Wall clock time and date at job start Tue Mar 31 2020 21:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46271 * 2 1 4 4 C 1.53043 * 109.45965 * 240.04156 * 2 1 3 5 5 C 1.53185 * 109.31380 * 178.61039 * 4 2 1 6 6 N 1.46929 * 108.77590 * 54.64014 * 5 4 2 7 7 C 1.36936 * 120.63495 * 126.41109 * 6 5 4 8 8 H 1.07998 * 119.99901 * 207.67317 * 7 6 5 9 9 C 1.38808 * 119.99799 * 27.66612 * 7 6 5 10 10 N 1.31615 * 119.99919 * 17.37347 * 9 7 6 11 11 Si 1.86803 * 119.99890 * 197.36546 * 9 7 6 12 12 H 1.48503 * 109.47142 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46750 * 120.00271 * 11 9 7 14 14 H 1.48496 * 109.47304 * 240.00264 * 11 9 7 15 15 C 1.46929 * 118.73367 * 306.39079 * 6 5 4 16 16 C 1.53040 * 109.46236 * 119.97514 * 2 1 3 17 17 H 1.09000 * 109.52142 * 61.41658 * 16 2 1 18 18 N 1.46503 * 109.49536 * 301.33484 * 16 2 1 19 19 C 1.34774 * 119.99900 * 155.16544 * 18 16 2 20 20 O 1.21280 * 120.00057 * 359.97438 * 19 18 16 21 21 C 1.50701 * 120.00065 * 180.02562 * 19 18 16 22 22 N 1.46498 * 109.47108 * 179.97438 * 21 19 18 23 23 C 1.47310 * 126.69114 * 89.99610 * 22 21 19 24 24 C 1.51583 * 103.59655 * 179.97438 * 23 22 21 25 25 O 1.21235 * 127.16235 * 179.97438 * 24 23 22 26 26 N 1.34770 * 105.68144 * 0.02562 * 24 23 22 27 27 C 1.46506 * 124.17939 * 179.97438 * 26 24 23 28 28 C 1.33791 * 111.64747 * 359.76814 * 26 24 23 29 29 O 1.21537 * 123.77639 * 180.24709 * 28 26 24 30 30 H 1.08999 * 109.46854 * 300.02288 * 1 2 3 31 31 H 1.08993 * 109.47869 * 60.02650 * 1 2 3 32 32 H 1.09007 * 109.47145 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.49504 * 58.65884 * 4 2 1 34 34 H 1.08995 * 109.49650 * 298.56887 * 4 2 1 35 35 H 1.09001 * 109.59288 * 294.84864 * 5 4 2 36 36 H 1.09006 * 109.58566 * 174.41925 * 5 4 2 37 37 H 0.97007 * 119.99487 * 179.97438 * 10 9 7 38 38 H 1.09000 * 109.58514 * 173.39639 * 15 6 5 39 39 H 1.09003 * 109.58578 * 293.81373 * 15 6 5 40 40 H 0.96996 * 120.00023 * 335.16364 * 18 16 2 41 41 H 1.08999 * 109.46913 * 299.99374 * 21 19 18 42 42 H 1.09002 * 109.46845 * 59.99862 * 21 19 18 43 43 H 1.08998 * 110.60088 * 298.49144 * 23 22 21 44 44 H 1.09010 * 110.59570 * 61.28253 * 23 22 21 45 45 H 1.09007 * 109.46919 * 0.03005 * 27 26 24 46 46 H 1.08995 * 109.47148 * 120.02336 * 27 26 24 47 47 H 1.08991 * 109.47309 * 240.03090 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7206 -1.2502 5 6 3.5713 -0.6883 -1.2645 6 7 4.0679 -1.2488 -0.0003 7 6 4.9764 -2.2734 -0.0005 8 1 5.0096 -2.9658 0.8277 9 6 5.8546 -2.4220 -1.0651 10 7 6.0604 -1.4199 -1.8932 11 14 6.7446 -4.0442 -1.3223 12 1 6.3422 -5.0030 -0.2621 13 1 6.3874 -4.5991 -2.6526 14 1 8.2111 -3.8200 -1.2569 15 6 3.5714 -0.6887 1.2640 16 6 2.0399 -0.7209 1.2500 17 1 1.6978 -1.7558 1.2386 18 7 1.5256 -0.0490 2.4459 19 6 1.4003 -0.7318 3.6011 20 8 1.7128 -1.9026 3.6505 21 6 0.8708 -0.0408 4.8312 22 7 0.8306 -0.9907 5.9458 23 6 1.9066 -1.2547 6.9166 24 6 1.3143 -2.3127 7.8262 25 8 1.8457 -2.8392 8.7802 26 7 0.0744 -2.5473 7.3530 27 6 -0.8615 -3.5104 7.9385 28 6 -0.1980 -1.7888 6.2850 29 8 -1.2554 -1.8190 5.6867 30 1 -0.3633 0.5142 0.8898 31 1 -0.3634 0.5134 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.6571 -0.2204 -2.1399 34 1 1.6977 -1.7554 -1.2386 35 1 3.9142 0.3412 -1.3674 36 1 3.9415 -1.2843 -2.0987 37 1 6.6744 -1.5238 -2.6370 38 1 3.9417 -1.2848 2.0981 39 1 3.9144 0.3407 1.3673 40 1 1.2753 0.8873 2.4064 41 1 1.5230 0.7939 5.0882 42 1 -0.1348 0.3309 4.6346 43 1 2.7938 -1.6365 6.4114 44 1 2.1456 -0.3519 7.4790 45 1 -0.3967 -3.9915 8.7992 46 1 -1.7654 -2.9912 8.2568 47 1 -1.1186 -4.2651 7.1954 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968541077.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:50 Heat of formation + Delta-G solvation = -45.448994 kcal Electronic energy + Delta-G solvation = -30325.003190 eV Core-core repulsion = 26123.841250 eV Total energy + Delta-G solvation = -4201.161940 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.54049 -39.85695 -38.82482 -37.73948 -36.33156 -35.39073 -34.51029 -33.08057 -31.16975 -30.77593 -28.96060 -27.49728 -27.40057 -26.48383 -24.09444 -22.99554 -22.26057 -21.13930 -20.78311 -20.17207 -19.40743 -17.83860 -17.75926 -16.97272 -16.79867 -16.72906 -15.93480 -15.87480 -15.14063 -14.79187 -14.66434 -14.46155 -14.36687 -14.22837 -13.80573 -13.66491 -13.52288 -13.39601 -13.16029 -12.98104 -12.89803 -12.50806 -12.36227 -12.03862 -11.67122 -11.51769 -11.17961 -11.05980 -10.82653 -10.68422 -10.51995 -10.28790 -10.26090 -10.15464 -10.07775 -9.90458 -9.72398 -9.65628 -9.09715 -8.85969 -8.42403 -6.69763 -5.80273 -3.22271 1.36140 1.72113 2.57708 2.68298 2.74389 3.35259 3.38119 3.46229 3.50359 3.75267 4.34557 4.49589 4.63782 4.74672 4.80946 4.91389 4.97794 5.02359 5.09718 5.23012 5.26591 5.32425 5.36613 5.44734 5.49990 5.57933 5.87243 5.93983 6.00563 6.03542 6.15154 6.19642 6.28763 6.52778 6.59387 6.63120 6.69950 6.79942 6.80691 6.95291 7.05915 7.33694 7.62413 7.63001 7.81516 7.81806 8.32195 8.44504 9.20401 9.82749 10.37898 11.28375 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013258 B = 0.002967 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.409929 B = 9435.352003 C =10814.834704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.067 0.933 4 C -0.134 4.134 5 C 0.167 3.833 6 N -0.588 5.588 7 C -0.250 4.250 8 H 0.066 0.934 9 C 0.003 3.997 10 N -0.903 5.903 11 Si 0.901 3.099 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.290 1.290 15 C 0.143 3.857 16 C 0.133 3.867 17 H 0.085 0.915 18 N -0.717 5.717 19 C 0.488 3.512 20 O -0.525 6.525 21 C 0.133 3.867 22 N -0.608 5.608 23 C 0.064 3.936 24 C 0.527 3.473 25 O -0.473 6.473 26 N -0.579 5.579 27 C 0.089 3.911 28 C 0.707 3.293 29 O -0.539 6.539 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.019 0.981 36 H 0.089 0.911 37 H 0.253 0.747 38 H 0.056 0.944 39 H 0.017 0.983 40 H 0.395 0.605 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.093 0.907 46 H 0.077 0.923 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.618 7.039 15.534 21.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.086 0.914 4 C -0.174 4.174 5 C 0.041 3.959 6 N -0.310 5.310 7 C -0.380 4.380 8 H 0.084 0.916 9 C -0.196 4.196 10 N -0.548 5.548 11 Si 0.731 3.269 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.217 1.217 15 C 0.016 3.984 16 C 0.028 3.972 17 H 0.103 0.897 18 N -0.368 5.368 19 C 0.271 3.729 20 O -0.400 6.400 21 C 0.008 3.992 22 N -0.346 5.346 23 C -0.062 4.062 24 C 0.315 3.685 25 O -0.344 6.344 26 N -0.326 5.326 27 C -0.052 4.052 28 C 0.409 3.591 29 O -0.412 6.412 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.037 0.963 36 H 0.108 0.892 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.035 0.965 40 H 0.229 0.771 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.112 0.888 46 H 0.096 0.904 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.598 5.879 15.564 21.487 hybrid contribution 0.422 -0.341 -0.337 0.639 sum -13.176 5.538 15.227 20.884 Atomic orbital electron populations 1.21853 0.95936 1.01626 1.00738 1.21302 0.94584 0.99621 0.95441 0.91437 1.22252 1.00639 0.99587 0.94897 1.20852 0.87323 0.97306 0.90380 1.44003 1.48067 1.39827 0.99138 1.19249 1.09671 1.02831 1.06216 0.91586 1.25009 0.97228 0.97509 0.99824 1.70046 1.37780 1.28971 1.17989 0.86232 0.79085 0.83732 0.77838 1.20181 1.21511 1.21709 1.21170 0.90042 0.96539 0.90689 1.21792 0.96672 0.96963 0.81810 0.89658 1.46077 1.66016 1.14302 1.10447 1.20991 0.78997 0.87924 0.84990 1.90763 1.48869 1.16000 1.84416 1.21182 1.04961 0.89933 0.83128 1.46924 1.14721 1.42626 1.30307 1.22555 0.93429 0.99623 0.90549 1.20851 0.81100 0.82606 0.83974 1.90819 1.65024 1.52330 1.26194 1.46223 1.17304 1.39278 1.29746 1.21819 0.92302 0.91488 0.99558 1.15729 0.84351 0.78967 0.80058 1.90983 1.25066 1.69364 1.55794 0.93358 0.92961 0.92954 0.92688 0.92446 0.96300 0.89245 0.93704 0.92516 0.96514 0.77110 0.86305 0.86342 0.85371 0.85697 0.88801 0.90397 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.02 37.16 0.34 -1.48 16 2 C -0.09 -1.37 2.27 -90.58 -0.21 -1.58 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.13 -2.43 5.36 -26.61 -0.14 -2.58 16 5 C 0.17 3.86 5.31 -3.71 -0.02 3.84 16 6 N -0.59 -14.60 3.00 -172.32 -0.52 -15.11 16 7 C -0.25 -6.95 9.59 -15.06 -0.14 -7.10 16 8 H 0.07 1.86 7.89 -52.49 -0.41 1.45 16 9 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 10 N -0.90 -25.98 11.19 55.49 0.62 -25.36 16 11 Si 0.90 21.95 29.59 -169.99 -5.03 16.92 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 C 0.14 2.97 6.09 -3.71 -0.02 2.95 16 16 C 0.13 2.24 2.06 -67.81 -0.14 2.10 16 17 H 0.09 1.73 7.58 -51.93 -0.39 1.34 16 18 N -0.72 -8.89 4.37 -53.69 -0.23 -9.12 16 19 C 0.49 6.45 7.86 -10.99 -0.09 6.37 16 20 O -0.53 -9.70 16.09 5.56 0.09 -9.61 16 21 C 0.13 1.11 6.63 -5.19 -0.03 1.08 16 22 N -0.61 -6.15 2.51 -181.39 -0.45 -6.61 16 23 C 0.06 0.51 7.66 -4.32 -0.03 0.48 16 24 C 0.53 5.46 8.32 -10.55 -0.09 5.38 16 25 O -0.47 -5.96 17.51 5.60 0.10 -5.86 16 26 N -0.58 -6.26 3.01 -128.16 -0.39 -6.64 16 27 C 0.09 0.73 10.76 59.85 0.64 1.38 16 28 C 0.71 8.88 8.31 -88.02 -0.73 8.14 16 29 O -0.54 -8.43 17.34 5.33 0.09 -8.33 16 30 H 0.05 0.52 7.35 -51.93 -0.38 0.13 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 2.34 6.04 -51.93 -0.31 2.03 16 37 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.06 1.27 7.93 -51.93 -0.41 0.85 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.40 3.44 8.30 -40.82 -0.34 3.10 16 41 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.12 0.84 8.02 -51.93 -0.42 0.42 16 43 H 0.13 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.13 0.54 8.14 -51.92 -0.42 0.12 16 45 H 0.09 0.66 7.64 -51.93 -0.40 0.26 16 46 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 386.84 15.07 5.83 5.83 Total: -1.00 -37.01 386.84 -7.92 -44.93 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.28 Total: -0.01 kcal Atomic # 6 Polarization: 19.73 SS G_CDS: -0.75 Total: 18.97 kcal Atomic # 7 Polarization: -61.87 SS G_CDS: -0.97 Total: -62.84 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: 0.28 Total: -23.80 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.01 -7.92 -44.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968541077.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.522 kcal (2) G-P(sol) polarization free energy of solvation -37.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds