145.63168 * 25 24 23
27 27 N 1.34561 * 119.96421 * 325.61271 * 25 24 23
28 28 C 1.34290 * 119.53159 * 89.99845 * 22 21 19
29 29 O 1.21546 * 119.21037 * 5.65313 * 28 22 21
30 30 H 1.08997 * 109.46856 * 300.02357 * 1 2 3
31 31 H 1.08995 * 109.47324 * 60.02913 * 1 2 3
32 32 H 1.09002 * 109.47080 * 180.02562 * 1 2 3
33 33 H 1.08996 * 109.50256 * 61.43686 * 4 2 1
34 34 H 1.09002 * 109.49661 * 301.33591 * 4 2 1
35 35 H 1.09008 * 109.58887 * 185.57627 * 5 4 2
36 36 H 1.09000 * 109.70669 * 65.22351 * 5 4 2
37 37 H 0.96994 * 119.99385 * 179.72342 * 10 9 7
38 38 H 1.09001 * 109.58930 * 65.93046 * 15 6 5
39 39 H 1.09003 * 109.58076 * 186.35521 * 15 6 5
40 40 H 0.97000 * 120.00051 * 335.00278 * 18 16 2
41 41 H 1.08997 * 109.46954 * 300.00466 * 21 19 18
42 42 H 1.09003 * 109.46856 * 60.00143 * 21 19 18
43 43 H 1.08999 * 109.46205 * 264.18204 * 23 22 21
44 44 H 1.08999 * 109.46273 * 24.15777 * 23 22 21
45 45 H 1.08996 * 109.69467 * 287.03122 * 24 23 22
46 46 H 1.09003 * 109.48613 * 166.82699 * 24 23 22
47 47 H 0.97001 * 119.50694 * 184.45709 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8931 1.0277 0.0000
4 6 2.0399 -0.7209 1.2499
5 6 3.5714 -0.6887 1.2640
6 7 4.0679 -1.2488 -0.0003
7 6 4.9765 -2.2734 -0.0004
8 1 5.0063 -2.9684 -0.8264
9 6 5.8592 -2.4184 1.0611
10 7 6.0648 -1.4150 1.8878
11 14 6.7492 -4.0401 1.3207
12 1 5.9765 -4.8826 2.2685
13 1 6.8783 -4.7474 0.0215
14 1 8.1004 -3.7792 1.8788
15 6 3.5756 -0.6846 -1.2644
16 6 2.0399 -0.7207 -1.2502
17 1 1.6567 -0.2208 -2.1398
18 7 1.5801 -2.1115 -1.2345
19 6 1.4516 -2.7919 -2.3908
20 8 1.7160 -2.2524 -3.4444
21 6 0.9792 -4.2228 -2.3746
22 7 0.9234 -4.7342 -3.7464
23 6 -0.3124 -4.5944 -4.5190
24 6 0.0348 -4.3272 -5.9886
25 6 1.0938 -5.3056 -6.4310
26 8 1.0948 -5.7250 -7.5685
27 7 2.0378 -5.7124 -5.5627
28 6 2.0046 -5.3294 -4.2754
29 8 2.9767 -5.5263 -3.5728
30 1 -0.3633 0.5142 0.8898
31 1 -0.3634 0.5133 -0.8902
32 1 -0.3633 -1.0277 0.0005
33 1 1.6979 -1.7558 1.2381
34 1 1.6572 -0.2209 2.1398
35 1 3.9418 -1.2847 2.0982
36 1 3.9164 0.3400 1.3685
37 1 6.6785 -1.5177 2.6318
38 1 3.9188 0.3452 -1.3632
39 1 3.9487 -1.2781 -2.0991
40 1 1.3683 -2.5428 -0.3918
41 1 1.6717 -4.8274 -1.7889
42 1 -0.0139 -4.2726 -1.9280
43 1 -0.8952 -5.5122 -4.4412
44 1 -0.8940 -3.7605 -4.1261
45 1 0.4103 -3.3098 -6.0982
46 1 -0.8573 -4.4542 -6.6019
47 1 2.7532 -6.2905 -5.8709
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000968514774.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:48:45
Heat of formation + Delta-G solvation = -96.975593 kcal
Electronic energy + Delta-G solvation = -31226.333213 eV
Core-core repulsion = 27022.936912 eV
Total energy + Delta-G solvation = -4203.396301 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-42.72444 -41.05514 -40.05288 -39.02702 -37.20752 -35.98125 -35.70165 -34.09683
-32.98249 -32.49078 -30.98698 -29.13101 -28.28839 -26.00311 -25.78987 -24.32742
-23.69284 -22.74561 -21.91269 -20.29578 -20.03380 -19.37590 -18.89027 -18.63427
-18.23664 -17.55721 -17.04473 -16.73822 -16.39930 -15.89205 -15.83299 -15.68744
-15.58219 -15.53748 -15.08386 -14.79732 -14.70317 -14.50350 -14.30505 -14.07205
-13.58701 -13.45797 -13.21444 -12.98807 -12.97295 -12.74023 -12.64388 -12.54684
-12.34926 -12.17238 -11.91301 -11.85406 -11.59000 -11.40969 -11.39033 -11.26339
-11.07416 -11.05201 -10.54995 -9.94136 -9.85781 -8.62934 -7.88323 -5.32833
0.63200 1.24734 1.41428 1.44191 1.53808 1.73024 1.96881 2.12437
2.48603 2.56247 3.25044 3.40000 3.61931 3.68610 3.82289 3.96278
4.03805 4.07352 4.14086 4.16417 4.44264 4.47962 4.52087 4.60542
4.66966 4.80634 4.82835 4.85720 4.86010 4.94049 5.02539 5.06461
5.11318 5.13671 5.28859 5.33070 5.42575 5.53129 5.55308 5.66366
5.71739 5.81948 6.28841 6.38692 6.42119 6.72013 7.03563 7.16292
7.39118 7.86285 8.36309 9.15991
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.011802 B = 0.003959 C = 0.003170
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2371.969642 B = 7070.368551 C = 8830.636145
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.086 4.086
3 H 0.071 0.929
4 C -0.122 4.122
5 C 0.172 3.828
6 N -0.597 5.597
7 C -0.249 4.249
8 H 0.044 0.956
9 C -0.040 4.040
10 N -0.929 5.929
11 Si 0.956 3.044
12 H -0.276 1.276
13 H -0.285 1.285
14 H -0.293 1.293
15 C 0.134 3.866
16 C 0.151 3.849
17 H 0.081 0.919
18 N -0.691 5.691
19 C 0.492 3.508
20 O -0.581 6.581
21 C 0.111 3.889
22 N -0.593 5.593
23 C 0.110 3.890
24 C -0.151 4.151
25 C 0.526 3.474
26 O -0.540 6.540
27 N -0.674 5.674
28 C 0.708 3.292
29 O -0.599 6.599
30 H 0.066 0.934
31 H 0.057 0.943
32 H 0.065 0.935
33 H 0.063 0.937
34 H 0.076 0.924
35 H 0.055 0.945
36 H -0.008 1.008
37 H 0.250 0.750
38 H 0.015 0.985
39 H 0.024 0.976
40 H 0.408 0.592
41 H 0.106 0.894
42 H 0.172 0.828
43 H 0.111 0.889
44 H 0.130 0.870
45 H 0.113 0.887
46 H 0.157 0.843
47 H 0.424 0.576
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.892 -3.680 -7.112 24.252
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.105 4.105
3 H 0.090 0.910
4 C -0.161 4.161
5 C 0.047 3.953
6 N -0.320 5.320
7 C -0.380 4.380
8 H 0.062 0.938
9 C -0.236 4.236
10 N -0.575 5.575
11 Si 0.785 3.215
12 H -0.203 1.203
13 H -0.211 1.211
14 H -0.220 1.220
15 C 0.007 3.993
16 C 0.045 3.955
17 H 0.099 0.901
18 N -0.342 5.342
19 C 0.277 3.723
20 O -0.462 6.462
21 C -0.015 4.015
22 N -0.329 5.329
23 C -0.011 4.011
24 C -0.191 4.191
25 C 0.317 3.683
26 O -0.415 6.415
27 N -0.342 5.342
28 C 0.409 3.591
29 O -0.476 6.476
30 H 0.085 0.915
31 H 0.076 0.924
32 H 0.084 0.916
33 H 0.082 0.918
34 H 0.095 0.905
35 H 0.073 0.927
36 H 0.011 0.989
37 H 0.060 0.940
38 H 0.033 0.967
39 H 0.043 0.957
40 H 0.245 0.755
41 H 0.124 0.876
42 H 0.189 0.811
43 H 0.129 0.871
44 H 0.148 0.852
45 H 0.131 0.869
46 H 0.175 0.825
47 H 0.264 0.736
Dipole moment (debyes) X Y Z Total
from point charges -22.272 -3.485 -7.893 23.885
hybrid contribution 2.164 -0.957 0.288 2.383
sum -20.108 -4.441 -7.606 21.953
Atomic orbital electron populations
1.21737 0.92334 1.02639 1.02205 1.21249 0.97360 0.98810 0.93076
0.91037 1.22057 0.95985 1.00371 0.97641 1.20695 0.91287 0.94858
0.88441 1.44169 1.48227 1.39037 1.00607 1.19211 1.10132 1.03065
1.05577 0.93786 1.25578 0.98067 0.99828 1.00139 1.70164 1.38674
1.30254 1.18444 0.85437 0.77768 0.80749 0.77574 1.20269 1.21093
1.22009 1.21432 0.94216 0.95223 0.88451 1.21282 0.93124 0.82279
0.98864 0.90060 1.45772 1.66051 1.13433 1.08978 1.21585 0.77351
0.89586 0.83733 1.90647 1.52364 1.70960 1.32198 1.21513 1.07240
0.90104 0.82688 1.46716 1.12160 1.58601 1.15373 1.22112 0.84482
1.06293 0.88215 1.22400 0.98975 0.98880 0.98820 1.21698 0.81835
0.80640 0.84144 1.90767 1.74355 1.56229 1.20148 1.44291 1.30311
1.50508 1.09045 1.15830 0.83605 0.78113 0.81513 1.91046 1.35837
1.60657 1.60076 0.91493 0.92368 0.91621 0.91810 0.90538 0.92693
0.98945 0.94045 0.96745 0.95711 0.75505 0.87590 0.81118 0.87119
0.85214 0.86928 0.82532 0.73574
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.35 9.05 71.98 0.65 -1.70 16
2 C -0.09 -2.27 2.48 -10.76 -0.03 -2.30 16
3 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16
4 C -0.12 -3.74 5.20 30.67 0.16 -3.58 16
5 C 0.17 7.76 5.30 86.36 0.46 8.22 16
6 N -0.60 -29.45 2.90 -698.25 -2.03 -31.48 16
7 C -0.25 -14.09 9.58 84.03 0.81 -13.29 16
8 H 0.04 2.64 7.89 -2.91 -0.02 2.62 16
9 C -0.04 -2.28 4.91 84.86 0.42 -1.87 16
10 N -0.93 -54.79 11.20 21.65 0.24 -54.54 16
11 Si 0.96 46.63 29.59 68.60 2.03 48.66 16
12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16
13 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16
14 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16
15 C 0.13 5.83 6.16 86.51 0.53 6.37 16
16 C 0.15 4.77 2.24 45.22 0.10 4.87 16
17 H 0.08 2.54 7.58 -2.39 -0.02 2.52 16
18 N -0.69 -18.98 4.26 -441.48 -1.88 -20.86 16
19 C 0.49 13.67 7.87 87.66 0.69 14.36 16
20 O -0.58 -20.43 16.09 -3.05 -0.05 -20.48 16
21 C 0.11 2.14 5.84 85.63 0.50 2.64 16
22 N -0.59 -11.65 2.28 -844.98 -1.93 -13.57 16
23 C 0.11 1.00 6.60 86.51 0.57 1.57 16
24 C -0.15 -1.81 6.30 30.00 0.19 -1.63 16
25 C 0.53 10.98 7.76 87.73 0.68 11.66 16
26 O -0.54 -14.44 17.93 -2.89 -0.05 -14.50 16
27 N -0.67 -15.97 5.18 -441.63 -2.29 -18.26 16
28 C 0.71 19.70 8.22 179.34 1.47 21.18 16
29 O -0.60 -22.91 16.57 -3.86 -0.06 -22.97 16
30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16
31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16
32 H 0.06 1.01 7.55 -2.39 -0.02 0.99 16
33 H 0.06 1.83 6.40 -2.39 -0.02 1.81 16
34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16
35 H 0.05 2.84 6.05 -2.38 -0.01 2.82 16
36 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16
37 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16
38 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16
39 H 0.02 1.21 7.93 -2.39 -0.02 1.19 16
40 H 0.41 9.84 6.64 -92.71 -0.62 9.23 16
41 H 0.11 2.54 7.27 -2.39 -0.02 2.52 16
42 H 0.17 1.22 8.06 -2.39 -0.02 1.20 16
43 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16
44 H 0.13 0.56 8.01 -2.39 -0.02 0.54 16
45 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16
46 H 0.16 0.86 8.14 -2.39 -0.02 0.84 16
47 H 0.42 9.72 8.86 -92.71 -0.82 8.90 16
Total: -1.00 -84.52 378.64 0.76 -83.76
By element:
Atomic # 1 Polarization: 18.16 SS G_CDS: -0.43 Total: 17.73 kcal
Atomic # 6 Polarization: 39.31 SS G_CDS: 7.20 Total: 46.52 kcal
Atomic # 7 Polarization: -130.84 SS G_CDS: -7.88 Total: -138.72 kcal
Atomic # 8 Polarization: -57.78 SS G_CDS: -0.16 Total: -57.95 kcal
Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal
Total: -84.52 0.76 -83.76 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000968514774.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.219 kcal
(2) G-P(sol) polarization free energy of solvation -84.520 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.739 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.763 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.757 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.976 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds